Ggra9905.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9905.t1
Unique NameGgra9905.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length122
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000887_piloncontigtig00000887_pilon:56786..57276 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9905Ggra9905Gracilaria gracilis GNS1m malegenetig00000887_pilon 56786..57276 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9905.t1Ggra9905.t1Gracilaria gracilis GNS1m malepolypeptidetig00000887_pilon 56786..57276 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9905.t1.start1Ggra9905.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000887_pilon 56786..56788 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9905.t1.CDS1Ggra9905.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000887_pilon 56786..57016 +
Ggra9905.t1.CDS2Ggra9905.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000887_pilon 57142..57276 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9905.t1.exon1Ggra9905.t1.exon1Gracilaria gracilis GNS1m maleexontig00000887_pilon 56786..57016 +
Ggra9905.t1.exon2Ggra9905.t1.exon2Gracilaria gracilis GNS1m maleexontig00000887_pilon 57142..57276 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9905.t1.intron1Ggra9905.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000887_pilon 57017..57141 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9905.t1.stop1Ggra9905.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000887_pilon 57274..57276 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9905.t1 ID=Ggra9905.t1|Name=Ggra9905.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=122bp
MASRVDQIALHVRKLAQATGVKPNNHNTAKEPSLDGVTSDLDIEALAKSL
LDVSKDLDLYLQTLLDPPDLPISNLKSDIAKLQQEMKEKDELLEKSLELV
RKSESTFRQLKTRLTGSIYNM*
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spliced messenger RNA

>Ggra9905.t1 ID=Ggra9905.t1|Name=Ggra9905.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=366bp|location=Sequence derived from alignment at tig00000887_pilon:56786..57276+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCAGCAGAGTTGACCAGATAGCGCTTCACGTCCGAAAACTAGCACA
GGCCACCGGCGTCAAGCCCAACAACCACAACACCGCCAAGGAGCCCTCGT
TGGATGGCGTCACGTCCGACCTCGATATCGAGGCCCTGGCGAAGAGCCTT
CTCGACGTCTCCAAGGATCTCGATCTCTACCTACAGACCTTGTTAGATCC
CCCCGACCTCCCCATTTCCAATCTCAAATCCGATATCGCAAAGTTGCAAC
AAGAGATGAAAGAGAAGGATGAGCTGTTGGAAAAGTCCTTGGAGCTTGTG
CGCAAGTCCGAGTCCACCTTTCGACAGCTAAAGACCCGACTCACCGGAAG
CATCTACAACATGTAA
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protein sequence of Ggra9905.t1

>Ggra9905.t1 ID=Ggra9905.t1|Name=Ggra9905.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=122bp
MASRVDQIALHVRKLAQATGVKPNNHNTAKEPSLDGVTSDLDIEALAKSL
LDVSKDLDLYLQTLLDPPDLPISNLKSDIAKLQQEMKEKDELLEKSLELV
RKSESTFRQLKTRLTGSIYNM*
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mRNA from alignment at tig00000887_pilon:56786..57276+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9905.t1 ID=Ggra9905.t1|Name=Ggra9905.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=491bp|location=Sequence derived from alignment at tig00000887_pilon:56786..57276+ (Gracilaria gracilis GNS1m male)
ATGGCCAGCAGAGTTGACCAGATAGCGCTTCACGTCCGAAAACTAGCACA
GGCCACCGGCGTCAAGCCCAACAACCACAACACCGCCAAGGAGCCCTCGT
TGGATGGCGTCACGTCCGACCTCGATATCGAGGCCCTGGCGAAGAGCCTT
CTCGACGTCTCCAAGGATCTCGATCTCTACCTACAGACCTTGTTAGATCC
CCCCGACCTCCCCATTTCCAATCTCAAATCCGTGCGTTCTTGTTTTCACT
ACCTTTCGCCCCTTGTCCATCACACGCTCGTCGTCGCTGTCTCCCAACCT
CCCCGTGTGCTAACCGCTCCGTTCTTGCTCTTTTGAAATCATGTGTGCGC
GCGTAGGATATCGCAAAGTTGCAACAAGAGATGAAAGAGAAGGATGAGCT
GTTGGAAAAGTCCTTGGAGCTTGTGCGCAAGTCCGAGTCCACCTTTCGAC
AGCTAAAGACCCGACTCACCGGAAGCATCTACAACATGTAA
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Coding sequence (CDS) from alignment at tig00000887_pilon:56786..57276+

>Ggra9905.t1 ID=Ggra9905.t1|Name=Ggra9905.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=366bp|location=Sequence derived from alignment at tig00000887_pilon:56786..57276+ (Gracilaria gracilis GNS1m male)
ATGGCCAGCAGAGTTGACCAGATAGCGCTTCACGTCCGAAAACTAGCACA
GGCCACCGGCGTCAAGCCCAACAACCACAACACCGCCAAGGAGCCCTCGT
TGGATGGCGTCACGTCCGACCTCGATATCGAGGCCCTGGCGAAGAGCCTT
CTCGACGTCTCCAAGGATCTCGATCTCTACCTACAGACCTTGTTAGATCC
CCCCGACCTCCCCATTTCCAATCTCAAATCCGATATCGCAAAGTTGCAAC
AAGAGATGAAAGAGAAGGATGAGCTGTTGGAAAAGTCCTTGGAGCTTGTG
CGCAAGTCCGAGTCCACCTTTCGACAGCTAAAGACCCGACTCACCGGAAG
CATCTACAACATGTAA
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