Ggra9902.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9902.t1
Unique NameGgra9902.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length147
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000887_piloncontigtig00000887_pilon:49785..50313 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4006.Lus10026805
PFAMsMoaE
Max annot lvl35493|Streptophyta
KEGG rclassRC02507
KEGG koko:K03635
KEGG ReactionR09395
KEGG Pathwayko00790,ko01100,ko04122,map00790,map01100,map04122
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009144,GO:0009150,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0016740,GO:0016782,GO:0016783,GO:0018130,GO:0019538,GO:0019637,GO:0019693,GO:0030366,GO:0032324,GO:0034641,GO:0042278,GO:0043170,GO:0043545,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046039,GO:0046128,GO:0046483,GO:0051186,GO:0051188,GO:0051189,GO:0055086,GO:0071704,GO:0072521,GO:0090407,GO:1901068,GO:1901135,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657
Evalue2.17e-49
EggNOG OGsCOG0314@1|root,KOG3307@2759|Eukaryota,37RDP@33090|Viridiplantae,3GD8E@35493|Streptophyta,4JI70@91835|fabids
EC2.8.1.12
DescriptionCatalytic subunit of the molybdopterin synthase complex, a complex that catalyzes the conversion of precursor Z into molybdopterin. Acts by mediating the incorporation of 2 sulfur atoms from thiocarboxylated MOCS2A into precursor Z to generate a dithiolene group
COG categoryH
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9902Ggra9902Gracilaria gracilis GNS1m malegenetig00000887_pilon 49785..50313 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9902.t1Ggra9902.t1Gracilaria gracilis GNS1m malepolypeptidetig00000887_pilon 49785..50313 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9902.t1.start1Ggra9902.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000887_pilon 49785..49787 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9902.t1.CDS1Ggra9902.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000887_pilon 49785..50115 +
Ggra9902.t1.CDS2Ggra9902.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000887_pilon 50204..50313 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9902.t1.exon1Ggra9902.t1.exon1Gracilaria gracilis GNS1m maleexontig00000887_pilon 49785..50115 +
Ggra9902.t1.exon2Ggra9902.t1.exon2Gracilaria gracilis GNS1m maleexontig00000887_pilon 50204..50313 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9902.t1.intron1Ggra9902.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000887_pilon 50116..50203 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9902.t1.stop1Ggra9902.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000887_pilon 50311..50313 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9902.t1 ID=Ggra9902.t1|Name=Ggra9902.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=147bp
MAEQQDTVLLTEEPLSVESAMSSVSRDCAGAVSLFVGTTRDNFDGKTVLR
LEYEAYNPMAIKEMKALCTTARATWAQITAIAVMHRLGVVPVREASVIIA
VSSPHRKDAIEACHSLIDELKARVPIWKKEIYENGSEWKENKEFKV*
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spliced messenger RNA

>Ggra9902.t1 ID=Ggra9902.t1|Name=Ggra9902.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=441bp|location=Sequence derived from alignment at tig00000887_pilon:49785..50313+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGAACAACAAGATACTGTGCTGCTCACCGAGGAGCCACTCAGCGT
GGAATCTGCCATGAGCTCAGTGTCTCGAGATTGTGCAGGCGCTGTTTCTT
TGTTTGTGGGTACCACCAGGGATAATTTTGATGGAAAGACCGTATTGCGC
TTGGAGTATGAAGCGTATAATCCCATGGCCATCAAGGAGATGAAAGCCTT
GTGTACTACAGCACGAGCTACGTGGGCGCAGATCACCGCCATCGCTGTCA
TGCATCGCTTGGGTGTAGTCCCAGTGCGCGAGGCCTCCGTCATCATTGCA
GTTTCATCTCCGCATCGAAAGGATGCAATTGAGGCTTGTCACTCGCTTAT
TGACGAGCTGAAAGCCCGTGTTCCGATATGGAAGAAAGAGATTTACGAGA
ACGGTTCAGAATGGAAAGAGAACAAGGAATTCAAAGTATAA
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protein sequence of Ggra9902.t1

>Ggra9902.t1 ID=Ggra9902.t1|Name=Ggra9902.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=147bp
MAEQQDTVLLTEEPLSVESAMSSVSRDCAGAVSLFVGTTRDNFDGKTVLR
LEYEAYNPMAIKEMKALCTTARATWAQITAIAVMHRLGVVPVREASVIIA
VSSPHRKDAIEACHSLIDELKARVPIWKKEIYENGSEWKENKEFKV*
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mRNA from alignment at tig00000887_pilon:49785..50313+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9902.t1 ID=Ggra9902.t1|Name=Ggra9902.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=529bp|location=Sequence derived from alignment at tig00000887_pilon:49785..50313+ (Gracilaria gracilis GNS1m male)
ATGGCTGAACAACAAGATACTGTGCTGCTCACCGAGGAGCCACTCAGCGT
GGAATCTGCCATGAGCTCAGTGTCTCGAGATTGTGCAGGCGCTGTTTCTT
TGTTTGTGGGTACCACCAGGGATAATTTTGATGGAAAGACCGTATTGCGC
TTGGAGTATGAAGCGTATAATCCCATGGCCATCAAGGAGATGAAAGCCTT
GTGTACTACAGCACGAGCTACGTGGGCGCAGATCACCGCCATCGCTGTCA
TGCATCGCTTGGGTGTAGTCCCAGTGCGCGAGGCCTCCGTCATCATTGCA
GTTTCATCTCCGCATCGAAAGGATGCAATTGGTACGTGCTTATTAGCCAA
TTAGCTTTATATCATCCCCCATCAAAAATGCTTACCAGAAGCAATGTTTC
GTTTTTGAATTACTTGCAGAGGCTTGTCACTCGCTTATTGACGAGCTGAA
AGCCCGTGTTCCGATATGGAAGAAAGAGATTTACGAGAACGGTTCAGAAT
GGAAAGAGAACAAGGAATTCAAAGTATAA
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Coding sequence (CDS) from alignment at tig00000887_pilon:49785..50313+

>Ggra9902.t1 ID=Ggra9902.t1|Name=Ggra9902.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=441bp|location=Sequence derived from alignment at tig00000887_pilon:49785..50313+ (Gracilaria gracilis GNS1m male)
ATGGCTGAACAACAAGATACTGTGCTGCTCACCGAGGAGCCACTCAGCGT
GGAATCTGCCATGAGCTCAGTGTCTCGAGATTGTGCAGGCGCTGTTTCTT
TGTTTGTGGGTACCACCAGGGATAATTTTGATGGAAAGACCGTATTGCGC
TTGGAGTATGAAGCGTATAATCCCATGGCCATCAAGGAGATGAAAGCCTT
GTGTACTACAGCACGAGCTACGTGGGCGCAGATCACCGCCATCGCTGTCA
TGCATCGCTTGGGTGTAGTCCCAGTGCGCGAGGCCTCCGTCATCATTGCA
GTTTCATCTCCGCATCGAAAGGATGCAATTGAGGCTTGTCACTCGCTTAT
TGACGAGCTGAAAGCCCGTGTTCCGATATGGAAGAAAGAGATTTACGAGA
ACGGTTCAGAATGGAAAGAGAACAAGGAATTCAAAGTATAA
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