Ggra9918.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9918.t1
Unique NameGgra9918.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length401
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000887_piloncontigtig00000887_pilon:92215..93417 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9918Ggra9918Gracilaria gracilis GNS1m malegenetig00000887_pilon 92215..93417 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9918.t1.start1Ggra9918.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000887_pilon 92215..92217 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9918.t1.CDS1Ggra9918.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000887_pilon 92215..93417 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9918.t1.exon1Ggra9918.t1.exon1Gracilaria gracilis GNS1m maleexontig00000887_pilon 92215..93417 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9918.t1.stop1Ggra9918.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000887_pilon 93415..93417 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9918.t1Ggra9918.t1Gracilaria gracilis GNS1m malepolypeptidetig00000887_pilon 92215..93417 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9918.t1 ID=Ggra9918.t1|Name=Ggra9918.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=401bp
MTPSSPRASPPRSPSPRSSSSSSTSSSPPPPSPPPSPPISFVSLSSSTAS
ERSASLAATGAPLAAARRRALYHEYKSLRTHALSQSPAPAAAAASASRKR
VGAAAGAGGGGGGGGAGSDAQLLRLQQLLTQLYPSPPSLRPALRALHAAR
ERLRLLRAALRDQLRAVRKLDDAANLLLLVSEHVALLISCHRAPSPPLPP
ACSARRASCLSRCERDAPAADSAAPAAATPTIPRGYKARYLRRCSVLAAE
ALAAAVDLSSYLARLLDARGQHLLVPQIHALCRPCLSIVDLPCGFTLIFR
TELLRKMALDAAAMRDVALQWRRKQWLFCLKLRRNLAACRRAVQRTMLHV
LQMRAALAEHEFVSHVRAPAPASSPPSSPPPPPPPPPRPPPPPRAEQLRV
*
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spliced messenger RNA

>Ggra9918.t1 ID=Ggra9918.t1|Name=Ggra9918.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1203bp|location=Sequence derived from alignment at tig00000887_pilon:92215..93417+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCCCTCGTCGCCGCGCGCTTCGCCGCCGCGCTCGCCGTCGCCGCG
CtcgtcgtcgtcgtcgtcgacgtcgtcgtcgCCACCGCCCCCGTCGCCGC
CGCCTTCGCCGCCCATCTCGTTCGTCTCGCTCTCGTCGTCCACCGCCTCC
GAgcgcagcgcgtcgctcgccgcgaccggcgcgccgctagccgctgcgcg
gcggcgcgcTCTCTACCACGAGTACAAGTCGCTCCGCACGCACGCGCTAT
CGCAATcgccggccccggcggcggcggcggcgagcgcctcgcgcaagcgc
gtcggcgccgccgccggcgccggtggtggtggtggcggcggcggggcggg
gagcgacgcgcagctgctgcggttgcagcagctgcTGACGCAGCTGTACC
CGTCGCCGCCGTCGCTgcgccccgcgctacgcgcgctgcacgcggcgcgt
gagcggctacgactgcttcgcgccgcgctgcgcgaccagcttcgcgcCGT
GCGCAAGCTGGACGACGCCGCCAACCTACTGCTGCTGGTGTCGGAGCACG
TGGCGCTGCTCATCTCGTGCCACCGCGCGCCGTCGCCGCCGCTGCCGCCC
GCCTGTTCCGCGCGCCGCGCGTCATGTCTGTCGCGCTGCGAGCGTGACGC
GCCCGCCGCCGATTCCGCCGCGCCCGCCGCGGCCACGCCCACCATCCCGC
GCGGCTACAAGGCGCGCTACCTGCGCCGCTGCAGCGTGCTGGCCGCCGAG
GCGCTGGCGGCCGCCGTGGACCTCAGCAGCTACCTGGCGCGGCTGCTGGA
CGCGCGCGGGCAGCACCTGTTGGTGCCGCAGATTCACGCGCTGTGTCGGC
CCTGTCTCAGCATTGTGGACCTGCCCTGCGGCTTTACGCTCATCTTCCGC
ACAGAGCTGCTGCGCAAGATGGCGCTGGACGCCGCCGCCATGCGCGACGT
CGCGCTGCAGTGGCGCCGCAAGCAGTGGCTCTTCTGCCTCAAGCTGCGCC
GCAACCTGGCCGCCTGCCGCCGCGCCGTGCAGCGCACCATGCTGCACGTG
CTGCAGATGAGGGCCGCCCTGGCCGAGCACGAGTTTGTCTCCCACGTGCG
CGCCCCCGCCCCCGCCTCATCTCCCCCTTCGTcgcctccgcccccgccgc
cgccgccgccccggccgccgccgccgccACGCGCGGAGCAACTTCGCGTG
TAG
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protein sequence of Ggra9918.t1

>Ggra9918.t1 ID=Ggra9918.t1|Name=Ggra9918.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=401bp
MTPSSPRASPPRSPSPRSSSSSSTSSSPPPPSPPPSPPISFVSLSSSTAS
ERSASLAATGAPLAAARRRALYHEYKSLRTHALSQSPAPAAAAASASRKR
VGAAAGAGGGGGGGGAGSDAQLLRLQQLLTQLYPSPPSLRPALRALHAAR
ERLRLLRAALRDQLRAVRKLDDAANLLLLVSEHVALLISCHRAPSPPLPP
ACSARRASCLSRCERDAPAADSAAPAAATPTIPRGYKARYLRRCSVLAAE
ALAAAVDLSSYLARLLDARGQHLLVPQIHALCRPCLSIVDLPCGFTLIFR
TELLRKMALDAAAMRDVALQWRRKQWLFCLKLRRNLAACRRAVQRTMLHV
LQMRAALAEHEFVSHVRAPAPASSPPSSPPPPPPPPPRPPPPPRAEQLRV
*
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mRNA from alignment at tig00000887_pilon:92215..93417+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9918.t1 ID=Ggra9918.t1|Name=Ggra9918.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1203bp|location=Sequence derived from alignment at tig00000887_pilon:92215..93417+ (Gracilaria gracilis GNS1m male)
ATGACTCCCTCGTCGCCGCGCGCTTCGCCGCCGCGCTCGCCGTCGCCGCG
CtcgtcgtcgtcgtcgtcgacgtcgtcgtcgCCACCGCCCCCGTCGCCGC
CGCCTTCGCCGCCCATCTCGTTCGTCTCGCTCTCGTCGTCCACCGCCTCC
GAgcgcagcgcgtcgctcgccgcgaccggcgcgccgctagccgctgcgcg
gcggcgcgcTCTCTACCACGAGTACAAGTCGCTCCGCACGCACGCGCTAT
CGCAATcgccggccccggcggcggcggcggcgagcgcctcgcgcaagcgc
gtcggcgccgccgccggcgccggtggtggtggtggcggcggcggggcggg
gagcgacgcgcagctgctgcggttgcagcagctgcTGACGCAGCTGTACC
CGTCGCCGCCGTCGCTgcgccccgcgctacgcgcgctgcacgcggcgcgt
gagcggctacgactgcttcgcgccgcgctgcgcgaccagcttcgcgcCGT
GCGCAAGCTGGACGACGCCGCCAACCTACTGCTGCTGGTGTCGGAGCACG
TGGCGCTGCTCATCTCGTGCCACCGCGCGCCGTCGCCGCCGCTGCCGCCC
GCCTGTTCCGCGCGCCGCGCGTCATGTCTGTCGCGCTGCGAGCGTGACGC
GCCCGCCGCCGATTCCGCCGCGCCCGCCGCGGCCACGCCCACCATCCCGC
GCGGCTACAAGGCGCGCTACCTGCGCCGCTGCAGCGTGCTGGCCGCCGAG
GCGCTGGCGGCCGCCGTGGACCTCAGCAGCTACCTGGCGCGGCTGCTGGA
CGCGCGCGGGCAGCACCTGTTGGTGCCGCAGATTCACGCGCTGTGTCGGC
CCTGTCTCAGCATTGTGGACCTGCCCTGCGGCTTTACGCTCATCTTCCGC
ACAGAGCTGCTGCGCAAGATGGCGCTGGACGCCGCCGCCATGCGCGACGT
CGCGCTGCAGTGGCGCCGCAAGCAGTGGCTCTTCTGCCTCAAGCTGCGCC
GCAACCTGGCCGCCTGCCGCCGCGCCGTGCAGCGCACCATGCTGCACGTG
CTGCAGATGAGGGCCGCCCTGGCCGAGCACGAGTTTGTCTCCCACGTGCG
CGCCCCCGCCCCCGCCTCATCTCCCCCTTCGTcgcctccgcccccgccgc
cgccgccgccccggccgccgccgccgccACGCGCGGAGCAACTTCGCGTG
TAG
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Coding sequence (CDS) from alignment at tig00000887_pilon:92215..93417+

>Ggra9918.t1 ID=Ggra9918.t1|Name=Ggra9918.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1203bp|location=Sequence derived from alignment at tig00000887_pilon:92215..93417+ (Gracilaria gracilis GNS1m male)
ATGACTCCCTCGTCGCCGCGCGCTTCGCCGCCGCGCTCGCCGTCGCCGCG
CtcgtcgtcgtcgtcgtcgacgtcgtcgtcgCCACCGCCCCCGTCGCCGC
CGCCTTCGCCGCCCATCTCGTTCGTCTCGCTCTCGTCGTCCACCGCCTCC
GAgcgcagcgcgtcgctcgccgcgaccggcgcgccgctagccgctgcgcg
gcggcgcgcTCTCTACCACGAGTACAAGTCGCTCCGCACGCACGCGCTAT
CGCAATcgccggccccggcggcggcggcggcgagcgcctcgcgcaagcgc
gtcggcgccgccgccggcgccggtggtggtggtggcggcggcggggcggg
gagcgacgcgcagctgctgcggttgcagcagctgcTGACGCAGCTGTACC
CGTCGCCGCCGTCGCTgcgccccgcgctacgcgcgctgcacgcggcgcgt
gagcggctacgactgcttcgcgccgcgctgcgcgaccagcttcgcgcCGT
GCGCAAGCTGGACGACGCCGCCAACCTACTGCTGCTGGTGTCGGAGCACG
TGGCGCTGCTCATCTCGTGCCACCGCGCGCCGTCGCCGCCGCTGCCGCCC
GCCTGTTCCGCGCGCCGCGCGTCATGTCTGTCGCGCTGCGAGCGTGACGC
GCCCGCCGCCGATTCCGCCGCGCCCGCCGCGGCCACGCCCACCATCCCGC
GCGGCTACAAGGCGCGCTACCTGCGCCGCTGCAGCGTGCTGGCCGCCGAG
GCGCTGGCGGCCGCCGTGGACCTCAGCAGCTACCTGGCGCGGCTGCTGGA
CGCGCGCGGGCAGCACCTGTTGGTGCCGCAGATTCACGCGCTGTGTCGGC
CCTGTCTCAGCATTGTGGACCTGCCCTGCGGCTTTACGCTCATCTTCCGC
ACAGAGCTGCTGCGCAAGATGGCGCTGGACGCCGCCGCCATGCGCGACGT
CGCGCTGCAGTGGCGCCGCAAGCAGTGGCTCTTCTGCCTCAAGCTGCGCC
GCAACCTGGCCGCCTGCCGCCGCGCCGTGCAGCGCACCATGCTGCACGTG
CTGCAGATGAGGGCCGCCCTGGCCGAGCACGAGTTTGTCTCCCACGTGCG
CGCCCCCGCCCCCGCCTCATCTCCCCCTTCGTcgcctccgcccccgccgc
cgccgccgccccggccgccgccgccgccACGCGCGGAGCAACTTCGCGTG
TAG
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