Ggra9901.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9901.t1
Unique NameGgra9901.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length461
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000258_piloncontigtig00000258_pilon:27302..31830 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog880073.Calab_2574
Preferred nameppdK
PFAMsPEP-utilizers,PEP-utilizers_C,PPDK_N
Max annot lvl2|Bacteria
KEGG rclassRC00002,RC00015
KEGG koko:K01006
KEGG ReactionR00206
KEGG Pathwayko00620,ko00710,ko00720,ko01100,ko01120,ko01200,map00620,map00710,map00720,map01100,map01120,map01200
KEGG ModuleM00169,M00171,M00172,M00173
Evalue2.36e-15
EggNOG OGsCOG0574@1|root,COG1080@1|root,COG0574@2|Bacteria,COG1080@2|Bacteria,2NNNY@2323|unclassified Bacteria
EC2.7.9.1
DescriptionBelongs to the PEP-utilizing enzyme family
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9901Ggra9901Gracilaria gracilis GNS1m malegenetig00000258_pilon 27302..31830 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9901.t1Ggra9901.t1Gracilaria gracilis GNS1m malepolypeptidetig00000258_pilon 27302..31830 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9901.t1.stop1Ggra9901.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000258_pilon 27302..27304 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9901.t1.CDS1Ggra9901.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000258_pilon 27302..27675 -
Ggra9901.t1.CDS2Ggra9901.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000258_pilon 28379..28705 -
Ggra9901.t1.CDS3Ggra9901.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000258_pilon 31149..31830 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9901.t1.exon1Ggra9901.t1.exon1Gracilaria gracilis GNS1m maleexontig00000258_pilon 27302..27675 -
Ggra9901.t1.exon2Ggra9901.t1.exon2Gracilaria gracilis GNS1m maleexontig00000258_pilon 28379..28705 -
Ggra9901.t1.exon3Ggra9901.t1.exon3Gracilaria gracilis GNS1m maleexontig00000258_pilon 31149..31830 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9901.t1.intron1Ggra9901.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000258_pilon 27676..28378 -
Ggra9901.t1.intron2Ggra9901.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000258_pilon 28706..31148 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9901.t1.start1Ggra9901.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000258_pilon 31828..31830 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9901.t1 ID=Ggra9901.t1|Name=Ggra9901.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=461bp
MLDISPTEPAKKSKKSRVFSNEFRGRKLFACDAMGEAEKDGLLPMEQREG
YSSASRRRSDTSVGTIWGKSIARLERKKPDFFGSPEARFRIPSRARRGCA
VYKGIGATEHNCLGLRNVLDYLACNVHQISKKTRGELTTTVSQFPRWCIV
NSACRKLDAWKEKVFFQNIGDLALVGVFIHYFQHRCDRRTAKKKVGYLLV
VCDAAGSGSGARWKRDVHDVSVALRSLSTAFLAGAFEIGLDGKANSMNVS
GVVLKEGDLVKLDEGNGELVSGYAPNLEPKLPRRLLKFVIWTDARKKLLF
NADTLKDHRKVLGSVAEGVGLCRTGHMFFEAGTNHSVLLTIDTLSTFFFV
LNMTKRNIELTSSEMTPKERVKVDTEDAAWHPTEAPKERLKVDTGDAAWH
SAEAPKERVKVYTGDAPWHPTKAPKKRVKVDTGDAAWHSTVEDIEELCVA
FSMLTISADE*
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spliced messenger RNA

>Ggra9901.t1 ID=Ggra9901.t1|Name=Ggra9901.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1383bp|location=Sequence derived from alignment at tig00000258_pilon:27302..31830- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTGATATATCTCCAACGGAACCAGCGAAAAAGTCCAAGAAATCGAG
AGTTTTCTCAAATGAGTTTCGTGGAAGAAAGCTTTTTGCGTGTGATGCTA
TGGGAGAGGCTGAAAAAGATGGACTTCTGCCTATGGAACAAAGAGAGGGA
TACTCATCGGCTTCGCGCCGTAGATCTGATACGTCAGTGGGCACAATATG
GGGAAAGTCAATAGCTCGTCTAGAGAGGAAGAAACCTGACTTTTTTGGCA
GTCCGGAGGCCAGATTCAGAATCCCATCAAGAGCCCGACGGGGATGTGCT
GTTTACAAAGGAATAGGTGCAACAGAGCACAACTGTCTTGGTCTCCGAAA
CGTTTTGGATTACCTTGCGTGCAATGTTCATCAAATCTCAAAGAAGACAA
GGGGAGAACTCACCACTACGGTCTCCCAGTTTCCCCGCTGGTGCATCGTG
AATTCGGCATGTAGGAAACTGGACGCCTGGAAAGAAAAAGTATTTTTTCA
GAACATCGGTGACCTCGCTCTTGTCGGAGTATTTATCCACTACTTCCAGC
ACCGTTGTGATCGACGTACGGCGAAGAAGAAGGTCGGCTATCTGCTTGTA
GTTTGTGATGCAGCTGGTTCTGGTAGTGGTGCGCGATGGAAGAGGGATGT
CCATGATGTTTCCGTGGCGCTCCGAAGCCTTTCTACTGCATTCTTGGCGG
GCGCCTTTGAGATCGGTCTCGACGGTAAGGCAAACTCGATGAACGTTAGC
GGAGTGGTGCTAAAGGAAGGTGACCTGGTGAAGCTTGACGAAGGAAACGG
AGAACTGGTGTCCGGGTATGCGCCAAATCTTGAGCCAAAGCTGCCCAGGA
GACTTCTCAAGTTTGTAATTTGGACGGACGCGAGGAAGAAGCTACTTTTC
AATGCTGACACACTGAAAGACCATCGAAAGGTATTGGGGTCTGTCGCCGA
AGGGGTCGGACTTTGTCGCACAGGGCATATGTTCTTTGAAGCCGGTACGA
ATCATAGCGTTTTGCTGACGATCGACACTCTCTCCACTTTCTTTTTTGTT
CTGAACATGACGAAACGGAACATTGAATTGACCTCTTCCGAAATGACACC
GAAAGAGCGCGTGAAGGTTGACACAGAAGACGCAGCTTGGCATCCGACGG
AGGCACCGAAAGAGCGCTTGAAGGTTGATACAGGAGACGCAGCTTGGCAT
TCGGCGGAAGCACCGAAAGAGCGCGTGAAGGTTTACACAGGAGACGCACC
TTGGCATCCAACAAAGGCACCGAAAAAGCGCGTGAAGGTTGACACAGGAG
ACGCAGCTTGGCATTCGACGGTCGAAGATATCGAGGAGCTTTGCGTGGCG
TTTTCTATGCTAACGATTTCTGCGGATGAATGA
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protein sequence of Ggra9901.t1

>Ggra9901.t1 ID=Ggra9901.t1|Name=Ggra9901.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=461bp
MLDISPTEPAKKSKKSRVFSNEFRGRKLFACDAMGEAEKDGLLPMEQREG
YSSASRRRSDTSVGTIWGKSIARLERKKPDFFGSPEARFRIPSRARRGCA
VYKGIGATEHNCLGLRNVLDYLACNVHQISKKTRGELTTTVSQFPRWCIV
NSACRKLDAWKEKVFFQNIGDLALVGVFIHYFQHRCDRRTAKKKVGYLLV
VCDAAGSGSGARWKRDVHDVSVALRSLSTAFLAGAFEIGLDGKANSMNVS
GVVLKEGDLVKLDEGNGELVSGYAPNLEPKLPRRLLKFVIWTDARKKLLF
NADTLKDHRKVLGSVAEGVGLCRTGHMFFEAGTNHSVLLTIDTLSTFFFV
LNMTKRNIELTSSEMTPKERVKVDTEDAAWHPTEAPKERLKVDTGDAAWH
SAEAPKERVKVYTGDAPWHPTKAPKKRVKVDTGDAAWHSTVEDIEELCVA
FSMLTISADE*
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mRNA from alignment at tig00000258_pilon:27302..31830-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9901.t1 ID=Ggra9901.t1|Name=Ggra9901.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=4529bp|location=Sequence derived from alignment at tig00000258_pilon:27302..31830- (Gracilaria gracilis GNS1m male)
ATGCTTGATATATCTCCAACGGAACCAGCGAAAAAGTCCAAGAAATCGAG
AGTTTTCTCAAATGAGTTTCGTGGAAGAAAGCTTTTTGCGTGTGATGCTA
TGGGAGAGGCTGAAAAAGATGGACTTCTGCCTATGGAACAAAGAGAGGGA
TACTCATCGGCTTCGCGCCGTAGATCTGATACGTCAGTGGGCACAATATG
GGGAAAGTCAATAGCTCGTCTAGAGAGGAAGAAACCTGACTTTTTTGGCA
GTCCGGAGGCCAGATTCAGAATCCCATCAAGAGCCCGACGGGGATGTGCT
GTTTACAAAGGAATAGGTGCAACAGAGCACAACTGTCTTGGTCTCCGAAA
CGTTTTGGATTACCTTGCGTGCAATGTTCATCAAATCTCAAAGAAGACAA
GGGGAGAACTCACCACTACGGTCTCCCAGTTTCCCCGCTGGTGCATCGTG
AATTCGGCATGTAGGAAACTGGACGCCTGGAAAGAAAAAGTATTTTTTCA
GAACATCGGTGACCTCGCTCTTGTCGGAGTATTTATCCACTACTTCCAGC
ACCGTTGTGATCGACGTACGGCGAAGAAGAAGGTCGGCTATCTGCTTGTA
GTTTGTGATGCAGCTGGTTCTGGTAGTGGTGCGCGATGGAAGAGGGATGT
CCATGATGTTTCCGTGGCGCTCCGAAGCCTTTGTGGGTAGCGGAGCACGA
GGACGGCCGATGGAGTTTTGAATCCCGACAAGGTGAATCCTTCTCTTTGG
TTGAAACTTGCATTATATCTTACAAGCATTCATTTTAAAGAACAGAATGT
CTGCATTCACAGCACCTGTTGCTGTTTCAGTGATATAAGCTATTGCGAGT
CCTCGGCAGGCTACGTTACGCATTGTTATGACATACTTTCATTTTGTTTC
TGAATGAGCTAATCCAATGAAACTAAACTCACGTGCGCATACACTTTAAT
GAACGGTGAAAACAGTTGCGGGATACAGTTTTACTAAACAAAAAGCACTT
CCTTGATTATATTTAGGAGACTACTATTGGGGTTCGCTGTACATGTACGG
ATTTATCGTGATCTGTCTGCAGTCGTCGGGCAAGGAACGTTTAGCGCCAG
TATCATCCGTGCCATTCACTTCGAAATTCGCCACGTCAACGTATATTGCT
ATAATCTTCCTCATTGCGCGCGTCGCCTGAAGACGATAGTAGTCAATATC
AACAGCGATTTTGATCTCATCAAGAATAACATCTTCTAGGCCCTTGATGA
CGCGATCCATTATCTTCGCCAGTGGCCGACGCAGCAAGGACATCGTTATT
TTCTCCCGCTGTTTCCCACCAGTCCTCTTCCGCCCATACTTCTTGTAAAC
AGCTTTTCCCTCTTCAATACCTGCTGTGTTTGCCACAAGTAAGACTGCTT
CGAGGCAAACTACAGCGTCTTCTTCAGACAACTCCATGAGTATGTTCCAA
GGTACAAATCGAACAATTTGAAGCTTCCTGTGATCCCTGACTGCTTTGAT
TTGCTCCTCTACCAAATTGGGAAGGCAAGAAGGATTCCTCCTTTGATTAG
CAATACATGCGCATCGTAGAATATGCTCTGACGAGGCACACATATGGAGC
ACTGTTTCTTGCAGTCTAACGTGTGTGTCGCCCTCAAACCATTCCTTCAC
TGAATTCTTGTTACATAAAGACGGGCTAAACAAAGCTATCTCGTTCTGGC
GTAGGGGAAGCCTCTTCATTTTTTGTTCACCTATCGCCATGTACCGACCG
AACACGATTTTGAGACCCCAATGCACCAAAGCGGAAGATGGATATCTTCT
CATTGTTTCGAAAAGTATACGCGCTTCTCTCGCGCTCGGTAACTACGCAG
CAAAATCAAAAACATTCTCCCACAAGCGGACCTTAGTCTCCCAACATGTA
CTTTGGTCCAACAGCCGAAAAGTGTGATTCACGTGTAAATAATGGGCAAA
CTCTCTGGCGCTCAACTCCTTACTTTTCTCAAGCTCTTCATCATTGTTCT
CTTGATTCCCATGAGAAAATCTTTTCTCGTCCATAACACCTCGTGTCCAT
TCCAGCACATCAGGAATCGTCCCCTTAAGCACCACCTTTGACAACGATGG
GTCTCCATCGTCGCCGTCAATTGAACCGGAGCGCTCCTCTAGCAGGGAAG
AGATTTTCTTCTTCACTTTTTCCCCCGGCGAGTTTGTTCTCCTATACTTT
CTTACAGAAACACTCCGGGTACCGAATTGTCTCGACTGCAGCAGAGTTGT
AAAAGATCTTCTAGAGTTCTTGGAAAGTCGATCTCTCACGCACGTCGTCC
GAAGCATGTCGCCCGGTAGAGTTTTGTGCCTCCGTTTCATGACCCTGTGA
TTGTCTTTCCACGGAAGTGTAGCCGAAGGCGCCAAATGCTTGAAGCTCGT
CTACGAGTGCATTCCTTCCGCGATGAGGTACTATCACGTACTCCCATCAC
TCAACTGCGAAGTGAAGTTTATATGCCTACAAGCGTACTGGCGAACGAGA
GGCGTACCGGTCACCATGGCGAATAACGGCTTTCTATGCTTATCGTTTGA
CTGTCAATTGTTTTGCAGCGTGACATGATTGCATGTATGGCCTCACTGGG
GCCTGCCTGTCCACGAGGCAGCGAGCTCGCCAAAATGAATGTACAAAATG
TACCCTTGTCCAGATGTAACATCTTTACAGCAACAAGCCACTTGAAATAG
AATTCGAACTTTGGCTCCGCTTCTGGCACCGCTTCTAGCTAGGTATCTAC
CAACGGTACCAACGGTACCAACGGTACCGTTACGGTACAATTATACACAT
GGCATCGTGCAGGCTTCCGTTCTGGGGTGCATCCACAACAGCAACAGCGG
GCCTAATGATTCCAATCAATTTGTCGTGGGTGAAAAGGGGAAGGTCACAA
GTTGTGGCTCGCAACAGAACCACCTTTCGGCGGCAAGTTAGCACATCATT
CGAAACTGCCTGCTTTGGAAGAGGCCACGCCTGAGGCAGCGCGGAAAGTG
AGACACGGTGCAAGCAAGAGTTGGAAAACGTAGTGGTGCTGCGTTGAAGA
TTGCGTTCTATATGGTAGCCGAGGGAACTCGAAGTTGAAGCTATTATGCG
AGTCGGTCCTGTATCTCTCAATTAGCTACTGCATTCTTGGCGGGCGCCTT
TGAGATCGGTCTCGACGGTAAGGCAAACTCGATGAACGTTAGCGGAGTGG
TGCTAAAGGAAGGTGACCTGGTGAAGCTTGACGAAGGAAACGGAGAACTG
GTGTCCGGGTATGCGCCAAATCTTGAGCCAAAGCTGCCCAGGAGACTTCT
CAAGTTTGTAATTTGGACGGACGCGAGGAAGAAGCTACTTTTCAATGCTG
ACACACTGAAAGACCATCGAAAGGTATTGGGGTCTGTCGCCGAAGGGGTC
GGACTTTGTCGCACAGGGCATATGTTCTTTGAAGCCGGTACGAATCATAG
CGGTGCGTGAGATGGTATTCAAGAACAGTGAAGAAGGCAGAAGAAAGGCA
TTGAACAATGTTCGGCCTATGCGATGGGAAGACTTTGCTGAGATCTTCCG
TAACATGGATGGACTTTTTGTGACGATTGGGCTACTTGACTCACCTTTGA
ACGAGGTTTTGATGCATGGTGATTTATCATAGTCATCGTGGATGTCGATT
TATTCATATCAAACGGGGAAAGGGAGGCTAGTTTACGGGGGCGTTTAGGT
ATCGAAGAAGAGTTGTATTGCTCTGCGCCGATACATATCACATACTAAGG
GCGAAGCAACGTGTTACCCGAACGGACCTATCCGCTCCTCCTTCCTTCCG
TCCAGCAACCAGGAGATAGAATGGATGGATCTAGTCATTCTTCGCTGTGT
GTCTTGTGCTGTCCGAAAGTAGGCTGTTTTGATCAGCGACACAAATTGGT
GTCGCTTGCGTACTGTAATAACCCGGTTCCATGAACGGTCGTTCTGCGCT
TACCAAATGTCGGTCTCCCGTTAATACTTCCTGCGTTGCCTTCATAGGCT
TGGTGATTCTGCCAGGTCAGACGCAAGCAACTAAAGGCGTTCTCGTGCAC
TCCTGGAAATCCCGTTTGCTGGGTTTACGCGGAAGGCCTATTTATGAACA
TTGTGGGTGCAACAAGTTATTCTACTTCTCGTCTCCTGTCTCATTCTTTT
AATAGTTTTGCTGACGATCGACACTCTCTCCACTTTCTTTTTTGTTCTGA
ACATGACGAAACGGAACATTGAATTGACCTCTTCCGAAATGACACCGAAA
GAGCGCGTGAAGGTTGACACAGAAGACGCAGCTTGGCATCCGACGGAGGC
ACCGAAAGAGCGCTTGAAGGTTGATACAGGAGACGCAGCTTGGCATTCGG
CGGAAGCACCGAAAGAGCGCGTGAAGGTTTACACAGGAGACGCACCTTGG
CATCCAACAAAGGCACCGAAAAAGCGCGTGAAGGTTGACACAGGAGACGC
AGCTTGGCATTCGACGGTCGAAGATATCGAGGAGCTTTGCGTGGCGTTTT
CTATGCTAACGATTTCTGCGGATGAATGA
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Coding sequence (CDS) from alignment at tig00000258_pilon:27302..31830-

>Ggra9901.t1 ID=Ggra9901.t1|Name=Ggra9901.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1383bp|location=Sequence derived from alignment at tig00000258_pilon:27302..31830- (Gracilaria gracilis GNS1m male)
ATGCTTGATATATCTCCAACGGAACCAGCGAAAAAGTCCAAGAAATCGAG
AGTTTTCTCAAATGAGTTTCGTGGAAGAAAGCTTTTTGCGTGTGATGCTA
TGGGAGAGGCTGAAAAAGATGGACTTCTGCCTATGGAACAAAGAGAGGGA
TACTCATCGGCTTCGCGCCGTAGATCTGATACGTCAGTGGGCACAATATG
GGGAAAGTCAATAGCTCGTCTAGAGAGGAAGAAACCTGACTTTTTTGGCA
GTCCGGAGGCCAGATTCAGAATCCCATCAAGAGCCCGACGGGGATGTGCT
GTTTACAAAGGAATAGGTGCAACAGAGCACAACTGTCTTGGTCTCCGAAA
CGTTTTGGATTACCTTGCGTGCAATGTTCATCAAATCTCAAAGAAGACAA
GGGGAGAACTCACCACTACGGTCTCCCAGTTTCCCCGCTGGTGCATCGTG
AATTCGGCATGTAGGAAACTGGACGCCTGGAAAGAAAAAGTATTTTTTCA
GAACATCGGTGACCTCGCTCTTGTCGGAGTATTTATCCACTACTTCCAGC
ACCGTTGTGATCGACGTACGGCGAAGAAGAAGGTCGGCTATCTGCTTGTA
GTTTGTGATGCAGCTGGTTCTGGTAGTGGTGCGCGATGGAAGAGGGATGT
CCATGATGTTTCCGTGGCGCTCCGAAGCCTTTCTACTGCATTCTTGGCGG
GCGCCTTTGAGATCGGTCTCGACGGTAAGGCAAACTCGATGAACGTTAGC
GGAGTGGTGCTAAAGGAAGGTGACCTGGTGAAGCTTGACGAAGGAAACGG
AGAACTGGTGTCCGGGTATGCGCCAAATCTTGAGCCAAAGCTGCCCAGGA
GACTTCTCAAGTTTGTAATTTGGACGGACGCGAGGAAGAAGCTACTTTTC
AATGCTGACACACTGAAAGACCATCGAAAGGTATTGGGGTCTGTCGCCGA
AGGGGTCGGACTTTGTCGCACAGGGCATATGTTCTTTGAAGCCGGTACGA
ATCATAGCGTTTTGCTGACGATCGACACTCTCTCCACTTTCTTTTTTGTT
CTGAACATGACGAAACGGAACATTGAATTGACCTCTTCCGAAATGACACC
GAAAGAGCGCGTGAAGGTTGACACAGAAGACGCAGCTTGGCATCCGACGG
AGGCACCGAAAGAGCGCTTGAAGGTTGATACAGGAGACGCAGCTTGGCAT
TCGGCGGAAGCACCGAAAGAGCGCGTGAAGGTTTACACAGGAGACGCACC
TTGGCATCCAACAAAGGCACCGAAAAAGCGCGTGAAGGTTGACACAGGAG
ACGCAGCTTGGCATTCGACGGTCGAAGATATCGAGGAGCTTTGCGTGGCG
TTTTCTATGCTAACGATTTCTGCGGATGAATGA
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