Ggra9906.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9906.t1
Unique Name	Ggra9906.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	709

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000887_pilon	contig	tig00000887_pilon:58051..60177 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708507.1
PFAMs	Nucleotid_trans
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K20892
Evalue	1.23e-308
EggNOG OGs	2CMQE@1\|root,2QRDX@2759\|Eukaryota
Description	transferase activity, transferring glycosyl groups
COG category	S
CAZy	GT77
BRITE	ko00000,ko01000,ko01003

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9906	Ggra9906	Gracilaria gracilis GNS1m male	gene	tig00000887_pilon 58051..60177 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9906.t1.start1	Ggra9906.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000887_pilon 58051..58053 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9906.t1.CDS1	Ggra9906.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000887_pilon 58051..60177 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9906.t1.exon1	Ggra9906.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000887_pilon 58051..60177 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9906.t1.stop1	Ggra9906.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000887_pilon 60175..60177 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9906.t1	Ggra9906.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000887_pilon 58051..60177 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000887_pilon:58051..60177+
coding sequence from alignment at tig00000887_pilon:58051..60177+

mRNA sequence

>Ggra9906.t1 ID=Ggra9906.t1|Name=Ggra9906.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=709bp
MRRDRDREYRRSNKSSSKQNNNISSWLFFWSAILLLISFVQLRNPQSHSF
YRGTLRLPEHAEGEKVGDFSDRVDDLSIEIFSAPKPFIGEDKSNNERAIR
SWLRLNPTPRVTLLGYETGYEEAAEEFGLHIERRVDKNFLGVPLFNSMFH
RANDSKAMVTVIINGDILLFDDFVQTLKKVISNFEHFLVVAARYDVDKLP
DNLEDTDPDYVRKIRQHVLSTGTLHTYGGMDVWAWNAQGPRLFDPVMPHF
IFGRGKYDNWLTHETIAAGRRQVVDASETCLTVHVRHDYHLVTGGGGGDA
KGAGKRRLLGAFWSEGKKSKFELFINIYLSLHVGSYTNQMGNVLFAPWKL
SLCMEPMGMCLLKRKRPGICNCEFSSFVSNTQTDPVVKNGSRVIRCGMIS
VETKENFVIPVTVPEGSTEAPAFGLPLTMKSVIEKIVINNTIILSALNYG
YRGIMMNWVCNMRHLGITNFVIAALDPDLYKFAYTRGLPTYLENTIFQGL
NSSIISDASYGSDSFKQLTKMKSRVVVRILKEGYNVVWTDSDIIYFRNPL
QDMWAYNADLSIQTNAPDNEPMNGRRRLNSGLYLARSNPATIKAFEDIIV
FASKSRMSEQPCFYDVMCGKEGQNAEGDDTCKYNGMVVKLLNRHLYPNGI
TDGIWDTTPKKIPEKFPHLYILHNNWVKGADGKRDRFERHNFILYDRESE
LCVYPETW*

spliced messenger RNA

>Ggra9906.t1 ID=Ggra9906.t1|Name=Ggra9906.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2127bp|location=Sequence derived from alignment at tig00000887_pilon:58051..60177+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGAAGGGACCGCGATCGCGAGTATAGGAGAAGCAACAAAAGCTCATC
GAAACAAAACAACAACATTTCATCATGGCTCTTCTTCTGGTCGGCAATCC
TTCTCTTGATAAGCTTTGTGCAACTTCGCAATCCCCAATCACATTCGTTT
TATCGGGGGACTCTTAGACTACCTGAGCACGCAGAGGGCGAAAAGGTTGG
TGATTTTAGTGATAGGGTGGATGATCTGTCGATAGAGATCTTTTCCGCAC
CCAAGCCCTTTATTGGAGAAGATAAGTCAAACAACGAGAGAGCAATACGA
TCGTGGCTGCGACTTAACCCTACGCCGAGGGTGACATTGCTGGGATACGA
AACTGGATATGAGGAAGCTGCGGAGGAGTTTGGATTGCACATTGAACGGC
GGGTTGACAAGAACTTTCTTGGAGTACCACTGTTCAACTCCATGTTTCAT
CGGGCTAATGATTCGAAGGCAATGGTTACAGTTATCATCAATGGTGATAT
TCTGCTGTTTGATGACTTTGTTCAAACATTGAAGAAAGTTATCTCCAACT
TCGAGCACTTTCTCGTGGTTGCAGCTCGTTACGATGTGGACAAGTTGCCG
GATAATTTAGAAGATACAGACCCAGATTATGTGCGCAAAATCCGTCAGCA
TGTTCTGTCAACTGGTACTCTGCATACTTATGGTGGAATGGATGTCTGGG
CTTGGAACGCACAAGGGCCTAGACTGTTCGATCCGGTAATGCCGCATTTC
ATCTTTGGTCGAGGAAAGTACGACAACTGGCTCACTCATGAAACGATCGC
AGCTGGAAGAAGGCAAGTCGTTGACGCCTCGGAGACTTGTTTGACTGTTC
ATGTTCGCCATGATTACCATCTCGTGACCGGGGGCGGCGGCGGCGATGCC
AAAGGTGCGGGAAAGAGACGATTATTGGGCGCATTTTGGTCCGAAGGTAA
AAAGTCCAAGTTCGAACTCTTCATCAATATCTACCTCAGCCTGCATGTCG
GGTCGTATACCAATCAGATGGGAAACGTTCTGTTTGCGCCATGGAAGCTT
TCGTTGTGTATGGAGCCGATGGGAATGTGCCTTCTAAAACGAAAGAGACC
TGGTATATGCAACTGTGAATTCTCAAGTTTTGTTAGCAATACGCAAACCG
ATCCTGTTGTTAAAAACGGGTCAAGGGTTATTCGATGTGGGATGATCTCG
GTAGAGACAAAAGAAAACTTCGTTATACCAGTTACTGTTCCCGAAGGATC
AACAGAGGCTCCAGCTTTTGGTCTCCCGCTCACAATGAAGTCTGTGATTG
AAAAAATTGTTATCAACAACACTATCATACTATCAGCACTCAACTACGGT
TATCGCGGGATCATGATGAATTGGGTTTGCAATATGAGACACTTGGGGAT
AACAAATTTTGTTATTGCCGCATTAGATCCAGATTTGTACAAGTTCGCAT
ATACTCGCGGCTTGCCGACATATCTCGAGAACACAATCTTTCAAGGATTG
AACTCTTCTATTATCAGCGACGCCTCATATGGGTCTGATTCTTTCAAGCA
GTTGACGAAGATGAAATCGCGTGTCGTGGTTCGCATCTTAAAGGAGGGGT
ATAATGTCGTGTGGACAGACAGTGATATTATCTACTTTCGGAATCCATTG
CAAGATATGTGGGCGTATAACGCTGATCTCTCAATCCAGACGAATGCCCC
TGACAACGAACCAATGAATGGCAGACGAAGATTAAATTCTGGCCTTTATC
TCGCGAGAAGCAATCCGGCCACCATAAAGGCGTTCGAAGACATTATTGTC
TTCGCGTCTAAATCACGAATGTCTGAACAACCCTGCTTCTATGATGTCAT
GTGCGGCAAAGAGGGCCAAAATGCCGAAGGAGATGATACGTGCAAATACA
ACGGAATGGTTGTCAAACTCCTTAACCGTCATCTCTATCCCAATGGTATT
ACCGATGGAATATGGGATACTACTCCGAAGAAAATCCCAGAAAAGTTCCC
TCACCTTTACATTCTTCACAACAATTGGGTGAAAGGTGCCGATGGCAAAA
GAGACCGATTTGAGCGCCACAACTTTATTCTGTACGACAGAGAATCAGAA
TTGTGCGTATATCCAGAAACATGGTAG

protein sequence of Ggra9906.t1

>Ggra9906.t1 ID=Ggra9906.t1|Name=Ggra9906.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=709bp
MRRDRDREYRRSNKSSSKQNNNISSWLFFWSAILLLISFVQLRNPQSHSF
YRGTLRLPEHAEGEKVGDFSDRVDDLSIEIFSAPKPFIGEDKSNNERAIR
SWLRLNPTPRVTLLGYETGYEEAAEEFGLHIERRVDKNFLGVPLFNSMFH
RANDSKAMVTVIINGDILLFDDFVQTLKKVISNFEHFLVVAARYDVDKLP
DNLEDTDPDYVRKIRQHVLSTGTLHTYGGMDVWAWNAQGPRLFDPVMPHF
IFGRGKYDNWLTHETIAAGRRQVVDASETCLTVHVRHDYHLVTGGGGGDA
KGAGKRRLLGAFWSEGKKSKFELFINIYLSLHVGSYTNQMGNVLFAPWKL
SLCMEPMGMCLLKRKRPGICNCEFSSFVSNTQTDPVVKNGSRVIRCGMIS
VETKENFVIPVTVPEGSTEAPAFGLPLTMKSVIEKIVINNTIILSALNYG
YRGIMMNWVCNMRHLGITNFVIAALDPDLYKFAYTRGLPTYLENTIFQGL
NSSIISDASYGSDSFKQLTKMKSRVVVRILKEGYNVVWTDSDIIYFRNPL
QDMWAYNADLSIQTNAPDNEPMNGRRRLNSGLYLARSNPATIKAFEDIIV
FASKSRMSEQPCFYDVMCGKEGQNAEGDDTCKYNGMVVKLLNRHLYPNGI
TDGIWDTTPKKIPEKFPHLYILHNNWVKGADGKRDRFERHNFILYDRESE
LCVYPETW*

mRNA from alignment at tig00000887_pilon:58051..60177+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9906.t1 ID=Ggra9906.t1|Name=Ggra9906.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2127bp|location=Sequence derived from alignment at tig00000887_pilon:58051..60177+ (Gracilaria gracilis GNS1m male)
ATGCGAAGGGACCGCGATCGCGAGTATAGGAGAAGCAACAAAAGCTCATC
GAAACAAAACAACAACATTTCATCATGGCTCTTCTTCTGGTCGGCAATCC
TTCTCTTGATAAGCTTTGTGCAACTTCGCAATCCCCAATCACATTCGTTT
TATCGGGGGACTCTTAGACTACCTGAGCACGCAGAGGGCGAAAAGGTTGG
TGATTTTAGTGATAGGGTGGATGATCTGTCGATAGAGATCTTTTCCGCAC
CCAAGCCCTTTATTGGAGAAGATAAGTCAAACAACGAGAGAGCAATACGA
TCGTGGCTGCGACTTAACCCTACGCCGAGGGTGACATTGCTGGGATACGA
AACTGGATATGAGGAAGCTGCGGAGGAGTTTGGATTGCACATTGAACGGC
GGGTTGACAAGAACTTTCTTGGAGTACCACTGTTCAACTCCATGTTTCAT
CGGGCTAATGATTCGAAGGCAATGGTTACAGTTATCATCAATGGTGATAT
TCTGCTGTTTGATGACTTTGTTCAAACATTGAAGAAAGTTATCTCCAACT
TCGAGCACTTTCTCGTGGTTGCAGCTCGTTACGATGTGGACAAGTTGCCG
GATAATTTAGAAGATACAGACCCAGATTATGTGCGCAAAATCCGTCAGCA
TGTTCTGTCAACTGGTACTCTGCATACTTATGGTGGAATGGATGTCTGGG
CTTGGAACGCACAAGGGCCTAGACTGTTCGATCCGGTAATGCCGCATTTC
ATCTTTGGTCGAGGAAAGTACGACAACTGGCTCACTCATGAAACGATCGC
AGCTGGAAGAAGGCAAGTCGTTGACGCCTCGGAGACTTGTTTGACTGTTC
ATGTTCGCCATGATTACCATCTCGTGACCGGGGGCGGCGGCGGCGATGCC
AAAGGTGCGGGAAAGAGACGATTATTGGGCGCATTTTGGTCCGAAGGTAA
AAAGTCCAAGTTCGAACTCTTCATCAATATCTACCTCAGCCTGCATGTCG
GGTCGTATACCAATCAGATGGGAAACGTTCTGTTTGCGCCATGGAAGCTT
TCGTTGTGTATGGAGCCGATGGGAATGTGCCTTCTAAAACGAAAGAGACC
TGGTATATGCAACTGTGAATTCTCAAGTTTTGTTAGCAATACGCAAACCG
ATCCTGTTGTTAAAAACGGGTCAAGGGTTATTCGATGTGGGATGATCTCG
GTAGAGACAAAAGAAAACTTCGTTATACCAGTTACTGTTCCCGAAGGATC
AACAGAGGCTCCAGCTTTTGGTCTCCCGCTCACAATGAAGTCTGTGATTG
AAAAAATTGTTATCAACAACACTATCATACTATCAGCACTCAACTACGGT
TATCGCGGGATCATGATGAATTGGGTTTGCAATATGAGACACTTGGGGAT
AACAAATTTTGTTATTGCCGCATTAGATCCAGATTTGTACAAGTTCGCAT
ATACTCGCGGCTTGCCGACATATCTCGAGAACACAATCTTTCAAGGATTG
AACTCTTCTATTATCAGCGACGCCTCATATGGGTCTGATTCTTTCAAGCA
GTTGACGAAGATGAAATCGCGTGTCGTGGTTCGCATCTTAAAGGAGGGGT
ATAATGTCGTGTGGACAGACAGTGATATTATCTACTTTCGGAATCCATTG
CAAGATATGTGGGCGTATAACGCTGATCTCTCAATCCAGACGAATGCCCC
TGACAACGAACCAATGAATGGCAGACGAAGATTAAATTCTGGCCTTTATC
TCGCGAGAAGCAATCCGGCCACCATAAAGGCGTTCGAAGACATTATTGTC
TTCGCGTCTAAATCACGAATGTCTGAACAACCCTGCTTCTATGATGTCAT
GTGCGGCAAAGAGGGCCAAAATGCCGAAGGAGATGATACGTGCAAATACA
ACGGAATGGTTGTCAAACTCCTTAACCGTCATCTCTATCCCAATGGTATT
ACCGATGGAATATGGGATACTACTCCGAAGAAAATCCCAGAAAAGTTCCC
TCACCTTTACATTCTTCACAACAATTGGGTGAAAGGTGCCGATGGCAAAA
GAGACCGATTTGAGCGCCACAACTTTATTCTGTACGACAGAGAATCAGAA
TTGTGCGTATATCCAGAAACATGGTAG

Coding sequence (CDS) from alignment at tig00000887_pilon:58051..60177+

>Ggra9906.t1 ID=Ggra9906.t1|Name=Ggra9906.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2127bp|location=Sequence derived from alignment at tig00000887_pilon:58051..60177+ (Gracilaria gracilis GNS1m male)
ATGCGAAGGGACCGCGATCGCGAGTATAGGAGAAGCAACAAAAGCTCATC
GAAACAAAACAACAACATTTCATCATGGCTCTTCTTCTGGTCGGCAATCC
TTCTCTTGATAAGCTTTGTGCAACTTCGCAATCCCCAATCACATTCGTTT
TATCGGGGGACTCTTAGACTACCTGAGCACGCAGAGGGCGAAAAGGTTGG
TGATTTTAGTGATAGGGTGGATGATCTGTCGATAGAGATCTTTTCCGCAC
CCAAGCCCTTTATTGGAGAAGATAAGTCAAACAACGAGAGAGCAATACGA
TCGTGGCTGCGACTTAACCCTACGCCGAGGGTGACATTGCTGGGATACGA
AACTGGATATGAGGAAGCTGCGGAGGAGTTTGGATTGCACATTGAACGGC
GGGTTGACAAGAACTTTCTTGGAGTACCACTGTTCAACTCCATGTTTCAT
CGGGCTAATGATTCGAAGGCAATGGTTACAGTTATCATCAATGGTGATAT
TCTGCTGTTTGATGACTTTGTTCAAACATTGAAGAAAGTTATCTCCAACT
TCGAGCACTTTCTCGTGGTTGCAGCTCGTTACGATGTGGACAAGTTGCCG
GATAATTTAGAAGATACAGACCCAGATTATGTGCGCAAAATCCGTCAGCA
TGTTCTGTCAACTGGTACTCTGCATACTTATGGTGGAATGGATGTCTGGG
CTTGGAACGCACAAGGGCCTAGACTGTTCGATCCGGTAATGCCGCATTTC
ATCTTTGGTCGAGGAAAGTACGACAACTGGCTCACTCATGAAACGATCGC
AGCTGGAAGAAGGCAAGTCGTTGACGCCTCGGAGACTTGTTTGACTGTTC
ATGTTCGCCATGATTACCATCTCGTGACCGGGGGCGGCGGCGGCGATGCC
AAAGGTGCGGGAAAGAGACGATTATTGGGCGCATTTTGGTCCGAAGGTAA
AAAGTCCAAGTTCGAACTCTTCATCAATATCTACCTCAGCCTGCATGTCG
GGTCGTATACCAATCAGATGGGAAACGTTCTGTTTGCGCCATGGAAGCTT
TCGTTGTGTATGGAGCCGATGGGAATGTGCCTTCTAAAACGAAAGAGACC
TGGTATATGCAACTGTGAATTCTCAAGTTTTGTTAGCAATACGCAAACCG
ATCCTGTTGTTAAAAACGGGTCAAGGGTTATTCGATGTGGGATGATCTCG
GTAGAGACAAAAGAAAACTTCGTTATACCAGTTACTGTTCCCGAAGGATC
AACAGAGGCTCCAGCTTTTGGTCTCCCGCTCACAATGAAGTCTGTGATTG
AAAAAATTGTTATCAACAACACTATCATACTATCAGCACTCAACTACGGT
TATCGCGGGATCATGATGAATTGGGTTTGCAATATGAGACACTTGGGGAT
AACAAATTTTGTTATTGCCGCATTAGATCCAGATTTGTACAAGTTCGCAT
ATACTCGCGGCTTGCCGACATATCTCGAGAACACAATCTTTCAAGGATTG
AACTCTTCTATTATCAGCGACGCCTCATATGGGTCTGATTCTTTCAAGCA
GTTGACGAAGATGAAATCGCGTGTCGTGGTTCGCATCTTAAAGGAGGGGT
ATAATGTCGTGTGGACAGACAGTGATATTATCTACTTTCGGAATCCATTG
CAAGATATGTGGGCGTATAACGCTGATCTCTCAATCCAGACGAATGCCCC
TGACAACGAACCAATGAATGGCAGACGAAGATTAAATTCTGGCCTTTATC
TCGCGAGAAGCAATCCGGCCACCATAAAGGCGTTCGAAGACATTATTGTC
TTCGCGTCTAAATCACGAATGTCTGAACAACCCTGCTTCTATGATGTCAT
GTGCGGCAAAGAGGGCCAAAATGCCGAAGGAGATGATACGTGCAAATACA
ACGGAATGGTTGTCAAACTCCTTAACCGTCATCTCTATCCCAATGGTATT
ACCGATGGAATATGGGATACTACTCCGAAGAAAATCCCAGAAAAGTTCCC
TCACCTTTACATTCTTCACAACAATTGGGTGAAAGGTGCCGATGGCAAAA
GAGACCGATTTGAGCGCCACAACTTTATTCTGTACGACAGAGAATCAGAA
TTGTGCGTATATCCAGAAACATGGTAG