Ggra990.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra990.t1
Unique NameGgra990.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length522
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000027_piloncontigtig00000027_pilon:82848..84413 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra990Ggra990Gracilaria gracilis GNS1m malegenetig00000027_pilon 82848..84413 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra990.t1.stop1Ggra990.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000027_pilon 82848..82850 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra990.t1.CDS1Ggra990.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000027_pilon 82848..84413 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra990.t1.exon1Ggra990.t1.exon1Gracilaria gracilis GNS1m maleexontig00000027_pilon 82848..84413 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra990.t1.start1Ggra990.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000027_pilon 84411..84413 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra990.t1Ggra990.t1Gracilaria gracilis GNS1m malepolypeptidetig00000027_pilon 82848..84413 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra990.t1 ID=Ggra990.t1|Name=Ggra990.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=522bp
MDHARVSGALILFYLFSAVALRVCSASPVEDISASRVGAINSSSRQAEDI
PEPWEVINVMFYIEKWGCDVQDLEKQWTSSKSARVLQHMDRNHVFDDDDD
HSWAEKSRSVWNSVKKTKADELCYISLAKERRKCCEEATKRERKKGTVDD
DAFEACMEEGEEYFEWLDEGSIHLDGDKENYMERELEMLSKVVEMQMASD
VEHEVAEDGDVELGHEEEVKKVKKERQRARQKLKDMKRKKREKMQRAKER
RRKRRAEGRKAREARRKQRDDSKIMREEAQARRREWMQKVREERKKQRQE
EKERREASRAAISKAKGEARKLRQKEQAERRLKKFVQRMKSAEVAILAHE
THAIPGRVLKDYQQFRKQLSHCYKDNVMGTFYKKSEKRWMACTMLRSSKA
RVGYCADLREVDGDDKRLKRAPIHCFESGRLSLQLQQLQSSGEQQTASAL
TEAASRSSAEDAKPVATAATQRAAVTFVDLFSTDGDACLQSDISYTCYAL
CCDTMYYGSHFCRDSGTTCLG*
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spliced messenger RNA

>Ggra990.t1 ID=Ggra990.t1|Name=Ggra990.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1566bp|location=Sequence derived from alignment at tig00000027_pilon:82848..84413- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACCACGCCAGAGTGAGTGGGGCGCTGATACTATTCTACCTTTTCAG
CGCTGTAGCTCTTCGTGTCTGCAGCGCGTCGCCGGTGGAGGACATTTCTG
CAAGTCGGGTGGGCGCTATCAACAGTAGTTCTCGACAGGCGGAAGACATT
CCGGAGCCGTGGGAAGTGATTAACGTGATGTTCTACATCGAGAAGTGGGG
CTGTGACGTTCAAGACCTGGAGAAGCAATGGACGTCATCAAAGTCTGCGC
GAGTGCTTCAACATATGGACAGAAATCATGTGTTCGACGACGACGATGAC
CACTCGTGGGCCGAAAAGAGTAGGTCGGTGTGGAACTCTGTGAAGAAGAC
GAAGGCTGACGAACTGTGCTACATCTCGCTGGCGAAGGAGCGCAGGAAAT
GCTGCGAAGAAGCGACCAAGCGTGAGCGAAAGAAGGGCACTGTGGACGAC
GACGCGTTTGAAGCGTGTATGGAAGAGGGTGAGGAGTACTTTGAGTGGCT
TGATGAGGGCTCGATTCATCTGGACGGAGATAAGGAGAACTACATGGAGA
GGGAGCTGGAAATGCTCTCCAAGGTGGTGGAGATGCAAATGGCGTCTGAC
GTTGAACACGAGGTAGCTGAGGATGGCGATGTTGAGCTGGGTCACGAGGA
GGAGGTGAAGAAGGTGAAGAAGGAGCGGCAGCGTGCAAGGCAGAAGCTGA
AGGACATGAAGCGAAAGAAAAGGGAAAAAATGCAGAGAGCGAAGGAGAGG
CGCAGGAAACGGCGAGCGGAAGGCAGGAAAGCAAGGGAAGCGAGAAGGAA
ACAACGAGATGACAGCAAGATAATGCGGGAAGAGGCGCAAGCACGGCGAC
GCGAATGGATGCAGAAAGTAAGGGAAGAGAGGAAGAAACAACGACAAGAA
GAGAAGGAACGGCGGGAAGCAAGCAGAGCGGCAATCAGCAAAGCCAAGGG
CGAGGCCAGAAAACTGCGGCAGAAAGAACAGGCGGAGCGGCGATTGAAGA
AGTTCGTGCAGCGCATGAAGAGCGCGGAGGTGGCCATTCTGGCGCACGAG
ACGCACGCGATTCCAGGGCGCGTGCTCAAGGACTACCAGCAGTTTCGCAA
GCAGCTGAGCCATTGCTACAAGGATAATGTGATGGGCACGTTCTACAAGA
AGTCGGAGAAGCGATGGATGGCGTGCACCATGCTGCGCTCCTCAAAGGCC
AGAGTGGGCTACTGCGCGGACCTGCGCGAGGTGGACGGCGACGACAAGCG
GCTGAAGCGCGCGCCCATCCACTGCTTCGAGTCCGGGCGGTTGAGTCTGC
AGCTGCAGCAGCTGCAGAGCTCGGGCGAGCAGCAAACGGCGTCGGCGCTG
ACGGAGGCGGCCTCTCGCTCGTCCGCTGAGGACGCCAAGCCCGTGGCGAC
TGCTGCGACGCAGCGCGCGGCGGTGACGTTCGTGGACCTGTTCTCAACTG
ACGGCGACGCGTGTCTGCAGTCGGACATCTCGTACACGTGCTACGCGCTG
TGCTGCGACACCATGTACTACGGCAGCCACTTTTGCCGCGACTCGGGTAC
CACGTGTCTGGGCTAG
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protein sequence of Ggra990.t1

>Ggra990.t1 ID=Ggra990.t1|Name=Ggra990.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=522bp
MDHARVSGALILFYLFSAVALRVCSASPVEDISASRVGAINSSSRQAEDI
PEPWEVINVMFYIEKWGCDVQDLEKQWTSSKSARVLQHMDRNHVFDDDDD
HSWAEKSRSVWNSVKKTKADELCYISLAKERRKCCEEATKRERKKGTVDD
DAFEACMEEGEEYFEWLDEGSIHLDGDKENYMERELEMLSKVVEMQMASD
VEHEVAEDGDVELGHEEEVKKVKKERQRARQKLKDMKRKKREKMQRAKER
RRKRRAEGRKAREARRKQRDDSKIMREEAQARRREWMQKVREERKKQRQE
EKERREASRAAISKAKGEARKLRQKEQAERRLKKFVQRMKSAEVAILAHE
THAIPGRVLKDYQQFRKQLSHCYKDNVMGTFYKKSEKRWMACTMLRSSKA
RVGYCADLREVDGDDKRLKRAPIHCFESGRLSLQLQQLQSSGEQQTASAL
TEAASRSSAEDAKPVATAATQRAAVTFVDLFSTDGDACLQSDISYTCYAL
CCDTMYYGSHFCRDSGTTCLG*
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mRNA from alignment at tig00000027_pilon:82848..84413-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra990.t1 ID=Ggra990.t1|Name=Ggra990.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1566bp|location=Sequence derived from alignment at tig00000027_pilon:82848..84413- (Gracilaria gracilis GNS1m male)
ATGGACCACGCCAGAGTGAGTGGGGCGCTGATACTATTCTACCTTTTCAG
CGCTGTAGCTCTTCGTGTCTGCAGCGCGTCGCCGGTGGAGGACATTTCTG
CAAGTCGGGTGGGCGCTATCAACAGTAGTTCTCGACAGGCGGAAGACATT
CCGGAGCCGTGGGAAGTGATTAACGTGATGTTCTACATCGAGAAGTGGGG
CTGTGACGTTCAAGACCTGGAGAAGCAATGGACGTCATCAAAGTCTGCGC
GAGTGCTTCAACATATGGACAGAAATCATGTGTTCGACGACGACGATGAC
CACTCGTGGGCCGAAAAGAGTAGGTCGGTGTGGAACTCTGTGAAGAAGAC
GAAGGCTGACGAACTGTGCTACATCTCGCTGGCGAAGGAGCGCAGGAAAT
GCTGCGAAGAAGCGACCAAGCGTGAGCGAAAGAAGGGCACTGTGGACGAC
GACGCGTTTGAAGCGTGTATGGAAGAGGGTGAGGAGTACTTTGAGTGGCT
TGATGAGGGCTCGATTCATCTGGACGGAGATAAGGAGAACTACATGGAGA
GGGAGCTGGAAATGCTCTCCAAGGTGGTGGAGATGCAAATGGCGTCTGAC
GTTGAACACGAGGTAGCTGAGGATGGCGATGTTGAGCTGGGTCACGAGGA
GGAGGTGAAGAAGGTGAAGAAGGAGCGGCAGCGTGCAAGGCAGAAGCTGA
AGGACATGAAGCGAAAGAAAAGGGAAAAAATGCAGAGAGCGAAGGAGAGG
CGCAGGAAACGGCGAGCGGAAGGCAGGAAAGCAAGGGAAGCGAGAAGGAA
ACAACGAGATGACAGCAAGATAATGCGGGAAGAGGCGCAAGCACGGCGAC
GCGAATGGATGCAGAAAGTAAGGGAAGAGAGGAAGAAACAACGACAAGAA
GAGAAGGAACGGCGGGAAGCAAGCAGAGCGGCAATCAGCAAAGCCAAGGG
CGAGGCCAGAAAACTGCGGCAGAAAGAACAGGCGGAGCGGCGATTGAAGA
AGTTCGTGCAGCGCATGAAGAGCGCGGAGGTGGCCATTCTGGCGCACGAG
ACGCACGCGATTCCAGGGCGCGTGCTCAAGGACTACCAGCAGTTTCGCAA
GCAGCTGAGCCATTGCTACAAGGATAATGTGATGGGCACGTTCTACAAGA
AGTCGGAGAAGCGATGGATGGCGTGCACCATGCTGCGCTCCTCAAAGGCC
AGAGTGGGCTACTGCGCGGACCTGCGCGAGGTGGACGGCGACGACAAGCG
GCTGAAGCGCGCGCCCATCCACTGCTTCGAGTCCGGGCGGTTGAGTCTGC
AGCTGCAGCAGCTGCAGAGCTCGGGCGAGCAGCAAACGGCGTCGGCGCTG
ACGGAGGCGGCCTCTCGCTCGTCCGCTGAGGACGCCAAGCCCGTGGCGAC
TGCTGCGACGCAGCGCGCGGCGGTGACGTTCGTGGACCTGTTCTCAACTG
ACGGCGACGCGTGTCTGCAGTCGGACATCTCGTACACGTGCTACGCGCTG
TGCTGCGACACCATGTACTACGGCAGCCACTTTTGCCGCGACTCGGGTAC
CACGTGTCTGGGCTAG
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Coding sequence (CDS) from alignment at tig00000027_pilon:82848..84413-

>Ggra990.t1 ID=Ggra990.t1|Name=Ggra990.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1566bp|location=Sequence derived from alignment at tig00000027_pilon:82848..84413- (Gracilaria gracilis GNS1m male)
ATGGACCACGCCAGAGTGAGTGGGGCGCTGATACTATTCTACCTTTTCAG
CGCTGTAGCTCTTCGTGTCTGCAGCGCGTCGCCGGTGGAGGACATTTCTG
CAAGTCGGGTGGGCGCTATCAACAGTAGTTCTCGACAGGCGGAAGACATT
CCGGAGCCGTGGGAAGTGATTAACGTGATGTTCTACATCGAGAAGTGGGG
CTGTGACGTTCAAGACCTGGAGAAGCAATGGACGTCATCAAAGTCTGCGC
GAGTGCTTCAACATATGGACAGAAATCATGTGTTCGACGACGACGATGAC
CACTCGTGGGCCGAAAAGAGTAGGTCGGTGTGGAACTCTGTGAAGAAGAC
GAAGGCTGACGAACTGTGCTACATCTCGCTGGCGAAGGAGCGCAGGAAAT
GCTGCGAAGAAGCGACCAAGCGTGAGCGAAAGAAGGGCACTGTGGACGAC
GACGCGTTTGAAGCGTGTATGGAAGAGGGTGAGGAGTACTTTGAGTGGCT
TGATGAGGGCTCGATTCATCTGGACGGAGATAAGGAGAACTACATGGAGA
GGGAGCTGGAAATGCTCTCCAAGGTGGTGGAGATGCAAATGGCGTCTGAC
GTTGAACACGAGGTAGCTGAGGATGGCGATGTTGAGCTGGGTCACGAGGA
GGAGGTGAAGAAGGTGAAGAAGGAGCGGCAGCGTGCAAGGCAGAAGCTGA
AGGACATGAAGCGAAAGAAAAGGGAAAAAATGCAGAGAGCGAAGGAGAGG
CGCAGGAAACGGCGAGCGGAAGGCAGGAAAGCAAGGGAAGCGAGAAGGAA
ACAACGAGATGACAGCAAGATAATGCGGGAAGAGGCGCAAGCACGGCGAC
GCGAATGGATGCAGAAAGTAAGGGAAGAGAGGAAGAAACAACGACAAGAA
GAGAAGGAACGGCGGGAAGCAAGCAGAGCGGCAATCAGCAAAGCCAAGGG
CGAGGCCAGAAAACTGCGGCAGAAAGAACAGGCGGAGCGGCGATTGAAGA
AGTTCGTGCAGCGCATGAAGAGCGCGGAGGTGGCCATTCTGGCGCACGAG
ACGCACGCGATTCCAGGGCGCGTGCTCAAGGACTACCAGCAGTTTCGCAA
GCAGCTGAGCCATTGCTACAAGGATAATGTGATGGGCACGTTCTACAAGA
AGTCGGAGAAGCGATGGATGGCGTGCACCATGCTGCGCTCCTCAAAGGCC
AGAGTGGGCTACTGCGCGGACCTGCGCGAGGTGGACGGCGACGACAAGCG
GCTGAAGCGCGCGCCCATCCACTGCTTCGAGTCCGGGCGGTTGAGTCTGC
AGCTGCAGCAGCTGCAGAGCTCGGGCGAGCAGCAAACGGCGTCGGCGCTG
ACGGAGGCGGCCTCTCGCTCGTCCGCTGAGGACGCCAAGCCCGTGGCGAC
TGCTGCGACGCAGCGCGCGGCGGTGACGTTCGTGGACCTGTTCTCAACTG
ACGGCGACGCGTGTCTGCAGTCGGACATCTCGTACACGTGCTACGCGCTG
TGCTGCGACACCATGTACTACGGCAGCCACTTTTGCCGCGACTCGGGTAC
CACGTGTCTGGGCTAG
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