Ggra9890.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9890.t1
Unique NameGgra9890.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length83
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000009_piloncontigtig00000009_pilon:39533..39863 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9890Ggra9890Gracilaria gracilis GNS1m malegenetig00000009_pilon 39533..39863 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9890.t1Ggra9890.t1Gracilaria gracilis GNS1m malepolypeptidetig00000009_pilon 39533..39863 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9890.t1.stop1Ggra9890.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000009_pilon 39533..39535 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9890.t1.CDS1Ggra9890.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000009_pilon 39533..39670 -
Ggra9890.t1.CDS2Ggra9890.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000009_pilon 39753..39863 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9890.t1.exon1Ggra9890.t1.exon1Gracilaria gracilis GNS1m maleexontig00000009_pilon 39533..39670 -
Ggra9890.t1.exon2Ggra9890.t1.exon2Gracilaria gracilis GNS1m maleexontig00000009_pilon 39753..39863 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9890.t1.intron1Ggra9890.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000009_pilon 39671..39752 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9890.t1.start1Ggra9890.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000009_pilon 39861..39863 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9890.t1 ID=Ggra9890.t1|Name=Ggra9890.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=83bp
MDRFHDEHLLPVPQPEQAPRWEVRTCRSPSGAFSHYFVDRLTGKTFSSSE
ELLAESRSVASTPASSPASTPATSPVPPSKKF*
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spliced messenger RNA

>Ggra9890.t1 ID=Ggra9890.t1|Name=Ggra9890.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=249bp|location=Sequence derived from alignment at tig00000009_pilon:39533..39863- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACCGCTTCCATGACGAACACCTTCTTCCAGTCCCCCAGCCAGAGCA
AGCTCCGCGTTGGGAAGTAAGAACCTGTCGTTCCCCGTCTGGTGCATTCT
CACACTACTTCGTTGACCGACTAACTGGCAAAACCTTTTCCTCCTCGGAA
GAGCTCCTCGCCGAATCTCGCTCGGTGGCTTCGACGCCTGCTTCGTCGCC
TGCTTCCACGCCCGCTACCTCCCCAGTACCCCCTTCAAAGAAGTTCTAA
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protein sequence of Ggra9890.t1

>Ggra9890.t1 ID=Ggra9890.t1|Name=Ggra9890.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=83bp
MDRFHDEHLLPVPQPEQAPRWEVRTCRSPSGAFSHYFVDRLTGKTFSSSE
ELLAESRSVASTPASSPASTPATSPVPPSKKF*
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mRNA from alignment at tig00000009_pilon:39533..39863-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9890.t1 ID=Ggra9890.t1|Name=Ggra9890.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=331bp|location=Sequence derived from alignment at tig00000009_pilon:39533..39863- (Gracilaria gracilis GNS1m male)
ATGGACCGCTTCCATGACGAACACCTTCTTCCAGTCCCCCAGCCAGAGCA
AGCTCCGCGTTGGGAAGTAAGAACCTGTCGTTCCCCGTCTGGTGCATTCT
CACACTACTTCGTAAGTTCACCGCCTGTCCTGTTCTTGCCCGCAAATTCA
TGTCCCCTTCTCACACACCTTCGCTCTGTCTTCTGCCACACAGGTTGACC
GACTAACTGGCAAAACCTTTTCCTCCTCGGAAGAGCTCCTCGCCGAATCT
CGCTCGGTGGCTTCGACGCCTGCTTCGTCGCCTGCTTCCACGCCCGCTAC
CTCCCCAGTACCCCCTTCAAAGAAGTTCTAA
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Coding sequence (CDS) from alignment at tig00000009_pilon:39533..39863-

>Ggra9890.t1 ID=Ggra9890.t1|Name=Ggra9890.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=249bp|location=Sequence derived from alignment at tig00000009_pilon:39533..39863- (Gracilaria gracilis GNS1m male)
ATGGACCGCTTCCATGACGAACACCTTCTTCCAGTCCCCCAGCCAGAGCA
AGCTCCGCGTTGGGAAGTAAGAACCTGTCGTTCCCCGTCTGGTGCATTCT
CACACTACTTCGTTGACCGACTAACTGGCAAAACCTTTTCCTCCTCGGAA
GAGCTCCTCGCCGAATCTCGCTCGGTGGCTTCGACGCCTGCTTCGTCGCC
TGCTTCCACGCCCGCTACCTCCCCAGTACCCCCTTCAAAGAAGTTCTAA
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