Ggra9922.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9922.t1
Unique NameGgra9922.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length517
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000887_piloncontigtig00000887_pilon:103379..104929 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705795.1
Preferred nameTAPT1
PFAMsDUF747
Max annot lvl2759|Eukaryota
GOsGO:0001501,GO:0001503,GO:0001701,GO:0003674,GO:0004888,GO:0004930,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005783,GO:0005789,GO:0005813,GO:0005815,GO:0005856,GO:0005929,GO:0006457,GO:0007154,GO:0007165,GO:0007186,GO:0007275,GO:0008150,GO:0009790,GO:0009791,GO:0009792,GO:0009888,GO:0009987,GO:0010638,GO:0012505,GO:0014031,GO:0014032,GO:0014033,GO:0015630,GO:0016020,GO:0016021,GO:0016520,GO:0023052,GO:0030154,GO:0030176,GO:0031224,GO:0031227,GO:0031344,GO:0031346,GO:0031984,GO:0032501,GO:0032502,GO:0033043,GO:0034975,GO:0036064,GO:0038023,GO:0042175,GO:0042995,GO:0043009,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044432,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0045724,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048706,GO:0048731,GO:0048762,GO:0048856,GO:0048863,GO:0048864,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051128,GO:0051130,GO:0051239,GO:0051240,GO:0051716,GO:0060089,GO:0060485,GO:0060491,GO:0061035,GO:0061036,GO:0065007,GO:0071944,GO:0098827,GO:0120025,GO:0120032,GO:0120034,GO:0120035,GO:0120038,GO:1902017,GO:1902115,GO:1902117,GO:1903010,GO:1903012,GO:1904888,GO:2000026
Evalue2.12e-73
EggNOG OGsKOG2490@1|root,KOG2490@2759|Eukaryota
Descriptionpositive regulation of bone development
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9922Ggra9922Gracilaria gracilis GNS1m malegenetig00000887_pilon 103379..104929 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9922.t1.stop1Ggra9922.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000887_pilon 103379..103381 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9922.t1.CDS1Ggra9922.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000887_pilon 103379..104929 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9922.t1.exon1Ggra9922.t1.exon1Gracilaria gracilis GNS1m maleexontig00000887_pilon 103379..104929 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9922.t1.start1Ggra9922.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000887_pilon 104927..104929 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9922.t1Ggra9922.t1Gracilaria gracilis GNS1m malepolypeptidetig00000887_pilon 103379..104929 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9922.t1 ID=Ggra9922.t1|Name=Ggra9922.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=517bp
MASAVSQESNTILQTPRSPKPSKRKPYALPNTEPGHRRQIPRSHTTESGL
QSSLSIASPSPSSSRAVSATNPVFVLTRHLLGIDQGPTPDALEDAWSVAT
KRRGVYNLVQVPARLERLMTLGQLICLDEFLMLFTLLPVRAILSFFRLIN
PFSGSSIRSASRASWYRTCCITWAVDVLQLSLLFITALALWLFDISWIYH
NIRGQSVIKLYVVFNVIEIFDRLCSSFGIDILDSLGWTTSSAVQFLTRDH
KDVSSRAMRARALQGIALLSRMAFDYIFALVYILIHAALLLTWVVTLNVA
INTQNNALLTLLVSNNFVELKGAVFKSFKVQNLFQIACSDAVERFQLCVF
LVVMLIVTNADEKLFKTFIVILACEVVVDWIKHAFVTKFNRISPNVYRQF
FIVICEDLSKSKSQSVVRSIGGSGVVKRTGFVTLPLAALVTRMSVGSILR
LPKTGILLLWMTLVSVKIALTISLIGYSWRHARQFRNNSEEQMDRDDDWV
QKLMQVERYDLISKNS*
back to top

spliced messenger RNA

>Ggra9922.t1 ID=Ggra9922.t1|Name=Ggra9922.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1551bp|location=Sequence derived from alignment at tig00000887_pilon:103379..104929- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCATCTGCTGTCAGTCAGGAGTCTAATACAATTCTTCAAACCCCGCG
TTCGCCGAAACCATCGAAGCGAAAACCGTATGCGTTACCAAACACAGAGC
CTGGTCACCGTCGTCAGATTCCTCGAAGTCACACCACAGAATCAGGTCTT
CAAAGCTCTCTTTCAATAGCTTCCCCCTCACCTTCTTCGAGTCGTGCAGT
ATCAGCTACGAACCCTGTTTTTGTCCTTACCAGACATCTGCTAGGAATTG
ATCAAGGCCCAACTCCAGACGCTCTGGAAGATGCATGGAGCGTAGCAACG
AAGCGTCGCGGAGTTTATAATCTTGTTCAAGTTCCCGCTCGCTTAGAGCG
TCTTATGACGCTTGGGCAACTAATATGTTTAGACGAGTTTCTCATGTTGT
TCACACTTCTACCTGTGCGAGCAATCCTCTCATTCTTTCGTTTGATCAAT
CCGTTTTCAGGAAGTTCTATTCGTTCTGCGTCCCGCGCGTCTTGGTATCG
CACATGTTGCATCACTTGGGCTGTTGACGTATTGCAGCTCAGCTTATTGT
TTATCACTGCATTGGCCTTGTGGCTCTTTGATATCAGTTGGATATACCAT
AATATACGCGGACAGTCTGTTATCAAGCTGTACGTTGTGTTCAACGTAAT
TGAGATTTTCGACAGATTATGTTCTTCATTTGGCATCGACATACTAGACA
GCCTTGGTTGGACAACTTCTTCAGCGGTTCAGTTCCTCACAAGGGACCAC
AAAGATGTCAGTTCTCGTGCGATGCGTGCCCGTGCGTTGCAAGGGATTGC
CCTATTGAGTAGAATGGCCTTTGACTACATATTCGCTCTCGTTTACATTC
TAATACATGCTGCACTTCTTCTAACATGGGTTGTAACGCTTAACGTAGCA
ATCAACACTCAAAATAACGCTTTACTAACGCTGTTAGTATCCAATAACTT
CGTAGAGCTCAAAGGTGCCGTCTTCAAGAGCTTTAAGGTGCAAAACCTCT
TTCAGATTGCTTGCTCGGACGCAGTTGAGCGTTTTCAATTATGCGTTTTC
TTGGTGGTAATGCTGATTGTCACCAACGCGGACGAGAAGTTGTTCAAGAC
ATTTATCGTCATCCTTGCCTGCGAGGTTGTTGTGGACTGGATCAAACATG
CCTTTGTAACGAAGTTCAATCGGATTTCGCCGAACGTGTACCGACAGTTT
TTCATAGTTATCTGCGAGGACCTATCTAAGTCTAAATCACAGTCAGTTGT
GCGCAGTATAGGAGGTAGCGGAGTGGTTAAGAGGACCGGATTCGTCACTC
TTCCTCTTGCAGCTCTAGTCACCCGCATGAGTGTTGGTTCTATTCTTCGT
TTGCCGAAGACTGGGATTCTGCTCCTCTGGATGACTTTAGTTTCCGTGAA
AATTGCCCTCACCATTTCACTGATAGGGTATTCTTGGCGGCATGCTCGAC
AATTCCGAAACAATTCCGAAGAGCAAATGGACAGGGATGACGATTGGGTT
CAAAAGTTAATGCAAGTTGAACGTTATGACCTCATATCGAAAAACTCTTG
A
back to top

protein sequence of Ggra9922.t1

>Ggra9922.t1 ID=Ggra9922.t1|Name=Ggra9922.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=517bp
MASAVSQESNTILQTPRSPKPSKRKPYALPNTEPGHRRQIPRSHTTESGL
QSSLSIASPSPSSSRAVSATNPVFVLTRHLLGIDQGPTPDALEDAWSVAT
KRRGVYNLVQVPARLERLMTLGQLICLDEFLMLFTLLPVRAILSFFRLIN
PFSGSSIRSASRASWYRTCCITWAVDVLQLSLLFITALALWLFDISWIYH
NIRGQSVIKLYVVFNVIEIFDRLCSSFGIDILDSLGWTTSSAVQFLTRDH
KDVSSRAMRARALQGIALLSRMAFDYIFALVYILIHAALLLTWVVTLNVA
INTQNNALLTLLVSNNFVELKGAVFKSFKVQNLFQIACSDAVERFQLCVF
LVVMLIVTNADEKLFKTFIVILACEVVVDWIKHAFVTKFNRISPNVYRQF
FIVICEDLSKSKSQSVVRSIGGSGVVKRTGFVTLPLAALVTRMSVGSILR
LPKTGILLLWMTLVSVKIALTISLIGYSWRHARQFRNNSEEQMDRDDDWV
QKLMQVERYDLISKNS*
back to top

mRNA from alignment at tig00000887_pilon:103379..104929-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9922.t1 ID=Ggra9922.t1|Name=Ggra9922.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1551bp|location=Sequence derived from alignment at tig00000887_pilon:103379..104929- (Gracilaria gracilis GNS1m male)
ATGGCATCTGCTGTCAGTCAGGAGTCTAATACAATTCTTCAAACCCCGCG
TTCGCCGAAACCATCGAAGCGAAAACCGTATGCGTTACCAAACACAGAGC
CTGGTCACCGTCGTCAGATTCCTCGAAGTCACACCACAGAATCAGGTCTT
CAAAGCTCTCTTTCAATAGCTTCCCCCTCACCTTCTTCGAGTCGTGCAGT
ATCAGCTACGAACCCTGTTTTTGTCCTTACCAGACATCTGCTAGGAATTG
ATCAAGGCCCAACTCCAGACGCTCTGGAAGATGCATGGAGCGTAGCAACG
AAGCGTCGCGGAGTTTATAATCTTGTTCAAGTTCCCGCTCGCTTAGAGCG
TCTTATGACGCTTGGGCAACTAATATGTTTAGACGAGTTTCTCATGTTGT
TCACACTTCTACCTGTGCGAGCAATCCTCTCATTCTTTCGTTTGATCAAT
CCGTTTTCAGGAAGTTCTATTCGTTCTGCGTCCCGCGCGTCTTGGTATCG
CACATGTTGCATCACTTGGGCTGTTGACGTATTGCAGCTCAGCTTATTGT
TTATCACTGCATTGGCCTTGTGGCTCTTTGATATCAGTTGGATATACCAT
AATATACGCGGACAGTCTGTTATCAAGCTGTACGTTGTGTTCAACGTAAT
TGAGATTTTCGACAGATTATGTTCTTCATTTGGCATCGACATACTAGACA
GCCTTGGTTGGACAACTTCTTCAGCGGTTCAGTTCCTCACAAGGGACCAC
AAAGATGTCAGTTCTCGTGCGATGCGTGCCCGTGCGTTGCAAGGGATTGC
CCTATTGAGTAGAATGGCCTTTGACTACATATTCGCTCTCGTTTACATTC
TAATACATGCTGCACTTCTTCTAACATGGGTTGTAACGCTTAACGTAGCA
ATCAACACTCAAAATAACGCTTTACTAACGCTGTTAGTATCCAATAACTT
CGTAGAGCTCAAAGGTGCCGTCTTCAAGAGCTTTAAGGTGCAAAACCTCT
TTCAGATTGCTTGCTCGGACGCAGTTGAGCGTTTTCAATTATGCGTTTTC
TTGGTGGTAATGCTGATTGTCACCAACGCGGACGAGAAGTTGTTCAAGAC
ATTTATCGTCATCCTTGCCTGCGAGGTTGTTGTGGACTGGATCAAACATG
CCTTTGTAACGAAGTTCAATCGGATTTCGCCGAACGTGTACCGACAGTTT
TTCATAGTTATCTGCGAGGACCTATCTAAGTCTAAATCACAGTCAGTTGT
GCGCAGTATAGGAGGTAGCGGAGTGGTTAAGAGGACCGGATTCGTCACTC
TTCCTCTTGCAGCTCTAGTCACCCGCATGAGTGTTGGTTCTATTCTTCGT
TTGCCGAAGACTGGGATTCTGCTCCTCTGGATGACTTTAGTTTCCGTGAA
AATTGCCCTCACCATTTCACTGATAGGGTATTCTTGGCGGCATGCTCGAC
AATTCCGAAACAATTCCGAAGAGCAAATGGACAGGGATGACGATTGGGTT
CAAAAGTTAATGCAAGTTGAACGTTATGACCTCATATCGAAAAACTCTTG
A
back to top

Coding sequence (CDS) from alignment at tig00000887_pilon:103379..104929-

>Ggra9922.t1 ID=Ggra9922.t1|Name=Ggra9922.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1551bp|location=Sequence derived from alignment at tig00000887_pilon:103379..104929- (Gracilaria gracilis GNS1m male)
ATGGCATCTGCTGTCAGTCAGGAGTCTAATACAATTCTTCAAACCCCGCG
TTCGCCGAAACCATCGAAGCGAAAACCGTATGCGTTACCAAACACAGAGC
CTGGTCACCGTCGTCAGATTCCTCGAAGTCACACCACAGAATCAGGTCTT
CAAAGCTCTCTTTCAATAGCTTCCCCCTCACCTTCTTCGAGTCGTGCAGT
ATCAGCTACGAACCCTGTTTTTGTCCTTACCAGACATCTGCTAGGAATTG
ATCAAGGCCCAACTCCAGACGCTCTGGAAGATGCATGGAGCGTAGCAACG
AAGCGTCGCGGAGTTTATAATCTTGTTCAAGTTCCCGCTCGCTTAGAGCG
TCTTATGACGCTTGGGCAACTAATATGTTTAGACGAGTTTCTCATGTTGT
TCACACTTCTACCTGTGCGAGCAATCCTCTCATTCTTTCGTTTGATCAAT
CCGTTTTCAGGAAGTTCTATTCGTTCTGCGTCCCGCGCGTCTTGGTATCG
CACATGTTGCATCACTTGGGCTGTTGACGTATTGCAGCTCAGCTTATTGT
TTATCACTGCATTGGCCTTGTGGCTCTTTGATATCAGTTGGATATACCAT
AATATACGCGGACAGTCTGTTATCAAGCTGTACGTTGTGTTCAACGTAAT
TGAGATTTTCGACAGATTATGTTCTTCATTTGGCATCGACATACTAGACA
GCCTTGGTTGGACAACTTCTTCAGCGGTTCAGTTCCTCACAAGGGACCAC
AAAGATGTCAGTTCTCGTGCGATGCGTGCCCGTGCGTTGCAAGGGATTGC
CCTATTGAGTAGAATGGCCTTTGACTACATATTCGCTCTCGTTTACATTC
TAATACATGCTGCACTTCTTCTAACATGGGTTGTAACGCTTAACGTAGCA
ATCAACACTCAAAATAACGCTTTACTAACGCTGTTAGTATCCAATAACTT
CGTAGAGCTCAAAGGTGCCGTCTTCAAGAGCTTTAAGGTGCAAAACCTCT
TTCAGATTGCTTGCTCGGACGCAGTTGAGCGTTTTCAATTATGCGTTTTC
TTGGTGGTAATGCTGATTGTCACCAACGCGGACGAGAAGTTGTTCAAGAC
ATTTATCGTCATCCTTGCCTGCGAGGTTGTTGTGGACTGGATCAAACATG
CCTTTGTAACGAAGTTCAATCGGATTTCGCCGAACGTGTACCGACAGTTT
TTCATAGTTATCTGCGAGGACCTATCTAAGTCTAAATCACAGTCAGTTGT
GCGCAGTATAGGAGGTAGCGGAGTGGTTAAGAGGACCGGATTCGTCACTC
TTCCTCTTGCAGCTCTAGTCACCCGCATGAGTGTTGGTTCTATTCTTCGT
TTGCCGAAGACTGGGATTCTGCTCCTCTGGATGACTTTAGTTTCCGTGAA
AATTGCCCTCACCATTTCACTGATAGGGTATTCTTGGCGGCATGCTCGAC
AATTCCGAAACAATTCCGAAGAGCAAATGGACAGGGATGACGATTGGGTT
CAAAAGTTAATGCAAGTTGAACGTTATGACCTCATATCGAAAAACTCTTG
A
back to top