Ggra9903.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9903.t1
Unique NameGgra9903.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length644
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000887_piloncontigtig00000887_pilon:50518..52449 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9903Ggra9903Gracilaria gracilis GNS1m malegenetig00000887_pilon 50518..52449 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9903.t1.stop1Ggra9903.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000887_pilon 50518..50520 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9903.t1.CDS1Ggra9903.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000887_pilon 50518..52449 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9903.t1.exon1Ggra9903.t1.exon1Gracilaria gracilis GNS1m maleexontig00000887_pilon 50518..52449 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9903.t1.start1Ggra9903.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000887_pilon 52447..52449 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9903.t1Ggra9903.t1Gracilaria gracilis GNS1m malepolypeptidetig00000887_pilon 50518..52449 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9903.t1 ID=Ggra9903.t1|Name=Ggra9903.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=644bp
MMRFAFRARQRKDAVPPAPPDRHAEPPRKKTFAPRLAALNSFSKLGASAN
HSFVSIKPKPSATTPNTNVNNASAQNVIPNARQSSSPLSVLVNYDLHPTR
NHSGHALEYANYTPSRFFVAPTTRTHRRPRHATNASFFSSALALDYDTMA
RRAAPFQPDFLPLHKRIQARIVRLRQLLMEGDRIGDLQMLKDLAEILQAN
IARHQTQAESKRSQIKHAQIVAGFVDRRNHVIHIKKVSGKPSTFRSRTTS
ALKLRAASMRSSSRHPRNGAENKQRIRPEMNQRRCDDLGAQKGKSDFSRL
TRKSSAHLRRLHSAGAVLMRKLSKSPAPTHHAACSPDSAPSSTPVLDPET
IKKLKTDPAPIINDFQMELQAIEQEGLLDRAKLDEVESQLDQRRRIHEEA
MDILDQFYGALPGWENDPISQKMILETVELTEAGVDAERDLTESRDVFLR
AEAALADHQRAHRALQAIRSDLTSFVQILSDLIASADVIVETRGRANTPT
RQRRYSLDVQTEAGEGVLDTFSHLERLLDRCIGQSRLAVECCCEAPRVQN
LQDDMEQISAGFALEADAVKKNGTIYHDDLEPTLQVSVTALGDCKLAEGF
VSERQDLISEDLKPLRNQLERSEEYVMLERLAILDLRHPRDDR*
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spliced messenger RNA

>Ggra9903.t1 ID=Ggra9903.t1|Name=Ggra9903.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1932bp|location=Sequence derived from alignment at tig00000887_pilon:50518..52449- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGCGATTCGCGTTTCGCGCTCGCCAGCGCAAGGACGCTGTGCCGCC
CGCACCGCCCGACCGCCACGCAGAGCCACCCAGGAAGAAGACCTTTGCCC
CACGTCTCGCCGCCCTCAACTCCTTTTCCAAGCTGGGCGCTTCCGCCAAT
CATTCCTTCGTCTCCATCAAGCCCAAGCCCTCAGCCACCACCCCCAACAC
CAACGTCAACAACGCCTCGGCTCAAAATGTCATCCCCAACGCTCGCCAGT
CCTCGTCCCCGCTGTCTGTCCTCGTCAACTACGACCTGCATCCCACTCGA
AACCACTCTGGTCACGCTCTAGAGTACGCCAACTACACTCCGTCCCGGTT
CTTTGTTGCTCCAACCACCCGCACTCATCGCCGACCCCGTCATGCTACCA
ACGCCTCGTTTTTCTCCTCTGCACTGGCGCTGGACTACGACACCATGGCG
CGCAGAGCTGCCCCTTTTCAGCCTGATTTTCTTCCGCTACACAAGCGCAT
TCAGGCCAGAATCGTGCGCTTGCGCCAGCTGCTCATGGAGGGCGATCGTA
TCGGAGACTTGCAGATGCTCAAGGATCTCGCCGAAATTCTGCAAGCCAAT
ATTGCCAGGCACCAAACGCAGGCCGAGTCCAAGCGCTCGCAGATAAAGCA
TGCGCAGATTGTTGCCGGCTTTGTCGACAGGAGAAACCATGTCATTCACA
TCAAGAAGGTGTCTGGCAAGCCCAGTACCTTTCGAAGCAGAACCACCAGT
GCTCTCAAGCTGCGCGCTGCCTCGATGCGCTCATCCTCTCGACATCCCCG
CAATGGCGCTGAGAACAAGCAACGCATCAGGCCTGAAATGAACCAAAGGC
GCTGTGATGACCTTGGCGCTCAGAAGGGCAAGTCTGACTTTAGTCGCCTC
ACGCGCAAAAGTTCGGCGCATTTGCGACGCTTGCATAGCGCTGGTGCCGT
GCTGATGAGGAAGCTCAGCAAGTCTCCTGCGCCCACCCATCATGCCGCTT
GCTCTCCGGACAGTGCGCCGTCGAGTACACCAGTGTTGGATCCCGAGACT
ATCAAAAAGCTCAAGACCGATCCTGCTCCAATTATAAATGACTTTCAAAT
GGAGTTGCAGGCGATTGAACAGGAAGGGCTATTGGACCGCGCCAAGCTGG
ACGAGGTCGAGTCTCAACTTGACCAACGTCGGCGAATACACGAGGAAGCC
ATGGATATTCTTGATCAATTTTACGGCGCTTTACCAGGCTGGGAGAACGA
CCCCATCTCACAAAAGATGATTTTGGAAACAGTGGAACTGACTGAAGCTG
GCGTGGATGCAGAACGTGATCTGACCGAGTCACGCGACGTGTTCCTTCGT
GCCGAAGCTGCGCTTGCTGATCATCAGCGTGCTCACCGAGCGTTGCAGGC
CATTCGCTCCGACCTTACCAGCTTCGTGCAGATTCTGAGTGACCTCATTG
CTTCCGCCGATGTGATTGTCGAGACGCGCGGTAGGGCGAACACCCCTACC
AGACAGCGACGATACTCGCTTGATGTGCAAACCGAAGCAGGTGAGGGTGT
TTTGGACACTTTTTCTCATCTTGAACGACTTCTTGATCGTTGTATTGGAC
AGTCTCGACTAGCTGTCGAGTGCTGCTGTGAGGCACCGCGTGTACAGAAT
CTACAGGACGATATGGAACAGATTTCTGCTGGATTTGCTCTTGAGGCGGA
CGCCGTTAAGAAGAATGGTACGATTTATCATGATGACCTTGAACCTACGC
TTCAGGTCTCGGTGACTGCGTTGGGGGATTGCAAATTGGCGGAAGGATTC
GTGTCCGAAAGACAAGACCTGATTTCTGAAGATCTAAAGCCGCTAAGGAA
TCAGCTGGAGCGAAGTGAGGAGTACGTGATGTTGGAACGCCTGGCAATTC
TGGATTTGCGGCACCCCCGAGATGATCGATGA
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protein sequence of Ggra9903.t1

>Ggra9903.t1 ID=Ggra9903.t1|Name=Ggra9903.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=644bp
MMRFAFRARQRKDAVPPAPPDRHAEPPRKKTFAPRLAALNSFSKLGASAN
HSFVSIKPKPSATTPNTNVNNASAQNVIPNARQSSSPLSVLVNYDLHPTR
NHSGHALEYANYTPSRFFVAPTTRTHRRPRHATNASFFSSALALDYDTMA
RRAAPFQPDFLPLHKRIQARIVRLRQLLMEGDRIGDLQMLKDLAEILQAN
IARHQTQAESKRSQIKHAQIVAGFVDRRNHVIHIKKVSGKPSTFRSRTTS
ALKLRAASMRSSSRHPRNGAENKQRIRPEMNQRRCDDLGAQKGKSDFSRL
TRKSSAHLRRLHSAGAVLMRKLSKSPAPTHHAACSPDSAPSSTPVLDPET
IKKLKTDPAPIINDFQMELQAIEQEGLLDRAKLDEVESQLDQRRRIHEEA
MDILDQFYGALPGWENDPISQKMILETVELTEAGVDAERDLTESRDVFLR
AEAALADHQRAHRALQAIRSDLTSFVQILSDLIASADVIVETRGRANTPT
RQRRYSLDVQTEAGEGVLDTFSHLERLLDRCIGQSRLAVECCCEAPRVQN
LQDDMEQISAGFALEADAVKKNGTIYHDDLEPTLQVSVTALGDCKLAEGF
VSERQDLISEDLKPLRNQLERSEEYVMLERLAILDLRHPRDDR*
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mRNA from alignment at tig00000887_pilon:50518..52449-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9903.t1 ID=Ggra9903.t1|Name=Ggra9903.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1932bp|location=Sequence derived from alignment at tig00000887_pilon:50518..52449- (Gracilaria gracilis GNS1m male)
ATGATGCGATTCGCGTTTCGCGCTCGCCAGCGCAAGGACGCTGTGCCGCC
CGCACCGCCCGACCGCCACGCAGAGCCACCCAGGAAGAAGACCTTTGCCC
CACGTCTCGCCGCCCTCAACTCCTTTTCCAAGCTGGGCGCTTCCGCCAAT
CATTCCTTCGTCTCCATCAAGCCCAAGCCCTCAGCCACCACCCCCAACAC
CAACGTCAACAACGCCTCGGCTCAAAATGTCATCCCCAACGCTCGCCAGT
CCTCGTCCCCGCTGTCTGTCCTCGTCAACTACGACCTGCATCCCACTCGA
AACCACTCTGGTCACGCTCTAGAGTACGCCAACTACACTCCGTCCCGGTT
CTTTGTTGCTCCAACCACCCGCACTCATCGCCGACCCCGTCATGCTACCA
ACGCCTCGTTTTTCTCCTCTGCACTGGCGCTGGACTACGACACCATGGCG
CGCAGAGCTGCCCCTTTTCAGCCTGATTTTCTTCCGCTACACAAGCGCAT
TCAGGCCAGAATCGTGCGCTTGCGCCAGCTGCTCATGGAGGGCGATCGTA
TCGGAGACTTGCAGATGCTCAAGGATCTCGCCGAAATTCTGCAAGCCAAT
ATTGCCAGGCACCAAACGCAGGCCGAGTCCAAGCGCTCGCAGATAAAGCA
TGCGCAGATTGTTGCCGGCTTTGTCGACAGGAGAAACCATGTCATTCACA
TCAAGAAGGTGTCTGGCAAGCCCAGTACCTTTCGAAGCAGAACCACCAGT
GCTCTCAAGCTGCGCGCTGCCTCGATGCGCTCATCCTCTCGACATCCCCG
CAATGGCGCTGAGAACAAGCAACGCATCAGGCCTGAAATGAACCAAAGGC
GCTGTGATGACCTTGGCGCTCAGAAGGGCAAGTCTGACTTTAGTCGCCTC
ACGCGCAAAAGTTCGGCGCATTTGCGACGCTTGCATAGCGCTGGTGCCGT
GCTGATGAGGAAGCTCAGCAAGTCTCCTGCGCCCACCCATCATGCCGCTT
GCTCTCCGGACAGTGCGCCGTCGAGTACACCAGTGTTGGATCCCGAGACT
ATCAAAAAGCTCAAGACCGATCCTGCTCCAATTATAAATGACTTTCAAAT
GGAGTTGCAGGCGATTGAACAGGAAGGGCTATTGGACCGCGCCAAGCTGG
ACGAGGTCGAGTCTCAACTTGACCAACGTCGGCGAATACACGAGGAAGCC
ATGGATATTCTTGATCAATTTTACGGCGCTTTACCAGGCTGGGAGAACGA
CCCCATCTCACAAAAGATGATTTTGGAAACAGTGGAACTGACTGAAGCTG
GCGTGGATGCAGAACGTGATCTGACCGAGTCACGCGACGTGTTCCTTCGT
GCCGAAGCTGCGCTTGCTGATCATCAGCGTGCTCACCGAGCGTTGCAGGC
CATTCGCTCCGACCTTACCAGCTTCGTGCAGATTCTGAGTGACCTCATTG
CTTCCGCCGATGTGATTGTCGAGACGCGCGGTAGGGCGAACACCCCTACC
AGACAGCGACGATACTCGCTTGATGTGCAAACCGAAGCAGGTGAGGGTGT
TTTGGACACTTTTTCTCATCTTGAACGACTTCTTGATCGTTGTATTGGAC
AGTCTCGACTAGCTGTCGAGTGCTGCTGTGAGGCACCGCGTGTACAGAAT
CTACAGGACGATATGGAACAGATTTCTGCTGGATTTGCTCTTGAGGCGGA
CGCCGTTAAGAAGAATGGTACGATTTATCATGATGACCTTGAACCTACGC
TTCAGGTCTCGGTGACTGCGTTGGGGGATTGCAAATTGGCGGAAGGATTC
GTGTCCGAAAGACAAGACCTGATTTCTGAAGATCTAAAGCCGCTAAGGAA
TCAGCTGGAGCGAAGTGAGGAGTACGTGATGTTGGAACGCCTGGCAATTC
TGGATTTGCGGCACCCCCGAGATGATCGATGA
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Coding sequence (CDS) from alignment at tig00000887_pilon:50518..52449-

>Ggra9903.t1 ID=Ggra9903.t1|Name=Ggra9903.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1932bp|location=Sequence derived from alignment at tig00000887_pilon:50518..52449- (Gracilaria gracilis GNS1m male)
ATGATGCGATTCGCGTTTCGCGCTCGCCAGCGCAAGGACGCTGTGCCGCC
CGCACCGCCCGACCGCCACGCAGAGCCACCCAGGAAGAAGACCTTTGCCC
CACGTCTCGCCGCCCTCAACTCCTTTTCCAAGCTGGGCGCTTCCGCCAAT
CATTCCTTCGTCTCCATCAAGCCCAAGCCCTCAGCCACCACCCCCAACAC
CAACGTCAACAACGCCTCGGCTCAAAATGTCATCCCCAACGCTCGCCAGT
CCTCGTCCCCGCTGTCTGTCCTCGTCAACTACGACCTGCATCCCACTCGA
AACCACTCTGGTCACGCTCTAGAGTACGCCAACTACACTCCGTCCCGGTT
CTTTGTTGCTCCAACCACCCGCACTCATCGCCGACCCCGTCATGCTACCA
ACGCCTCGTTTTTCTCCTCTGCACTGGCGCTGGACTACGACACCATGGCG
CGCAGAGCTGCCCCTTTTCAGCCTGATTTTCTTCCGCTACACAAGCGCAT
TCAGGCCAGAATCGTGCGCTTGCGCCAGCTGCTCATGGAGGGCGATCGTA
TCGGAGACTTGCAGATGCTCAAGGATCTCGCCGAAATTCTGCAAGCCAAT
ATTGCCAGGCACCAAACGCAGGCCGAGTCCAAGCGCTCGCAGATAAAGCA
TGCGCAGATTGTTGCCGGCTTTGTCGACAGGAGAAACCATGTCATTCACA
TCAAGAAGGTGTCTGGCAAGCCCAGTACCTTTCGAAGCAGAACCACCAGT
GCTCTCAAGCTGCGCGCTGCCTCGATGCGCTCATCCTCTCGACATCCCCG
CAATGGCGCTGAGAACAAGCAACGCATCAGGCCTGAAATGAACCAAAGGC
GCTGTGATGACCTTGGCGCTCAGAAGGGCAAGTCTGACTTTAGTCGCCTC
ACGCGCAAAAGTTCGGCGCATTTGCGACGCTTGCATAGCGCTGGTGCCGT
GCTGATGAGGAAGCTCAGCAAGTCTCCTGCGCCCACCCATCATGCCGCTT
GCTCTCCGGACAGTGCGCCGTCGAGTACACCAGTGTTGGATCCCGAGACT
ATCAAAAAGCTCAAGACCGATCCTGCTCCAATTATAAATGACTTTCAAAT
GGAGTTGCAGGCGATTGAACAGGAAGGGCTATTGGACCGCGCCAAGCTGG
ACGAGGTCGAGTCTCAACTTGACCAACGTCGGCGAATACACGAGGAAGCC
ATGGATATTCTTGATCAATTTTACGGCGCTTTACCAGGCTGGGAGAACGA
CCCCATCTCACAAAAGATGATTTTGGAAACAGTGGAACTGACTGAAGCTG
GCGTGGATGCAGAACGTGATCTGACCGAGTCACGCGACGTGTTCCTTCGT
GCCGAAGCTGCGCTTGCTGATCATCAGCGTGCTCACCGAGCGTTGCAGGC
CATTCGCTCCGACCTTACCAGCTTCGTGCAGATTCTGAGTGACCTCATTG
CTTCCGCCGATGTGATTGTCGAGACGCGCGGTAGGGCGAACACCCCTACC
AGACAGCGACGATACTCGCTTGATGTGCAAACCGAAGCAGGTGAGGGTGT
TTTGGACACTTTTTCTCATCTTGAACGACTTCTTGATCGTTGTATTGGAC
AGTCTCGACTAGCTGTCGAGTGCTGCTGTGAGGCACCGCGTGTACAGAAT
CTACAGGACGATATGGAACAGATTTCTGCTGGATTTGCTCTTGAGGCGGA
CGCCGTTAAGAAGAATGGTACGATTTATCATGATGACCTTGAACCTACGC
TTCAGGTCTCGGTGACTGCGTTGGGGGATTGCAAATTGGCGGAAGGATTC
GTGTCCGAAAGACAAGACCTGATTTCTGAAGATCTAAAGCCGCTAAGGAA
TCAGCTGGAGCGAAGTGAGGAGTACGTGATGTTGGAACGCCTGGCAATTC
TGGATTTGCGGCACCCCCGAGATGATCGATGA
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