Ggra9926.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9926.t1
Unique Name	Ggra9926.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	379

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000887_pilon	contig	tig00000887_pilon:111179..112315 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703459.1
PFAMs	Iso_dh
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00114
KEGG ko	ko:K00030
KEGG Reaction	R00709
KEGG Pathway	ko00020,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,map00020,map01100,map01110,map01120,map01130,map01200,map01210,map01230
KEGG Module	M00009,M00010
GOs	GO:0000166,GO:0003674,GO:0003824,GO:0004448,GO:0004449,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006102,GO:0008144,GO:0008150,GO:0008152,GO:0008270,GO:0009060,GO:0009507,GO:0009536,GO:0009987,GO:0015980,GO:0016491,GO:0016614,GO:0016616,GO:0016999,GO:0017076,GO:0017144,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045333,GO:0046872,GO:0046914,GO:0055114,GO:0071704,GO:0072350,GO:0097159,GO:0097367,GO:1901265,GO:1901363
Evalue	1.61e-165
EggNOG OGs	COG0473@1\|root,KOG0785@2759\|Eukaryota
EC	1.1.1.41
Description	isocitrate dehydrogenase (NAD ) activity
COG category	CE
BRITE	br01601,ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9926	Ggra9926	Gracilaria gracilis GNS1m male	gene	tig00000887_pilon 111179..112315 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9926.t1.start1	Ggra9926.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000887_pilon 111179..111181 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9926.t1.CDS1	Ggra9926.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000887_pilon 111179..112315 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9926.t1.exon1	Ggra9926.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000887_pilon 111179..112315 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9926.t1.stop1	Ggra9926.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000887_pilon 112313..112315 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9926.t1	Ggra9926.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000887_pilon 111179..112315 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000887_pilon:111179..112315+
coding sequence from alignment at tig00000887_pilon:111179..112315+

mRNA sequence

>Ggra9926.t1 ID=Ggra9926.t1|Name=Ggra9926.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=379bp
MIRALQRSSSRLSVIRSALYRDSPRPSDNRATFCTSAAPRQFTVTLFPGD
GIGPEISESVKRVLNAADVPINWETHIIDVHAAKPGEDLISKDALDSVRR
NGFGLKGPMATPIGKGHRSLNLTLRKELGLYANVRPCVSMPGVDTLYKDV
DVVTVRENTEGEYSGLEHTVYPGVVESLKVITRDASMRVCEYAFDYAIKN
NRKRVTAVHKASVMKLSDGLFLQCAHEVAEKHKASGVEFQTLLIDNAASL
LVSNPALLDVMVMPNLYGDIISDLCAGLIGGLGLTPSGNMGTECMLAEAV
HGTAPDIAGKNMANPTALLMSALMMLRHMNLRVEADLIEKSVHSVLREGS
VRTGDIGGTSSTTDYTDAIIRKMDESRA*

spliced messenger RNA

>Ggra9926.t1 ID=Ggra9926.t1|Name=Ggra9926.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1137bp|location=Sequence derived from alignment at tig00000887_pilon:111179..112315+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTCGTGCCCTCCAACGGAGTTCATCAAGGCTGTCTGTCATCAGATC
TGCTCTCTATCGCGATTCTCCACGACCCTCAGACAATCGCGCAACGTTTT
GTACCTCCGCAGCGCCGCGCCAATTCACAGTCACTCTCTTCCCCGGCGAT
GGGATCGGCCCAGAGATCTCAGAGTCTGTCAAGCGTGTTCTCAATGCAGC
TGATGTTCCCATCAACTGGGAGACCCATATCATAGACGTGCATGCTGCAA
AACCAGGCGAAGACCTCATCAGCAAGGATGCGCTTGATTCCGTCCGTCGA
AATGGTTTCGGGCTCAAGGGCCCCATGGCCACTCCTATCGGTAAGGGTCA
TAGAAGTCTTAATCTCACGCTTCGGAAAGAACTAGGGCTTTACGCGAACG
TTCGGCCTTGTGTTTCAATGCCTGGCGTTGACACGCTTTACAAAGACGTG
GATGTGGTCACCGTTCGAGAAAATACCGAAGGAGAGTACAGTGGATTGGA
GCACACTGTGTATCCAGGTGTGGTAGAAAGTCTTAAAGTCATTACTCGTG
ATGCTTCCATGCGCGTCTGCGAGTATGCTTTTGACTACGCTATCAAAAAC
AACCGCAAGAGGGTTACTGCTGTACACAAGGCTTCTGTCATGAAACTTTC
AGATGGGTTATTCCTTCAATGTGCGCATGAAGTGGCTGAAAAACACAAGG
CCTCCGGAGTTGAGTTCCAGACGTTACTCATCGATAACGCTGCGTCCCTC
CTTGTATCTAACCCAGCTCTTTTGGACGTGATGGTGATGCCAAACCTCTA
TGGCGATATCATCTCTGACCTTTGCGCTGGTCTCATTGGGGGTCTTGGGC
TCACGCCCTCCGGAAACATGGGAACTGAATGTATGCTGGCAGAGGCCGTT
CATGGTACCGCACCAGATATTGCTGGCAAAAACATGGCGAACCCCACAGC
ATTGCTTATGAGCGCTTTAATGATGTTGCGCCATATGAATCTTCGCGTGG
AAGCTGATCTGATTGAAAAAAGTGTCCACAGTGTCTTGAGAGAAGGATCC
GTGCGGACCGGCGATATTGGTGGAACTTCTTCAACCACGGATTATACAGA
CGCGATCATTAGAAAGATGGATGAAAGTAGGGCGTAG

protein sequence of Ggra9926.t1

>Ggra9926.t1 ID=Ggra9926.t1|Name=Ggra9926.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=379bp
MIRALQRSSSRLSVIRSALYRDSPRPSDNRATFCTSAAPRQFTVTLFPGD
GIGPEISESVKRVLNAADVPINWETHIIDVHAAKPGEDLISKDALDSVRR
NGFGLKGPMATPIGKGHRSLNLTLRKELGLYANVRPCVSMPGVDTLYKDV
DVVTVRENTEGEYSGLEHTVYPGVVESLKVITRDASMRVCEYAFDYAIKN
NRKRVTAVHKASVMKLSDGLFLQCAHEVAEKHKASGVEFQTLLIDNAASL
LVSNPALLDVMVMPNLYGDIISDLCAGLIGGLGLTPSGNMGTECMLAEAV
HGTAPDIAGKNMANPTALLMSALMMLRHMNLRVEADLIEKSVHSVLREGS
VRTGDIGGTSSTTDYTDAIIRKMDESRA*

mRNA from alignment at tig00000887_pilon:111179..112315+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9926.t1 ID=Ggra9926.t1|Name=Ggra9926.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1137bp|location=Sequence derived from alignment at tig00000887_pilon:111179..112315+ (Gracilaria gracilis GNS1m male)
ATGATTCGTGCCCTCCAACGGAGTTCATCAAGGCTGTCTGTCATCAGATC
TGCTCTCTATCGCGATTCTCCACGACCCTCAGACAATCGCGCAACGTTTT
GTACCTCCGCAGCGCCGCGCCAATTCACAGTCACTCTCTTCCCCGGCGAT
GGGATCGGCCCAGAGATCTCAGAGTCTGTCAAGCGTGTTCTCAATGCAGC
TGATGTTCCCATCAACTGGGAGACCCATATCATAGACGTGCATGCTGCAA
AACCAGGCGAAGACCTCATCAGCAAGGATGCGCTTGATTCCGTCCGTCGA
AATGGTTTCGGGCTCAAGGGCCCCATGGCCACTCCTATCGGTAAGGGTCA
TAGAAGTCTTAATCTCACGCTTCGGAAAGAACTAGGGCTTTACGCGAACG
TTCGGCCTTGTGTTTCAATGCCTGGCGTTGACACGCTTTACAAAGACGTG
GATGTGGTCACCGTTCGAGAAAATACCGAAGGAGAGTACAGTGGATTGGA
GCACACTGTGTATCCAGGTGTGGTAGAAAGTCTTAAAGTCATTACTCGTG
ATGCTTCCATGCGCGTCTGCGAGTATGCTTTTGACTACGCTATCAAAAAC
AACCGCAAGAGGGTTACTGCTGTACACAAGGCTTCTGTCATGAAACTTTC
AGATGGGTTATTCCTTCAATGTGCGCATGAAGTGGCTGAAAAACACAAGG
CCTCCGGAGTTGAGTTCCAGACGTTACTCATCGATAACGCTGCGTCCCTC
CTTGTATCTAACCCAGCTCTTTTGGACGTGATGGTGATGCCAAACCTCTA
TGGCGATATCATCTCTGACCTTTGCGCTGGTCTCATTGGGGGTCTTGGGC
TCACGCCCTCCGGAAACATGGGAACTGAATGTATGCTGGCAGAGGCCGTT
CATGGTACCGCACCAGATATTGCTGGCAAAAACATGGCGAACCCCACAGC
ATTGCTTATGAGCGCTTTAATGATGTTGCGCCATATGAATCTTCGCGTGG
AAGCTGATCTGATTGAAAAAAGTGTCCACAGTGTCTTGAGAGAAGGATCC
GTGCGGACCGGCGATATTGGTGGAACTTCTTCAACCACGGATTATACAGA
CGCGATCATTAGAAAGATGGATGAAAGTAGGGCGTAG

Coding sequence (CDS) from alignment at tig00000887_pilon:111179..112315+

>Ggra9926.t1 ID=Ggra9926.t1|Name=Ggra9926.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1137bp|location=Sequence derived from alignment at tig00000887_pilon:111179..112315+ (Gracilaria gracilis GNS1m male)
ATGATTCGTGCCCTCCAACGGAGTTCATCAAGGCTGTCTGTCATCAGATC
TGCTCTCTATCGCGATTCTCCACGACCCTCAGACAATCGCGCAACGTTTT
GTACCTCCGCAGCGCCGCGCCAATTCACAGTCACTCTCTTCCCCGGCGAT
GGGATCGGCCCAGAGATCTCAGAGTCTGTCAAGCGTGTTCTCAATGCAGC
TGATGTTCCCATCAACTGGGAGACCCATATCATAGACGTGCATGCTGCAA
AACCAGGCGAAGACCTCATCAGCAAGGATGCGCTTGATTCCGTCCGTCGA
AATGGTTTCGGGCTCAAGGGCCCCATGGCCACTCCTATCGGTAAGGGTCA
TAGAAGTCTTAATCTCACGCTTCGGAAAGAACTAGGGCTTTACGCGAACG
TTCGGCCTTGTGTTTCAATGCCTGGCGTTGACACGCTTTACAAAGACGTG
GATGTGGTCACCGTTCGAGAAAATACCGAAGGAGAGTACAGTGGATTGGA
GCACACTGTGTATCCAGGTGTGGTAGAAAGTCTTAAAGTCATTACTCGTG
ATGCTTCCATGCGCGTCTGCGAGTATGCTTTTGACTACGCTATCAAAAAC
AACCGCAAGAGGGTTACTGCTGTACACAAGGCTTCTGTCATGAAACTTTC
AGATGGGTTATTCCTTCAATGTGCGCATGAAGTGGCTGAAAAACACAAGG
CCTCCGGAGTTGAGTTCCAGACGTTACTCATCGATAACGCTGCGTCCCTC
CTTGTATCTAACCCAGCTCTTTTGGACGTGATGGTGATGCCAAACCTCTA
TGGCGATATCATCTCTGACCTTTGCGCTGGTCTCATTGGGGGTCTTGGGC
TCACGCCCTCCGGAAACATGGGAACTGAATGTATGCTGGCAGAGGCCGTT
CATGGTACCGCACCAGATATTGCTGGCAAAAACATGGCGAACCCCACAGC
ATTGCTTATGAGCGCTTTAATGATGTTGCGCCATATGAATCTTCGCGTGG
AAGCTGATCTGATTGAAAAAAGTGTCCACAGTGTCTTGAGAGAAGGATCC
GTGCGGACCGGCGATATTGGTGGAACTTCTTCAACCACGGATTATACAGA
CGCGATCATTAGAAAGATGGATGAAAGTAGGGCGTAG