Ggra9909.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9909.t1
Unique NameGgra9909.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length289
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000887_piloncontigtig00000887_pilon:67318..68184 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1173023.KE650771_gene5032
Preferred namehisB
PFAMsIGPD
Max annot lvl1117|Cyanobacteria
KEGG rclassRC00932
KEGG koko:K01693
KEGG ReactionR03457
KEGG Pathwayko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230
KEGG ModuleM00026
GOsGO:0000105,GO:0003674,GO:0003824,GO:0004424,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
Evalue4.56e-99
EggNOG OGsCOG0131@1|root,COG0131@2|Bacteria,1G08H@1117|Cyanobacteria,1JH0R@1189|Stigonemataceae
EC4.2.1.19
DescriptionImidazoleglycerol-phosphate dehydratase
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9909Ggra9909Gracilaria gracilis GNS1m malegenetig00000887_pilon 67318..68184 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9909.t1.stop1Ggra9909.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000887_pilon 67318..67320 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9909.t1.CDS1Ggra9909.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000887_pilon 67318..68184 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9909.t1.exon1Ggra9909.t1.exon1Gracilaria gracilis GNS1m maleexontig00000887_pilon 67318..68184 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9909.t1.start1Ggra9909.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000887_pilon 68182..68184 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9909.t1Ggra9909.t1Gracilaria gracilis GNS1m malepolypeptidetig00000887_pilon 67318..68184 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9909.t1 ID=Ggra9909.t1|Name=Ggra9909.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=289bp
MTAPTGAQMRSAAFCFTPSLPRPWRTRRATTHCRPAPRVAPLCLSSPAPT
PSPPTPSPPTPSPPTPSPPSTHVAPSHASRPPRIATVSRTTNETAITLTV
NVDGTGVCDVHTGIPFLDHMLAQLCSHGLFDLHVRAKGDLWIDDHHTNED
IAITLGMALSKALADKKGIRRFGHFVAPLDESLVEVVLDFSGRAHCEYSL
QIPTQRVGTYDTQLVREFYHAVAGNAQMTLHVIQRSGINSHHIIEASFKS
FARAMRMAVEYDPRSINSIPSSKGVLTDAAALESNPTT*
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spliced messenger RNA

>Ggra9909.t1 ID=Ggra9909.t1|Name=Ggra9909.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=867bp|location=Sequence derived from alignment at tig00000887_pilon:67318..68184- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGCTCCCACCGGCGCTCAGATGCGCTCAGCCGCCTTTTGCTTCAC
CCCTTCTCTACCGCGCCCGTGGCGCACGCGCCGCGCCACCACTCACTGCC
GACCCGCACCGCGCGTCGCTCCGCTTTGTCTTTCCTCGCCGGCGCCCACT
CCCTCGCCGCCGACTCCCTCGCCGCCGACTCCCTCGCCGCCGACTCCCTC
GCCGCCGTCCACGCACGTCGCGCCGTCGCACGCGTCGCGCCCGCCCAGAA
TCGCCACCGTGTCCCGCACCACCAACGAGACCGCCATCACGCTCACCGTC
AACGTCGACGGCACCGGCGTGTGCGATGTGCACACCGGCATTCCCTTTCT
GGACCACATGCTTGCGCAGCTTTGTTCGCACGGCTTGTTCGATCTTCACG
TGCGCGCCAAGGGCGACTTGTGGATTGATGATCATCATACCAACGAGGAT
ATTGCAATCACGCTGGGTATGGCCCTTTCTAAAGCGCTGGCCGACAAGAA
GGGCATTCGTCGTTTTGGTCACTTTGTCGCCCCGCTTGATGAGAGCCTCG
TGGAAGTCGTGCTGGATTTCTCGGGACGTGCTCATTGTGAATACTCGTTG
CAAATCCCCACACAGAGGGTGGGAACTTATGACACGCAGTTGGTTCGAGA
GTTTTATCACGCCGTTGCCGGCAACGCTCAGATGACTTTGCATGTCATTC
AACGCTCTGGTATCAATAGCCATCATATCATCGAGGCTAGCTTTAAGTCG
TTTGCAAGAGCCATGCGCATGGCCGTCGAGTATGATCCTAGATCTATCAA
TTCTATCCCAAGTTCTAAGGGTGTCTTAACTGATGCTGCCGCGCTTGAAT
CCAACCCCACTACCTAA
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protein sequence of Ggra9909.t1

>Ggra9909.t1 ID=Ggra9909.t1|Name=Ggra9909.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=289bp
MTAPTGAQMRSAAFCFTPSLPRPWRTRRATTHCRPAPRVAPLCLSSPAPT
PSPPTPSPPTPSPPTPSPPSTHVAPSHASRPPRIATVSRTTNETAITLTV
NVDGTGVCDVHTGIPFLDHMLAQLCSHGLFDLHVRAKGDLWIDDHHTNED
IAITLGMALSKALADKKGIRRFGHFVAPLDESLVEVVLDFSGRAHCEYSL
QIPTQRVGTYDTQLVREFYHAVAGNAQMTLHVIQRSGINSHHIIEASFKS
FARAMRMAVEYDPRSINSIPSSKGVLTDAAALESNPTT*
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mRNA from alignment at tig00000887_pilon:67318..68184-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9909.t1 ID=Ggra9909.t1|Name=Ggra9909.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=867bp|location=Sequence derived from alignment at tig00000887_pilon:67318..68184- (Gracilaria gracilis GNS1m male)
ATGACCGCTCCCACCGGCGCTCAGATGCGCTCAGCCGCCTTTTGCTTCAC
CCCTTCTCTACCGCGCCCGTGGCGCACGCGCCGCGCCACCACTCACTGCC
GACCCGCACCGCGCGTCGCTCCGCTTTGTCTTTCCTCGCCGGCGCCCACT
CCCTCGCCGCCGACTCCCTCGCCGCCGACTCCCTCGCCGCCGACTCCCTC
GCCGCCGTCCACGCACGTCGCGCCGTCGCACGCGTCGCGCCCGCCCAGAA
TCGCCACCGTGTCCCGCACCACCAACGAGACCGCCATCACGCTCACCGTC
AACGTCGACGGCACCGGCGTGTGCGATGTGCACACCGGCATTCCCTTTCT
GGACCACATGCTTGCGCAGCTTTGTTCGCACGGCTTGTTCGATCTTCACG
TGCGCGCCAAGGGCGACTTGTGGATTGATGATCATCATACCAACGAGGAT
ATTGCAATCACGCTGGGTATGGCCCTTTCTAAAGCGCTGGCCGACAAGAA
GGGCATTCGTCGTTTTGGTCACTTTGTCGCCCCGCTTGATGAGAGCCTCG
TGGAAGTCGTGCTGGATTTCTCGGGACGTGCTCATTGTGAATACTCGTTG
CAAATCCCCACACAGAGGGTGGGAACTTATGACACGCAGTTGGTTCGAGA
GTTTTATCACGCCGTTGCCGGCAACGCTCAGATGACTTTGCATGTCATTC
AACGCTCTGGTATCAATAGCCATCATATCATCGAGGCTAGCTTTAAGTCG
TTTGCAAGAGCCATGCGCATGGCCGTCGAGTATGATCCTAGATCTATCAA
TTCTATCCCAAGTTCTAAGGGTGTCTTAACTGATGCTGCCGCGCTTGAAT
CCAACCCCACTACCTAA
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Coding sequence (CDS) from alignment at tig00000887_pilon:67318..68184-

>Ggra9909.t1 ID=Ggra9909.t1|Name=Ggra9909.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=867bp|location=Sequence derived from alignment at tig00000887_pilon:67318..68184- (Gracilaria gracilis GNS1m male)
ATGACCGCTCCCACCGGCGCTCAGATGCGCTCAGCCGCCTTTTGCTTCAC
CCCTTCTCTACCGCGCCCGTGGCGCACGCGCCGCGCCACCACTCACTGCC
GACCCGCACCGCGCGTCGCTCCGCTTTGTCTTTCCTCGCCGGCGCCCACT
CCCTCGCCGCCGACTCCCTCGCCGCCGACTCCCTCGCCGCCGACTCCCTC
GCCGCCGTCCACGCACGTCGCGCCGTCGCACGCGTCGCGCCCGCCCAGAA
TCGCCACCGTGTCCCGCACCACCAACGAGACCGCCATCACGCTCACCGTC
AACGTCGACGGCACCGGCGTGTGCGATGTGCACACCGGCATTCCCTTTCT
GGACCACATGCTTGCGCAGCTTTGTTCGCACGGCTTGTTCGATCTTCACG
TGCGCGCCAAGGGCGACTTGTGGATTGATGATCATCATACCAACGAGGAT
ATTGCAATCACGCTGGGTATGGCCCTTTCTAAAGCGCTGGCCGACAAGAA
GGGCATTCGTCGTTTTGGTCACTTTGTCGCCCCGCTTGATGAGAGCCTCG
TGGAAGTCGTGCTGGATTTCTCGGGACGTGCTCATTGTGAATACTCGTTG
CAAATCCCCACACAGAGGGTGGGAACTTATGACACGCAGTTGGTTCGAGA
GTTTTATCACGCCGTTGCCGGCAACGCTCAGATGACTTTGCATGTCATTC
AACGCTCTGGTATCAATAGCCATCATATCATCGAGGCTAGCTTTAAGTCG
TTTGCAAGAGCCATGCGCATGGCCGTCGAGTATGATCCTAGATCTATCAA
TTCTATCCCAAGTTCTAAGGGTGTCTTAACTGATGCTGCCGCGCTTGAAT
CCAACCCCACTACCTAA
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