Ggra9893.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9893.t1
Unique NameGgra9893.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length162
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000009_piloncontigtig00000009_pilon:44958..45530 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog38727.Pavir.J38817.1.p
PFAMsPG_binding_1
Max annot lvl35493|Streptophyta
GOsGO:0000229,GO:0003674,GO:0003756,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0006139,GO:0006351,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009266,GO:0009295,GO:0009314,GO:0009408,GO:0009416,GO:0009507,GO:0009508,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009628,GO:0009657,GO:0009658,GO:0009889,GO:0009941,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016020,GO:0016043,GO:0016070,GO:0016853,GO:0016860,GO:0016864,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0031323,GO:0031326,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0032774,GO:0034357,GO:0034641,GO:0034645,GO:0034654,GO:0042644,GO:0042646,GO:0042651,GO:0042793,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0055035,GO:0060255,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097659,GO:0140096,GO:1901360,GO:1901362,GO:1901576,GO:1903506,GO:2000112,GO:2001141
Evalue3.12e-05
EggNOG OGs28J9A@1|root,2QRN0@2759|Eukaryota,37RPC@33090|Viridiplantae,3G7JR@35493|Streptophyta,3KP55@4447|Liliopsida,3I8A8@38820|Poales
DescriptionPutative peptidoglycan binding domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9893Ggra9893Gracilaria gracilis GNS1m malegenetig00000009_pilon 44958..45530 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9893.t1Ggra9893.t1Gracilaria gracilis GNS1m malepolypeptidetig00000009_pilon 44958..45530 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9893.t1.stop1Ggra9893.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000009_pilon 44958..44960 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9893.t1.CDS1Ggra9893.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000009_pilon 44958..45005 -
Ggra9893.t1.CDS2Ggra9893.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000009_pilon 45093..45530 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9893.t1.exon1Ggra9893.t1.exon1Gracilaria gracilis GNS1m maleexontig00000009_pilon 44958..45005 -
Ggra9893.t1.exon2Ggra9893.t1.exon2Gracilaria gracilis GNS1m maleexontig00000009_pilon 45093..45530 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9893.t1.intron1Ggra9893.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000009_pilon 45006..45092 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9893.t1.start1Ggra9893.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000009_pilon 45528..45530 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9893.t1 ID=Ggra9893.t1|Name=Ggra9893.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=162bp
MHSAFVNPIPMLRATQQRVSTSVKVCMSEKPSDESGNTPATPPPAPKNPK
RTVRSNASFRNEFLPEFGRKGPGSGPPWDLRPKSLKKDADDPEVCGSCRG
TGRMTCTFCSGTSFYTEDGKELKCPACKGKKVTCSVCFGSKKNIELEGNW
WERGVAALFRK*
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spliced messenger RNA

>Ggra9893.t1 ID=Ggra9893.t1|Name=Ggra9893.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=486bp|location=Sequence derived from alignment at tig00000009_pilon:44958..45530- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACAGCGCTTTCGTCAACCCAATTCCGATGCTGCGTGCCACACAACA
ACGAGTTTCAACATCCGTGAAGGTATGCATGTCGGAGAAGCCTTCAGACG
AATCCGGAAACACCCCGGCTACACCACCTCCAGCTCCAAAGAACCCCAAG
AGAACCGTTCGTTCTAATGCTTCCTTTAGGAACGAGTTCCTGCCAGAATT
CGGGAGGAAGGGCCCTGGTTCAGGACCACCGTGGGATCTACGCCCGAAGA
GCTTGAAGAAAGATGCTGATGACCCGGAAGTGTGTGGCAGTTGTCGTGGA
ACTGGACGAATGACTTGTACCTTCTGCTCTGGTACATCTTTCTATACCGA
AGATGGCAAGGAGCTCAAGTGTCCAGCTTGCAAAGGAAAGAAGGTCACAT
GCTCCGTCTGCTTCGGGTCAAAGAAGAATATCGAGCTCGAGGGCAACTGG
TGGGAGAGAGGTGTGGCGGCCCTCTTCAGGAAATAG
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protein sequence of Ggra9893.t1

>Ggra9893.t1 ID=Ggra9893.t1|Name=Ggra9893.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=162bp
MHSAFVNPIPMLRATQQRVSTSVKVCMSEKPSDESGNTPATPPPAPKNPK
RTVRSNASFRNEFLPEFGRKGPGSGPPWDLRPKSLKKDADDPEVCGSCRG
TGRMTCTFCSGTSFYTEDGKELKCPACKGKKVTCSVCFGSKKNIELEGNW
WERGVAALFRK*
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mRNA from alignment at tig00000009_pilon:44958..45530-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9893.t1 ID=Ggra9893.t1|Name=Ggra9893.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=573bp|location=Sequence derived from alignment at tig00000009_pilon:44958..45530- (Gracilaria gracilis GNS1m male)
ATGCACAGCGCTTTCGTCAACCCAATTCCGATGCTGCGTGCCACACAACA
ACGAGTTTCAACATCCGTGAAGGTATGCATGTCGGAGAAGCCTTCAGACG
AATCCGGAAACACCCCGGCTACACCACCTCCAGCTCCAAAGAACCCCAAG
AGAACCGTTCGTTCTAATGCTTCCTTTAGGAACGAGTTCCTGCCAGAATT
CGGGAGGAAGGGCCCTGGTTCAGGACCACCGTGGGATCTACGCCCGAAGA
GCTTGAAGAAAGATGCTGATGACCCGGAAGTGTGTGGCAGTTGTCGTGGA
ACTGGACGAATGACTTGTACCTTCTGCTCTGGTACATCTTTCTATACCGA
AGATGGCAAGGAGCTCAAGTGTCCAGCTTGCAAAGGAAAGAAGGTCACAT
GCTCCGTCTGCTTCGGGTCAAAGAAGAATATCGAGCTCGTAAGTCATTCC
AACTCGTCGCTGTCCCAGTACCATTGAGACTGTTTTTAACTAACCATTTT
ACCTTCTTTTCTGACTGTTGTTTAGGAGGGCAACTGGTGGGAGAGAGGTG
TGGCGGCCCTCTTCAGGAAATAG
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Coding sequence (CDS) from alignment at tig00000009_pilon:44958..45530-

>Ggra9893.t1 ID=Ggra9893.t1|Name=Ggra9893.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=486bp|location=Sequence derived from alignment at tig00000009_pilon:44958..45530- (Gracilaria gracilis GNS1m male)
ATGCACAGCGCTTTCGTCAACCCAATTCCGATGCTGCGTGCCACACAACA
ACGAGTTTCAACATCCGTGAAGGTATGCATGTCGGAGAAGCCTTCAGACG
AATCCGGAAACACCCCGGCTACACCACCTCCAGCTCCAAAGAACCCCAAG
AGAACCGTTCGTTCTAATGCTTCCTTTAGGAACGAGTTCCTGCCAGAATT
CGGGAGGAAGGGCCCTGGTTCAGGACCACCGTGGGATCTACGCCCGAAGA
GCTTGAAGAAAGATGCTGATGACCCGGAAGTGTGTGGCAGTTGTCGTGGA
ACTGGACGAATGACTTGTACCTTCTGCTCTGGTACATCTTTCTATACCGA
AGATGGCAAGGAGCTCAAGTGTCCAGCTTGCAAAGGAAAGAAGGTCACAT
GCTCCGTCTGCTTCGGGTCAAAGAAGAATATCGAGCTCGAGGGCAACTGG
TGGGAGAGAGGTGTGGCGGCCCTCTTCAGGAAATAG
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