Ggra9912.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9912.t1
Unique NameGgra9912.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length549
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000887_piloncontigtig00000887_pilon:76326..77972 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog42099.EPrPV00000021329
PFAMsC2
Max annot lvl2759|Eukaryota
Evalue2.61e-35
EggNOG OGs2BVDY@1|root,2S261@2759|Eukaryota
DescriptionProtein kinase C conserved region 2 (CalB)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9912Ggra9912Gracilaria gracilis GNS1m malegenetig00000887_pilon 76326..77972 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9912.t1.stop1Ggra9912.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000887_pilon 76326..76328 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9912.t1.CDS1Ggra9912.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000887_pilon 76326..77972 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9912.t1.exon1Ggra9912.t1.exon1Gracilaria gracilis GNS1m maleexontig00000887_pilon 76326..77972 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9912.t1.start1Ggra9912.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000887_pilon 77970..77972 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9912.t1Ggra9912.t1Gracilaria gracilis GNS1m malepolypeptidetig00000887_pilon 76326..77972 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9912.t1 ID=Ggra9912.t1|Name=Ggra9912.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=549bp
MPAEPIQVRLMRASGLPAVNKVGNMSDPYAVLQIVRTKETHTSHYCLNTV
NPTWYQCFVFHNVNPSDVLAISLFDRNLVKSDVPIGTAFISIGHAISHAS
AVVSQAAFEASQSASALNEPHSSHQSVPLPFQNARDTTIPPPPHSSSSIP
LSSIPPSYYPPPDSPPYSGTTSFDTPRSTPSTSSISSADGLHFYHPSASD
TFQPLQPHLSNEAGIKNFSEPGSPPGGQSALADAPTQRSMTMTYAVAPQG
NITLVVAPASVANLCAMVPSKLYKRFQINRTLEQITNMHNRPSQTHGSLN
AIGKNVGRFVKKVKPLQAAIDSVHPIQSVFQEHSTWKITMLGVLDVFASK
RHGWNRSYKAAQKIFQGPGSVVATQIVRLQHAYLYGGAVSVRPLQSLREG
LQEVRGSILDGKDFCEVLDYGHRRGKPRLFTYVLMPTKLYLAETGAEFFR
DMMSKHAMHSSASTEVVYAGELQFAVSGYGTGNPYAKLIIDNNSGTYAPG
KEDLPKVAEVFRRNFPGLEVITLDFRDPYLLTLSNQLPPTNLQEETVY*
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spliced messenger RNA

>Ggra9912.t1 ID=Ggra9912.t1|Name=Ggra9912.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1647bp|location=Sequence derived from alignment at tig00000887_pilon:76326..77972- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGCCGAACCCATCCAGGTGCGCCTCATGCGCGCGTCCGGCCTGCC
GGCCGTCAACAAGGTCGGCAATATGTCCGACCCCTACGCCGTTTTGCAGA
TTGTGCGCACAAAGGAGACCCACACCTCGCATTATTGCCTCAACACTGTC
AACCCTACGTGGTACCAATGCTTCGTGTTCCACAACGTCAACCCCAGCGA
TGTCTTGGCCATTAGCCTCTTTGACAGGAACCTTGTCAAGAGCGACGTTC
CAATAGGCACCGCCTTCATCTCCATCGGCCACGCCATATCGCACGCCTCC
GCTGTCGTGTCACAGGCTGCTTTCGAAGCCTCCCAGTCCGCTTCCGCCCT
CAATGAGCCGCATTCATCTCACCAATCCGTTCCGCTGCCCTTCCAGAACG
CGCGCGATACCACCATTCCCCCACCGCCCCATTCATCCTCTTCCATTCCG
CTCTCCTCCATCCCGCCCTCGTATTACCCTCCACCGGACAGTCCGCCGTA
TTCCGGCACCACCTCCTTCGATACACCGCGCTCCACACCATCCACTTCAA
GCATTTCTTCCGCCGATGGGCTGCATTTCTATCATCCCTCCGCCAGTGAT
ACTTTTCAACCTCTGCAGCCGCATCTGTCCAACGAAGCGGGTATAAAGAA
CTTTTCCGAACCGGGCTCGCCTCCCGGAGGCCAGTCCGCTCTAGCAGATG
CTCCTACGCAGCGATCTATGACCATGACCTACGCCGTTGCGCCGCAAGGC
AACATCACCCTCGTCGTCGCCCCGGCCTCCGTCGCGAACCTTTGCGCTAT
GGTTCCGTCAAAGCTCTACAAGCGCTTTCAGATCAATCGCACTCTGGAAC
AAATCACTAATATGCACAACAGACCCTCACAGACTCATGGCAGTCTCAAT
GCAATCGGCAAAAATGTTGGAAGGTTCGTCAAGAAAGTGAAGCCCCTCCA
GGCTGCAATCGACTCTGTGCATCCCATTCAGTCCGTGTTCCAAGAGCATT
CCACGTGGAAAATCACCATGCTCGGTGTATTGGACGTCTTTGCCAGCAAA
CGTCACGGATGGAATCGATCGTACAAGGCCGCCCAAAAAATCTTTCAGGG
CCCGGGTTCAGTGGTCGCAACGCAAATCGTTAGGTTGCAACACGCGTATC
TATATGGTGGCGCCGTTTCCGTCAGACCGTTGCAAAGTCTGCGGGAAGGT
TTGCAAGAAGTCCGCGGCAGCATACTTGACGGCAAGGACTTTTGTGAGGT
GCTTGATTACGGTCATAGACGGGGCAAGCCACGTTTGTTTACATATGTAC
TAATGCCCACAAAATTGTACCTGGCGGAAACGGGAGCCGAGTTCTTCCGC
GATATGATGTCCAAGCACGCAATGCATTCCTCGGCGAGCACGGAAGTCGT
ATACGCTGGCGAATTACAATTCGCTGTTTCCGGGTATGGGACTGGAAACC
CCTACGCCAAGTTGATAATCGACAATAATTCCGGAACCTACGCCCCGGGC
AAAGAGGACCTACCGAAGGTAGCAGAAGTGTTCCGTCGCAACTTCCCGGG
CCTTGAGGTGATTACCCTTGACTTCCGAGACCCATACTTGCTTACACTTA
GTAATCAATTACCCCCTACTAACCTGCAAGAAGAAACCGTTTACTAA
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protein sequence of Ggra9912.t1

>Ggra9912.t1 ID=Ggra9912.t1|Name=Ggra9912.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=549bp
MPAEPIQVRLMRASGLPAVNKVGNMSDPYAVLQIVRTKETHTSHYCLNTV
NPTWYQCFVFHNVNPSDVLAISLFDRNLVKSDVPIGTAFISIGHAISHAS
AVVSQAAFEASQSASALNEPHSSHQSVPLPFQNARDTTIPPPPHSSSSIP
LSSIPPSYYPPPDSPPYSGTTSFDTPRSTPSTSSISSADGLHFYHPSASD
TFQPLQPHLSNEAGIKNFSEPGSPPGGQSALADAPTQRSMTMTYAVAPQG
NITLVVAPASVANLCAMVPSKLYKRFQINRTLEQITNMHNRPSQTHGSLN
AIGKNVGRFVKKVKPLQAAIDSVHPIQSVFQEHSTWKITMLGVLDVFASK
RHGWNRSYKAAQKIFQGPGSVVATQIVRLQHAYLYGGAVSVRPLQSLREG
LQEVRGSILDGKDFCEVLDYGHRRGKPRLFTYVLMPTKLYLAETGAEFFR
DMMSKHAMHSSASTEVVYAGELQFAVSGYGTGNPYAKLIIDNNSGTYAPG
KEDLPKVAEVFRRNFPGLEVITLDFRDPYLLTLSNQLPPTNLQEETVY*
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mRNA from alignment at tig00000887_pilon:76326..77972-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9912.t1 ID=Ggra9912.t1|Name=Ggra9912.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1647bp|location=Sequence derived from alignment at tig00000887_pilon:76326..77972- (Gracilaria gracilis GNS1m male)
ATGCCCGCCGAACCCATCCAGGTGCGCCTCATGCGCGCGTCCGGCCTGCC
GGCCGTCAACAAGGTCGGCAATATGTCCGACCCCTACGCCGTTTTGCAGA
TTGTGCGCACAAAGGAGACCCACACCTCGCATTATTGCCTCAACACTGTC
AACCCTACGTGGTACCAATGCTTCGTGTTCCACAACGTCAACCCCAGCGA
TGTCTTGGCCATTAGCCTCTTTGACAGGAACCTTGTCAAGAGCGACGTTC
CAATAGGCACCGCCTTCATCTCCATCGGCCACGCCATATCGCACGCCTCC
GCTGTCGTGTCACAGGCTGCTTTCGAAGCCTCCCAGTCCGCTTCCGCCCT
CAATGAGCCGCATTCATCTCACCAATCCGTTCCGCTGCCCTTCCAGAACG
CGCGCGATACCACCATTCCCCCACCGCCCCATTCATCCTCTTCCATTCCG
CTCTCCTCCATCCCGCCCTCGTATTACCCTCCACCGGACAGTCCGCCGTA
TTCCGGCACCACCTCCTTCGATACACCGCGCTCCACACCATCCACTTCAA
GCATTTCTTCCGCCGATGGGCTGCATTTCTATCATCCCTCCGCCAGTGAT
ACTTTTCAACCTCTGCAGCCGCATCTGTCCAACGAAGCGGGTATAAAGAA
CTTTTCCGAACCGGGCTCGCCTCCCGGAGGCCAGTCCGCTCTAGCAGATG
CTCCTACGCAGCGATCTATGACCATGACCTACGCCGTTGCGCCGCAAGGC
AACATCACCCTCGTCGTCGCCCCGGCCTCCGTCGCGAACCTTTGCGCTAT
GGTTCCGTCAAAGCTCTACAAGCGCTTTCAGATCAATCGCACTCTGGAAC
AAATCACTAATATGCACAACAGACCCTCACAGACTCATGGCAGTCTCAAT
GCAATCGGCAAAAATGTTGGAAGGTTCGTCAAGAAAGTGAAGCCCCTCCA
GGCTGCAATCGACTCTGTGCATCCCATTCAGTCCGTGTTCCAAGAGCATT
CCACGTGGAAAATCACCATGCTCGGTGTATTGGACGTCTTTGCCAGCAAA
CGTCACGGATGGAATCGATCGTACAAGGCCGCCCAAAAAATCTTTCAGGG
CCCGGGTTCAGTGGTCGCAACGCAAATCGTTAGGTTGCAACACGCGTATC
TATATGGTGGCGCCGTTTCCGTCAGACCGTTGCAAAGTCTGCGGGAAGGT
TTGCAAGAAGTCCGCGGCAGCATACTTGACGGCAAGGACTTTTGTGAGGT
GCTTGATTACGGTCATAGACGGGGCAAGCCACGTTTGTTTACATATGTAC
TAATGCCCACAAAATTGTACCTGGCGGAAACGGGAGCCGAGTTCTTCCGC
GATATGATGTCCAAGCACGCAATGCATTCCTCGGCGAGCACGGAAGTCGT
ATACGCTGGCGAATTACAATTCGCTGTTTCCGGGTATGGGACTGGAAACC
CCTACGCCAAGTTGATAATCGACAATAATTCCGGAACCTACGCCCCGGGC
AAAGAGGACCTACCGAAGGTAGCAGAAGTGTTCCGTCGCAACTTCCCGGG
CCTTGAGGTGATTACCCTTGACTTCCGAGACCCATACTTGCTTACACTTA
GTAATCAATTACCCCCTACTAACCTGCAAGAAGAAACCGTTTACTAA
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Coding sequence (CDS) from alignment at tig00000887_pilon:76326..77972-

>Ggra9912.t1 ID=Ggra9912.t1|Name=Ggra9912.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1647bp|location=Sequence derived from alignment at tig00000887_pilon:76326..77972- (Gracilaria gracilis GNS1m male)
ATGCCCGCCGAACCCATCCAGGTGCGCCTCATGCGCGCGTCCGGCCTGCC
GGCCGTCAACAAGGTCGGCAATATGTCCGACCCCTACGCCGTTTTGCAGA
TTGTGCGCACAAAGGAGACCCACACCTCGCATTATTGCCTCAACACTGTC
AACCCTACGTGGTACCAATGCTTCGTGTTCCACAACGTCAACCCCAGCGA
TGTCTTGGCCATTAGCCTCTTTGACAGGAACCTTGTCAAGAGCGACGTTC
CAATAGGCACCGCCTTCATCTCCATCGGCCACGCCATATCGCACGCCTCC
GCTGTCGTGTCACAGGCTGCTTTCGAAGCCTCCCAGTCCGCTTCCGCCCT
CAATGAGCCGCATTCATCTCACCAATCCGTTCCGCTGCCCTTCCAGAACG
CGCGCGATACCACCATTCCCCCACCGCCCCATTCATCCTCTTCCATTCCG
CTCTCCTCCATCCCGCCCTCGTATTACCCTCCACCGGACAGTCCGCCGTA
TTCCGGCACCACCTCCTTCGATACACCGCGCTCCACACCATCCACTTCAA
GCATTTCTTCCGCCGATGGGCTGCATTTCTATCATCCCTCCGCCAGTGAT
ACTTTTCAACCTCTGCAGCCGCATCTGTCCAACGAAGCGGGTATAAAGAA
CTTTTCCGAACCGGGCTCGCCTCCCGGAGGCCAGTCCGCTCTAGCAGATG
CTCCTACGCAGCGATCTATGACCATGACCTACGCCGTTGCGCCGCAAGGC
AACATCACCCTCGTCGTCGCCCCGGCCTCCGTCGCGAACCTTTGCGCTAT
GGTTCCGTCAAAGCTCTACAAGCGCTTTCAGATCAATCGCACTCTGGAAC
AAATCACTAATATGCACAACAGACCCTCACAGACTCATGGCAGTCTCAAT
GCAATCGGCAAAAATGTTGGAAGGTTCGTCAAGAAAGTGAAGCCCCTCCA
GGCTGCAATCGACTCTGTGCATCCCATTCAGTCCGTGTTCCAAGAGCATT
CCACGTGGAAAATCACCATGCTCGGTGTATTGGACGTCTTTGCCAGCAAA
CGTCACGGATGGAATCGATCGTACAAGGCCGCCCAAAAAATCTTTCAGGG
CCCGGGTTCAGTGGTCGCAACGCAAATCGTTAGGTTGCAACACGCGTATC
TATATGGTGGCGCCGTTTCCGTCAGACCGTTGCAAAGTCTGCGGGAAGGT
TTGCAAGAAGTCCGCGGCAGCATACTTGACGGCAAGGACTTTTGTGAGGT
GCTTGATTACGGTCATAGACGGGGCAAGCCACGTTTGTTTACATATGTAC
TAATGCCCACAAAATTGTACCTGGCGGAAACGGGAGCCGAGTTCTTCCGC
GATATGATGTCCAAGCACGCAATGCATTCCTCGGCGAGCACGGAAGTCGT
ATACGCTGGCGAATTACAATTCGCTGTTTCCGGGTATGGGACTGGAAACC
CCTACGCCAAGTTGATAATCGACAATAATTCCGGAACCTACGCCCCGGGC
AAAGAGGACCTACCGAAGGTAGCAGAAGTGTTCCGTCGCAACTTCCCGGG
CCTTGAGGTGATTACCCTTGACTTCCGAGACCCATACTTGCTTACACTTA
GTAATCAATTACCCCCTACTAACCTGCAAGAAGAAACCGTTTACTAA
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