Ggra9928.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9928.t1
Unique NameGgra9928.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length433
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000887_piloncontigtig00000887_pilon:116622..117920 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7091.BGIBMGA006812-TA
PFAMsAmidohydro_1
Max annot lvl33208|Metazoa
KEGG rclassRC00680
KEGG koko:K01466
KEGG ReactionR02425
KEGG Pathwayko00230,ko01100,ko01120,map00230,map01100,map01120
KEGG ModuleM00546
GOsGO:0003674,GO:0003824,GO:0004038,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006144,GO:0006145,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009112,GO:0009987,GO:0016787,GO:0016810,GO:0016812,GO:0019439,GO:0034641,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044424,GO:0044464,GO:0046113,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575
Evalue6.54e-99
EggNOG OGsCOG0044@1|root,KOG2584@2759|Eukaryota,38CFY@33154|Opisthokonta,3BD2V@33208|Metazoa,3CY3E@33213|Bilateria,41VGG@6656|Arthropoda,3SHSA@50557|Insecta,4484U@7088|Lepidoptera
EC3.5.2.5
DescriptionAmidohydrolase family
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9928Ggra9928Gracilaria gracilis GNS1m malegenetig00000887_pilon 116622..117920 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9928.t1.stop1Ggra9928.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000887_pilon 116622..116624 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9928.t1.CDS1Ggra9928.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000887_pilon 116622..117920 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9928.t1.exon1Ggra9928.t1.exon1Gracilaria gracilis GNS1m maleexontig00000887_pilon 116622..117920 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9928.t1.start1Ggra9928.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000887_pilon 117918..117920 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9928.t1Ggra9928.t1Gracilaria gracilis GNS1m malepolypeptidetig00000887_pilon 116622..117920 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9928.t1 ID=Ggra9928.t1|Name=Ggra9928.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=433bp
MPGLIDPHVHINSPGRESWEGFDQATRAAAAGGTTTVLDMPLNNVPSTIN
AETLKKKVEAFRASNPLIDIGFIGGIVHGNKESISELVDEGVLALKSFMI
DSQSADFPHVTEEDLQAAMQELGQIFSSPSYFGKPIPYILHAELDDFGPD
TGSRASQRESYDHQSYHQFERSRPDSWETSAIEVASKLANSTNIHIHIAH
VSSHEAAKRVLELKRSQSFGAKITAETCTQYLLWAEEDIPPGSTLLKCAP
PIRSAVNREKLRSYLFSARNGKFALDFVASDHSPCPPEMKKTNLNLTEAW
GGISGLQYRLRGTWRVAKELNISLTQLSQILSERPAMVFGLQDKKGFLRP
GLDADIVVWDPDTREIPNERECLHRHKLSPFHSIELRGSILYTLLRGKLV
YNRDLNISPFATPFGSMLMRSKTDGNITRVEL*
back to top

spliced messenger RNA

>Ggra9928.t1 ID=Ggra9928.t1|Name=Ggra9928.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1299bp|location=Sequence derived from alignment at tig00000887_pilon:116622..117920- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTGGTTTAATCGATCCCCACGTACACATCAACTCTCCCGGCAGGGA
GAGCTGGGAAGGGTTTGATCAAGCCACTCGAGCGGCAGCTGCGGGTGGAA
CCACGACCGTACTAGACATGCCATTGAATAACGTTCCTTCTACCATTAAT
GCCGAAACGCTAAAGAAAAAGGTGGAAGCGTTTAGGGCATCAAATCCACT
TATTGACATCGGTTTCATTGGAGGAATTGTTCATGGAAACAAAGAAAGTA
TTTCAGAACTGGTTGACGAAGGAGTGCTTGCCTTAAAGTCGTTCATGATC
GACTCACAATCAGCCGATTTCCCACATGTAACTGAAGAGGACCTCCAAGC
TGCTATGCAAGAACTGGGTCAAATATTCTCAAGTCCATCGTACTTTGGAA
AACCAATCCCGTACATTCTTCATGCCGAGCTTGATGACTTCGGGCCGGAC
ACTGGGTCTAGGGCCTCACAACGGGAATCATATGATCATCAAAGCTATCA
TCAATTCGAAAGGTCTCGACCAGACTCATGGGAAACAAGTGCTATCGAAG
TTGCAAGCAAGTTGGCCAACAGTACCAACATACATATCCACATAGCCCAT
GTATCATCTCATGAAGCAGCTAAGCGTGTACTGGAACTCAAGCGCTCACA
GTCCTTCGGCGCAAAAATAACAGCCGAAACCTGCACCCAATACCTTCTTT
GGGCCGAAGAGGATATCCCACCAGGTTCTACATTACTGAAATGTGCCCCT
CCGATTCGTTCAGCTGTAAATCGGGAGAAGCTTAGAAGCTATTTGTTTTC
CGCCAGGAATGGGAAGTTCGCACTAGACTTCGTTGCCTCTGATCACTCCC
CATGCCCCCCAGAAATGAAGAAAACCAATCTGAATTTGACAGAGGCATGG
GGAGGAATCTCTGGGCTGCAATACCGCTTACGAGGCACCTGGAGGGTTGC
AAAGGAATTGAACATTAGCCTGACACAACTATCACAGATCCTCTCCGAGA
GACCCGCAATGGTATTTGGGCTTCAAGACAAGAAAGGGTTTCTCAGACCA
GGATTAGATGCGGATATTGTCGTGTGGGATCCTGATACTAGAGAAATCCC
TAACGAGCGAGAGTGCTTGCACCGCCACAAACTCTCTCCCTTTCACAGTA
TTGAACTCAGGGGTTCCATCTTGTACACCTTACTGCGCGGAAAGCTTGTG
TATAATCGTGACTTGAACATATCCCCTTTTGCGACACCTTTTGGGAGCAT
GCTCATGCGATCCAAAACCGATGGTAACATTACCCGAGTAGAGCTTTAA
back to top

protein sequence of Ggra9928.t1

>Ggra9928.t1 ID=Ggra9928.t1|Name=Ggra9928.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=433bp
MPGLIDPHVHINSPGRESWEGFDQATRAAAAGGTTTVLDMPLNNVPSTIN
AETLKKKVEAFRASNPLIDIGFIGGIVHGNKESISELVDEGVLALKSFMI
DSQSADFPHVTEEDLQAAMQELGQIFSSPSYFGKPIPYILHAELDDFGPD
TGSRASQRESYDHQSYHQFERSRPDSWETSAIEVASKLANSTNIHIHIAH
VSSHEAAKRVLELKRSQSFGAKITAETCTQYLLWAEEDIPPGSTLLKCAP
PIRSAVNREKLRSYLFSARNGKFALDFVASDHSPCPPEMKKTNLNLTEAW
GGISGLQYRLRGTWRVAKELNISLTQLSQILSERPAMVFGLQDKKGFLRP
GLDADIVVWDPDTREIPNERECLHRHKLSPFHSIELRGSILYTLLRGKLV
YNRDLNISPFATPFGSMLMRSKTDGNITRVEL*
back to top

mRNA from alignment at tig00000887_pilon:116622..117920-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9928.t1 ID=Ggra9928.t1|Name=Ggra9928.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1299bp|location=Sequence derived from alignment at tig00000887_pilon:116622..117920- (Gracilaria gracilis GNS1m male)
ATGCCTGGTTTAATCGATCCCCACGTACACATCAACTCTCCCGGCAGGGA
GAGCTGGGAAGGGTTTGATCAAGCCACTCGAGCGGCAGCTGCGGGTGGAA
CCACGACCGTACTAGACATGCCATTGAATAACGTTCCTTCTACCATTAAT
GCCGAAACGCTAAAGAAAAAGGTGGAAGCGTTTAGGGCATCAAATCCACT
TATTGACATCGGTTTCATTGGAGGAATTGTTCATGGAAACAAAGAAAGTA
TTTCAGAACTGGTTGACGAAGGAGTGCTTGCCTTAAAGTCGTTCATGATC
GACTCACAATCAGCCGATTTCCCACATGTAACTGAAGAGGACCTCCAAGC
TGCTATGCAAGAACTGGGTCAAATATTCTCAAGTCCATCGTACTTTGGAA
AACCAATCCCGTACATTCTTCATGCCGAGCTTGATGACTTCGGGCCGGAC
ACTGGGTCTAGGGCCTCACAACGGGAATCATATGATCATCAAAGCTATCA
TCAATTCGAAAGGTCTCGACCAGACTCATGGGAAACAAGTGCTATCGAAG
TTGCAAGCAAGTTGGCCAACAGTACCAACATACATATCCACATAGCCCAT
GTATCATCTCATGAAGCAGCTAAGCGTGTACTGGAACTCAAGCGCTCACA
GTCCTTCGGCGCAAAAATAACAGCCGAAACCTGCACCCAATACCTTCTTT
GGGCCGAAGAGGATATCCCACCAGGTTCTACATTACTGAAATGTGCCCCT
CCGATTCGTTCAGCTGTAAATCGGGAGAAGCTTAGAAGCTATTTGTTTTC
CGCCAGGAATGGGAAGTTCGCACTAGACTTCGTTGCCTCTGATCACTCCC
CATGCCCCCCAGAAATGAAGAAAACCAATCTGAATTTGACAGAGGCATGG
GGAGGAATCTCTGGGCTGCAATACCGCTTACGAGGCACCTGGAGGGTTGC
AAAGGAATTGAACATTAGCCTGACACAACTATCACAGATCCTCTCCGAGA
GACCCGCAATGGTATTTGGGCTTCAAGACAAGAAAGGGTTTCTCAGACCA
GGATTAGATGCGGATATTGTCGTGTGGGATCCTGATACTAGAGAAATCCC
TAACGAGCGAGAGTGCTTGCACCGCCACAAACTCTCTCCCTTTCACAGTA
TTGAACTCAGGGGTTCCATCTTGTACACCTTACTGCGCGGAAAGCTTGTG
TATAATCGTGACTTGAACATATCCCCTTTTGCGACACCTTTTGGGAGCAT
GCTCATGCGATCCAAAACCGATGGTAACATTACCCGAGTAGAGCTTTAA
back to top

Coding sequence (CDS) from alignment at tig00000887_pilon:116622..117920-

>Ggra9928.t1 ID=Ggra9928.t1|Name=Ggra9928.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1299bp|location=Sequence derived from alignment at tig00000887_pilon:116622..117920- (Gracilaria gracilis GNS1m male)
ATGCCTGGTTTAATCGATCCCCACGTACACATCAACTCTCCCGGCAGGGA
GAGCTGGGAAGGGTTTGATCAAGCCACTCGAGCGGCAGCTGCGGGTGGAA
CCACGACCGTACTAGACATGCCATTGAATAACGTTCCTTCTACCATTAAT
GCCGAAACGCTAAAGAAAAAGGTGGAAGCGTTTAGGGCATCAAATCCACT
TATTGACATCGGTTTCATTGGAGGAATTGTTCATGGAAACAAAGAAAGTA
TTTCAGAACTGGTTGACGAAGGAGTGCTTGCCTTAAAGTCGTTCATGATC
GACTCACAATCAGCCGATTTCCCACATGTAACTGAAGAGGACCTCCAAGC
TGCTATGCAAGAACTGGGTCAAATATTCTCAAGTCCATCGTACTTTGGAA
AACCAATCCCGTACATTCTTCATGCCGAGCTTGATGACTTCGGGCCGGAC
ACTGGGTCTAGGGCCTCACAACGGGAATCATATGATCATCAAAGCTATCA
TCAATTCGAAAGGTCTCGACCAGACTCATGGGAAACAAGTGCTATCGAAG
TTGCAAGCAAGTTGGCCAACAGTACCAACATACATATCCACATAGCCCAT
GTATCATCTCATGAAGCAGCTAAGCGTGTACTGGAACTCAAGCGCTCACA
GTCCTTCGGCGCAAAAATAACAGCCGAAACCTGCACCCAATACCTTCTTT
GGGCCGAAGAGGATATCCCACCAGGTTCTACATTACTGAAATGTGCCCCT
CCGATTCGTTCAGCTGTAAATCGGGAGAAGCTTAGAAGCTATTTGTTTTC
CGCCAGGAATGGGAAGTTCGCACTAGACTTCGTTGCCTCTGATCACTCCC
CATGCCCCCCAGAAATGAAGAAAACCAATCTGAATTTGACAGAGGCATGG
GGAGGAATCTCTGGGCTGCAATACCGCTTACGAGGCACCTGGAGGGTTGC
AAAGGAATTGAACATTAGCCTGACACAACTATCACAGATCCTCTCCGAGA
GACCCGCAATGGTATTTGGGCTTCAAGACAAGAAAGGGTTTCTCAGACCA
GGATTAGATGCGGATATTGTCGTGTGGGATCCTGATACTAGAGAAATCCC
TAACGAGCGAGAGTGCTTGCACCGCCACAAACTCTCTCCCTTTCACAGTA
TTGAACTCAGGGGTTCCATCTTGTACACCTTACTGCGCGGAAAGCTTGTG
TATAATCGTGACTTGAACATATCCCCTTTTGCGACACCTTTTGGGAGCAT
GCTCATGCGATCCAAAACCGATGGTAACATTACCCGAGTAGAGCTTTAA
back to top