Ggra9903.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9903.t1
Unique Name	Ggra9903.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	644

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000887_pilon:50518..52449-
coding sequence from alignment at tig00000887_pilon:50518..52449-

mRNA sequence

>Ggra9903.t1 ID=Ggra9903.t1|Name=Ggra9903.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=644bp
MMRFAFRARQRKDAVPPAPPDRHAEPPRKKTFAPRLAALNSFSKLGASAN
HSFVSIKPKPSATTPNTNVNNASAQNVIPNARQSSSPLSVLVNYDLHPTR
NHSGHALEYANYTPSRFFVAPTTRTHRRPRHATNASFFSSALALDYDTMA
RRAAPFQPDFLPLHKRIQARIVRLRQLLMEGDRIGDLQMLKDLAEILQAN
IARHQTQAESKRSQIKHAQIVAGFVDRRNHVIHIKKVSGKPSTFRSRTTS
ALKLRAASMRSSSRHPRNGAENKQRIRPEMNQRRCDDLGAQKGKSDFSRL
TRKSSAHLRRLHSAGAVLMRKLSKSPAPTHHAACSPDSAPSSTPVLDPET
IKKLKTDPAPIINDFQMELQAIEQEGLLDRAKLDEVESQLDQRRRIHEEA
MDILDQFYGALPGWENDPISQKMILETVELTEAGVDAERDLTESRDVFLR
AEAALADHQRAHRALQAIRSDLTSFVQILSDLIASADVIVETRGRANTPT
RQRRYSLDVQTEAGEGVLDTFSHLERLLDRCIGQSRLAVECCCEAPRVQN
LQDDMEQISAGFALEADAVKKNGTIYHDDLEPTLQVSVTALGDCKLAEGF
VSERQDLISEDLKPLRNQLERSEEYVMLERLAILDLRHPRDDR*

spliced messenger RNA

>Ggra9903.t1 ID=Ggra9903.t1|Name=Ggra9903.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1932bp|location=Sequence derived from alignment at tig00000887_pilon:50518..52449- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGCGATTCGCGTTTCGCGCTCGCCAGCGCAAGGACGCTGTGCCGCC
CGCACCGCCCGACCGCCACGCAGAGCCACCCAGGAAGAAGACCTTTGCCC
CACGTCTCGCCGCCCTCAACTCCTTTTCCAAGCTGGGCGCTTCCGCCAAT
CATTCCTTCGTCTCCATCAAGCCCAAGCCCTCAGCCACCACCCCCAACAC
CAACGTCAACAACGCCTCGGCTCAAAATGTCATCCCCAACGCTCGCCAGT
CCTCGTCCCCGCTGTCTGTCCTCGTCAACTACGACCTGCATCCCACTCGA
AACCACTCTGGTCACGCTCTAGAGTACGCCAACTACACTCCGTCCCGGTT
CTTTGTTGCTCCAACCACCCGCACTCATCGCCGACCCCGTCATGCTACCA
ACGCCTCGTTTTTCTCCTCTGCACTGGCGCTGGACTACGACACCATGGCG
CGCAGAGCTGCCCCTTTTCAGCCTGATTTTCTTCCGCTACACAAGCGCAT
TCAGGCCAGAATCGTGCGCTTGCGCCAGCTGCTCATGGAGGGCGATCGTA
TCGGAGACTTGCAGATGCTCAAGGATCTCGCCGAAATTCTGCAAGCCAAT
ATTGCCAGGCACCAAACGCAGGCCGAGTCCAAGCGCTCGCAGATAAAGCA
TGCGCAGATTGTTGCCGGCTTTGTCGACAGGAGAAACCATGTCATTCACA
TCAAGAAGGTGTCTGGCAAGCCCAGTACCTTTCGAAGCAGAACCACCAGT
GCTCTCAAGCTGCGCGCTGCCTCGATGCGCTCATCCTCTCGACATCCCCG
CAATGGCGCTGAGAACAAGCAACGCATCAGGCCTGAAATGAACCAAAGGC
GCTGTGATGACCTTGGCGCTCAGAAGGGCAAGTCTGACTTTAGTCGCCTC
ACGCGCAAAAGTTCGGCGCATTTGCGACGCTTGCATAGCGCTGGTGCCGT
GCTGATGAGGAAGCTCAGCAAGTCTCCTGCGCCCACCCATCATGCCGCTT
GCTCTCCGGACAGTGCGCCGTCGAGTACACCAGTGTTGGATCCCGAGACT
ATCAAAAAGCTCAAGACCGATCCTGCTCCAATTATAAATGACTTTCAAAT
GGAGTTGCAGGCGATTGAACAGGAAGGGCTATTGGACCGCGCCAAGCTGG
ACGAGGTCGAGTCTCAACTTGACCAACGTCGGCGAATACACGAGGAAGCC
ATGGATATTCTTGATCAATTTTACGGCGCTTTACCAGGCTGGGAGAACGA
CCCCATCTCACAAAAGATGATTTTGGAAACAGTGGAACTGACTGAAGCTG
GCGTGGATGCAGAACGTGATCTGACCGAGTCACGCGACGTGTTCCTTCGT
GCCGAAGCTGCGCTTGCTGATCATCAGCGTGCTCACCGAGCGTTGCAGGC
CATTCGCTCCGACCTTACCAGCTTCGTGCAGATTCTGAGTGACCTCATTG
CTTCCGCCGATGTGATTGTCGAGACGCGCGGTAGGGCGAACACCCCTACC
AGACAGCGACGATACTCGCTTGATGTGCAAACCGAAGCAGGTGAGGGTGT
TTTGGACACTTTTTCTCATCTTGAACGACTTCTTGATCGTTGTATTGGAC
AGTCTCGACTAGCTGTCGAGTGCTGCTGTGAGGCACCGCGTGTACAGAAT
CTACAGGACGATATGGAACAGATTTCTGCTGGATTTGCTCTTGAGGCGGA
CGCCGTTAAGAAGAATGGTACGATTTATCATGATGACCTTGAACCTACGC
TTCAGGTCTCGGTGACTGCGTTGGGGGATTGCAAATTGGCGGAAGGATTC
GTGTCCGAAAGACAAGACCTGATTTCTGAAGATCTAAAGCCGCTAAGGAA
TCAGCTGGAGCGAAGTGAGGAGTACGTGATGTTGGAACGCCTGGCAATTC
TGGATTTGCGGCACCCCCGAGATGATCGATGA

protein sequence of Ggra9903.t1

>Ggra9903.t1 ID=Ggra9903.t1|Name=Ggra9903.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=644bp
MMRFAFRARQRKDAVPPAPPDRHAEPPRKKTFAPRLAALNSFSKLGASAN
HSFVSIKPKPSATTPNTNVNNASAQNVIPNARQSSSPLSVLVNYDLHPTR
NHSGHALEYANYTPSRFFVAPTTRTHRRPRHATNASFFSSALALDYDTMA
RRAAPFQPDFLPLHKRIQARIVRLRQLLMEGDRIGDLQMLKDLAEILQAN
IARHQTQAESKRSQIKHAQIVAGFVDRRNHVIHIKKVSGKPSTFRSRTTS
ALKLRAASMRSSSRHPRNGAENKQRIRPEMNQRRCDDLGAQKGKSDFSRL
TRKSSAHLRRLHSAGAVLMRKLSKSPAPTHHAACSPDSAPSSTPVLDPET
IKKLKTDPAPIINDFQMELQAIEQEGLLDRAKLDEVESQLDQRRRIHEEA
MDILDQFYGALPGWENDPISQKMILETVELTEAGVDAERDLTESRDVFLR
AEAALADHQRAHRALQAIRSDLTSFVQILSDLIASADVIVETRGRANTPT
RQRRYSLDVQTEAGEGVLDTFSHLERLLDRCIGQSRLAVECCCEAPRVQN
LQDDMEQISAGFALEADAVKKNGTIYHDDLEPTLQVSVTALGDCKLAEGF
VSERQDLISEDLKPLRNQLERSEEYVMLERLAILDLRHPRDDR*

mRNA from alignment at tig00000887_pilon:50518..52449-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9903.t1 ID=Ggra9903.t1|Name=Ggra9903.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1932bp|location=Sequence derived from alignment at tig00000887_pilon:50518..52449- (Gracilaria gracilis GNS1m male)
ATGATGCGATTCGCGTTTCGCGCTCGCCAGCGCAAGGACGCTGTGCCGCC
CGCACCGCCCGACCGCCACGCAGAGCCACCCAGGAAGAAGACCTTTGCCC
CACGTCTCGCCGCCCTCAACTCCTTTTCCAAGCTGGGCGCTTCCGCCAAT
CATTCCTTCGTCTCCATCAAGCCCAAGCCCTCAGCCACCACCCCCAACAC
CAACGTCAACAACGCCTCGGCTCAAAATGTCATCCCCAACGCTCGCCAGT
CCTCGTCCCCGCTGTCTGTCCTCGTCAACTACGACCTGCATCCCACTCGA
AACCACTCTGGTCACGCTCTAGAGTACGCCAACTACACTCCGTCCCGGTT
CTTTGTTGCTCCAACCACCCGCACTCATCGCCGACCCCGTCATGCTACCA
ACGCCTCGTTTTTCTCCTCTGCACTGGCGCTGGACTACGACACCATGGCG
CGCAGAGCTGCCCCTTTTCAGCCTGATTTTCTTCCGCTACACAAGCGCAT
TCAGGCCAGAATCGTGCGCTTGCGCCAGCTGCTCATGGAGGGCGATCGTA
TCGGAGACTTGCAGATGCTCAAGGATCTCGCCGAAATTCTGCAAGCCAAT
ATTGCCAGGCACCAAACGCAGGCCGAGTCCAAGCGCTCGCAGATAAAGCA
TGCGCAGATTGTTGCCGGCTTTGTCGACAGGAGAAACCATGTCATTCACA
TCAAGAAGGTGTCTGGCAAGCCCAGTACCTTTCGAAGCAGAACCACCAGT
GCTCTCAAGCTGCGCGCTGCCTCGATGCGCTCATCCTCTCGACATCCCCG
CAATGGCGCTGAGAACAAGCAACGCATCAGGCCTGAAATGAACCAAAGGC
GCTGTGATGACCTTGGCGCTCAGAAGGGCAAGTCTGACTTTAGTCGCCTC
ACGCGCAAAAGTTCGGCGCATTTGCGACGCTTGCATAGCGCTGGTGCCGT
GCTGATGAGGAAGCTCAGCAAGTCTCCTGCGCCCACCCATCATGCCGCTT
GCTCTCCGGACAGTGCGCCGTCGAGTACACCAGTGTTGGATCCCGAGACT
ATCAAAAAGCTCAAGACCGATCCTGCTCCAATTATAAATGACTTTCAAAT
GGAGTTGCAGGCGATTGAACAGGAAGGGCTATTGGACCGCGCCAAGCTGG
ACGAGGTCGAGTCTCAACTTGACCAACGTCGGCGAATACACGAGGAAGCC
ATGGATATTCTTGATCAATTTTACGGCGCTTTACCAGGCTGGGAGAACGA
CCCCATCTCACAAAAGATGATTTTGGAAACAGTGGAACTGACTGAAGCTG
GCGTGGATGCAGAACGTGATCTGACCGAGTCACGCGACGTGTTCCTTCGT
GCCGAAGCTGCGCTTGCTGATCATCAGCGTGCTCACCGAGCGTTGCAGGC
CATTCGCTCCGACCTTACCAGCTTCGTGCAGATTCTGAGTGACCTCATTG
CTTCCGCCGATGTGATTGTCGAGACGCGCGGTAGGGCGAACACCCCTACC
AGACAGCGACGATACTCGCTTGATGTGCAAACCGAAGCAGGTGAGGGTGT
TTTGGACACTTTTTCTCATCTTGAACGACTTCTTGATCGTTGTATTGGAC
AGTCTCGACTAGCTGTCGAGTGCTGCTGTGAGGCACCGCGTGTACAGAAT
CTACAGGACGATATGGAACAGATTTCTGCTGGATTTGCTCTTGAGGCGGA
CGCCGTTAAGAAGAATGGTACGATTTATCATGATGACCTTGAACCTACGC
TTCAGGTCTCGGTGACTGCGTTGGGGGATTGCAAATTGGCGGAAGGATTC
GTGTCCGAAAGACAAGACCTGATTTCTGAAGATCTAAAGCCGCTAAGGAA
TCAGCTGGAGCGAAGTGAGGAGTACGTGATGTTGGAACGCCTGGCAATTC
TGGATTTGCGGCACCCCCGAGATGATCGATGA

Coding sequence (CDS) from alignment at tig00000887_pilon:50518..52449-

>Ggra9903.t1 ID=Ggra9903.t1|Name=Ggra9903.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1932bp|location=Sequence derived from alignment at tig00000887_pilon:50518..52449- (Gracilaria gracilis GNS1m male)
ATGATGCGATTCGCGTTTCGCGCTCGCCAGCGCAAGGACGCTGTGCCGCC
CGCACCGCCCGACCGCCACGCAGAGCCACCCAGGAAGAAGACCTTTGCCC
CACGTCTCGCCGCCCTCAACTCCTTTTCCAAGCTGGGCGCTTCCGCCAAT
CATTCCTTCGTCTCCATCAAGCCCAAGCCCTCAGCCACCACCCCCAACAC
CAACGTCAACAACGCCTCGGCTCAAAATGTCATCCCCAACGCTCGCCAGT
CCTCGTCCCCGCTGTCTGTCCTCGTCAACTACGACCTGCATCCCACTCGA
AACCACTCTGGTCACGCTCTAGAGTACGCCAACTACACTCCGTCCCGGTT
CTTTGTTGCTCCAACCACCCGCACTCATCGCCGACCCCGTCATGCTACCA
ACGCCTCGTTTTTCTCCTCTGCACTGGCGCTGGACTACGACACCATGGCG
CGCAGAGCTGCCCCTTTTCAGCCTGATTTTCTTCCGCTACACAAGCGCAT
TCAGGCCAGAATCGTGCGCTTGCGCCAGCTGCTCATGGAGGGCGATCGTA
TCGGAGACTTGCAGATGCTCAAGGATCTCGCCGAAATTCTGCAAGCCAAT
ATTGCCAGGCACCAAACGCAGGCCGAGTCCAAGCGCTCGCAGATAAAGCA
TGCGCAGATTGTTGCCGGCTTTGTCGACAGGAGAAACCATGTCATTCACA
TCAAGAAGGTGTCTGGCAAGCCCAGTACCTTTCGAAGCAGAACCACCAGT
GCTCTCAAGCTGCGCGCTGCCTCGATGCGCTCATCCTCTCGACATCCCCG
CAATGGCGCTGAGAACAAGCAACGCATCAGGCCTGAAATGAACCAAAGGC
GCTGTGATGACCTTGGCGCTCAGAAGGGCAAGTCTGACTTTAGTCGCCTC
ACGCGCAAAAGTTCGGCGCATTTGCGACGCTTGCATAGCGCTGGTGCCGT
GCTGATGAGGAAGCTCAGCAAGTCTCCTGCGCCCACCCATCATGCCGCTT
GCTCTCCGGACAGTGCGCCGTCGAGTACACCAGTGTTGGATCCCGAGACT
ATCAAAAAGCTCAAGACCGATCCTGCTCCAATTATAAATGACTTTCAAAT
GGAGTTGCAGGCGATTGAACAGGAAGGGCTATTGGACCGCGCCAAGCTGG
ACGAGGTCGAGTCTCAACTTGACCAACGTCGGCGAATACACGAGGAAGCC
ATGGATATTCTTGATCAATTTTACGGCGCTTTACCAGGCTGGGAGAACGA
CCCCATCTCACAAAAGATGATTTTGGAAACAGTGGAACTGACTGAAGCTG
GCGTGGATGCAGAACGTGATCTGACCGAGTCACGCGACGTGTTCCTTCGT
GCCGAAGCTGCGCTTGCTGATCATCAGCGTGCTCACCGAGCGTTGCAGGC
CATTCGCTCCGACCTTACCAGCTTCGTGCAGATTCTGAGTGACCTCATTG
CTTCCGCCGATGTGATTGTCGAGACGCGCGGTAGGGCGAACACCCCTACC
AGACAGCGACGATACTCGCTTGATGTGCAAACCGAAGCAGGTGAGGGTGT
TTTGGACACTTTTTCTCATCTTGAACGACTTCTTGATCGTTGTATTGGAC
AGTCTCGACTAGCTGTCGAGTGCTGCTGTGAGGCACCGCGTGTACAGAAT
CTACAGGACGATATGGAACAGATTTCTGCTGGATTTGCTCTTGAGGCGGA
CGCCGTTAAGAAGAATGGTACGATTTATCATGATGACCTTGAACCTACGC
TTCAGGTCTCGGTGACTGCGTTGGGGGATTGCAAATTGGCGGAAGGATTC
GTGTCCGAAAGACAAGACCTGATTTCTGAAGATCTAAAGCCGCTAAGGAA
TCAGCTGGAGCGAAGTGAGGAGTACGTGATGTTGGAACGCCTGGCAATTC
TGGATTTGCGGCACCCCCGAGATGATCGATGA