Ggra989.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra989.t1
Unique NameGgra989.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length165
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000027_piloncontigtig00000027_pilon:81801..82405 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2850.Phatr34933
PFAMsPro_isomerase
Max annot lvl2836|Bacillariophyta
KEGG koko:K09565
KEGG Pathwayko04020,ko04022,ko05012,ko05016,ko05145,map04020,map04022,map05012,map05016,map05145
Evalue7.69e-90
EggNOG OGsCOG0652@1|root,KOG0865@2759|Eukaryota,2XE7D@2836|Bacillariophyta
EC5.2.1.8
DescriptionPPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
COG categoryO
BRITEko00000,ko00001,ko01000,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra989Ggra989Gracilaria gracilis GNS1m malegenetig00000027_pilon 81801..82405 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra989.t1Ggra989.t1Gracilaria gracilis GNS1m malepolypeptidetig00000027_pilon 81801..82405 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra989.t1.stop1Ggra989.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000027_pilon 81801..81803 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra989.t1.CDS1Ggra989.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000027_pilon 81801..82138 -
Ggra989.t1.CDS2Ggra989.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000027_pilon 82249..82405 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra989.t1.exon1Ggra989.t1.exon1Gracilaria gracilis GNS1m maleexontig00000027_pilon 81801..82138 -
Ggra989.t1.exon2Ggra989.t1.exon2Gracilaria gracilis GNS1m maleexontig00000027_pilon 82249..82405 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra989.t1.intron1Ggra989.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000027_pilon 82139..82248 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra989.t1.start1Ggra989.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000027_pilon 82403..82405 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra989.t1 ID=Ggra989.t1|Name=Ggra989.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=165bp
MANPKVFFDMEIGGQAAGRIVMELRADVVPDTAENFRALCTGEKGFGFQN
SIFHRVIPNFMCQGGDFTNHNGTGGKSIYGHKFKDENFILKHEGAGILSM
ANAGRDTNGSQFFICTAKTTWLDGKHVVFGKVVEGYNVVKAIEQFGSPSG
ATSKEVKVAASGQL*
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spliced messenger RNA

>Ggra989.t1 ID=Ggra989.t1|Name=Ggra989.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=495bp|location=Sequence derived from alignment at tig00000027_pilon:81801..82405- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGAACCCCAAGGTGTTCTTCGATATGGAAATCGGCGGCCAGGCTGC
CGGGCGCATCGTGATGGAGCTGCGCGCCGACGTGGTGCCCGACACGGCGG
AGAACTTCCGCGCGCTGTGTACCGGCGAGAAGGGCTTTGGCTTCCAAAAC
TCCATCTTCCACCGCGTGATCCCCAACTTCATGTGCCAGGGCGGCGACTT
TACCAACCACAACGGCACGGGCGGCAAGTCCATCTACGGCCACAAGTTCA
AGGACGAGAACTTCATCCTCAAGCACGAGGGCGCCGGCATTCTGTCCATG
GCCAACGCCGGTCGCGACACTAACGGCTCGCAGTTCTTCATCTGCACGGC
CAAGACCACGTGGCTGGACGGCAAGCACGTGGTGTTCGGCAAGGTCGTCG
AGGGCTACAACGTGGTCAAGGCCATCGAGCAGTTTGGCAGCCCGTCGGGC
GCCACCTCAAAGGAGGTGAAGGTCGCCGCGTCTGGCCAGTTGTGA
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protein sequence of Ggra989.t1

>Ggra989.t1 ID=Ggra989.t1|Name=Ggra989.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=165bp
MANPKVFFDMEIGGQAAGRIVMELRADVVPDTAENFRALCTGEKGFGFQN
SIFHRVIPNFMCQGGDFTNHNGTGGKSIYGHKFKDENFILKHEGAGILSM
ANAGRDTNGSQFFICTAKTTWLDGKHVVFGKVVEGYNVVKAIEQFGSPSG
ATSKEVKVAASGQL*
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mRNA from alignment at tig00000027_pilon:81801..82405-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra989.t1 ID=Ggra989.t1|Name=Ggra989.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=605bp|location=Sequence derived from alignment at tig00000027_pilon:81801..82405- (Gracilaria gracilis GNS1m male)
ATGGCGAACCCCAAGGTGTTCTTCGATATGGAAATCGGCGGCCAGGCTGC
CGGGCGCATCGTGATGGAGCTGCGCGCCGACGTGGTGCCCGACACGGCGG
AGAACTTCCGCGCGCTGTGTACCGGCGAGAAGGGCTTTGGCTTCCAAAAC
TCCATCTGTACGTGCCGCTGCTTGCGCCGCGCTCCGCAGCACCCATCGAT
CTAACTGAGCCGTTGATTTTCTTTTCTTCTGTGTTGGTTGTGACGCGTGC
GTTGCTGCGCGCGCTAGTCCACCGCGTGATCCCCAACTTCATGTGCCAGG
GCGGCGACTTTACCAACCACAACGGCACGGGCGGCAAGTCCATCTACGGC
CACAAGTTCAAGGACGAGAACTTCATCCTCAAGCACGAGGGCGCCGGCAT
TCTGTCCATGGCCAACGCCGGTCGCGACACTAACGGCTCGCAGTTCTTCA
TCTGCACGGCCAAGACCACGTGGCTGGACGGCAAGCACGTGGTGTTCGGC
AAGGTCGTCGAGGGCTACAACGTGGTCAAGGCCATCGAGCAGTTTGGCAG
CCCGTCGGGCGCCACCTCAAAGGAGGTGAAGGTCGCCGCGTCTGGCCAGT
TGTGA
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Coding sequence (CDS) from alignment at tig00000027_pilon:81801..82405-

>Ggra989.t1 ID=Ggra989.t1|Name=Ggra989.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=495bp|location=Sequence derived from alignment at tig00000027_pilon:81801..82405- (Gracilaria gracilis GNS1m male)
ATGGCGAACCCCAAGGTGTTCTTCGATATGGAAATCGGCGGCCAGGCTGC
CGGGCGCATCGTGATGGAGCTGCGCGCCGACGTGGTGCCCGACACGGCGG
AGAACTTCCGCGCGCTGTGTACCGGCGAGAAGGGCTTTGGCTTCCAAAAC
TCCATCTTCCACCGCGTGATCCCCAACTTCATGTGCCAGGGCGGCGACTT
TACCAACCACAACGGCACGGGCGGCAAGTCCATCTACGGCCACAAGTTCA
AGGACGAGAACTTCATCCTCAAGCACGAGGGCGCCGGCATTCTGTCCATG
GCCAACGCCGGTCGCGACACTAACGGCTCGCAGTTCTTCATCTGCACGGC
CAAGACCACGTGGCTGGACGGCAAGCACGTGGTGTTCGGCAAGGTCGTCG
AGGGCTACAACGTGGTCAAGGCCATCGAGCAGTTTGGCAGCCCGTCGGGC
GCCACCTCAAAGGAGGTGAAGGTCGCCGCGTCTGGCCAGTTGTGA
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