Ggra9883.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9883.t1
Unique NameGgra9883.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length120
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000170_piloncontigtig00000170_pilon:273157..273516 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9883Ggra9883Gracilaria gracilis GNS1m malegenetig00000170_pilon 273157..273516 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9883.t1.stop1Ggra9883.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000170_pilon 273157..273159 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9883.t1.CDS1Ggra9883.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000170_pilon 273157..273516 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9883.t1.exon1Ggra9883.t1.exon1Gracilaria gracilis GNS1m maleexontig00000170_pilon 273157..273516 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9883.t1.start1Ggra9883.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000170_pilon 273514..273516 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9883.t1Ggra9883.t1Gracilaria gracilis GNS1m malepolypeptidetig00000170_pilon 273157..273516 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9883.t1 ID=Ggra9883.t1|Name=Ggra9883.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=120bp
MHQRSRPSESFSSYLSPKATFAEEEDLVPTPVRSAPVPLSAPVAVPPIAA
SVTGAPKTATNSELELPVDVRIELARIVERKKGHEQQAKKIEEEIQRLMN
ESKRVRDELAFEKLQMNTI*
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spliced messenger RNA

>Ggra9883.t1 ID=Ggra9883.t1|Name=Ggra9883.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=360bp|location=Sequence derived from alignment at tig00000170_pilon:273157..273516- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATCAACGTTCACGGCCATCTGAAAGTTTCTCTTCATACCTAAGTCC
GAAAGCGACATTCGCCGAAGAAGAGGATCTTGTGCCAACACCAGTTCGCA
GTGCGCCGGTTCCGCTATCGGCCCCCGTTGCGGTGCCACCAATCGCCGCG
AGTGTGACAGGAGCTCCCAAGACTGCCACGAACAGCGAATTGGAGTTGCC
AGTGGATGTTCGGATTGAGTTGGCGAGGATAGTGGAGCGCAAGAAAGGGC
ATGAACAGCAAGCAAAGAAAATTGAGGAGGAGATCCAGCGGTTAATGAAT
GAAAGCAAACGCGTACGTGACGAGCTAGCTTTCGAGAAGTTGCAGATGAA
CACAATCTAG
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protein sequence of Ggra9883.t1

>Ggra9883.t1 ID=Ggra9883.t1|Name=Ggra9883.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=120bp
MHQRSRPSESFSSYLSPKATFAEEEDLVPTPVRSAPVPLSAPVAVPPIAA
SVTGAPKTATNSELELPVDVRIELARIVERKKGHEQQAKKIEEEIQRLMN
ESKRVRDELAFEKLQMNTI*
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mRNA from alignment at tig00000170_pilon:273157..273516-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9883.t1 ID=Ggra9883.t1|Name=Ggra9883.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=360bp|location=Sequence derived from alignment at tig00000170_pilon:273157..273516- (Gracilaria gracilis GNS1m male)
ATGCATCAACGTTCACGGCCATCTGAAAGTTTCTCTTCATACCTAAGTCC
GAAAGCGACATTCGCCGAAGAAGAGGATCTTGTGCCAACACCAGTTCGCA
GTGCGCCGGTTCCGCTATCGGCCCCCGTTGCGGTGCCACCAATCGCCGCG
AGTGTGACAGGAGCTCCCAAGACTGCCACGAACAGCGAATTGGAGTTGCC
AGTGGATGTTCGGATTGAGTTGGCGAGGATAGTGGAGCGCAAGAAAGGGC
ATGAACAGCAAGCAAAGAAAATTGAGGAGGAGATCCAGCGGTTAATGAAT
GAAAGCAAACGCGTACGTGACGAGCTAGCTTTCGAGAAGTTGCAGATGAA
CACAATCTAG
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Coding sequence (CDS) from alignment at tig00000170_pilon:273157..273516-

>Ggra9883.t1 ID=Ggra9883.t1|Name=Ggra9883.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=360bp|location=Sequence derived from alignment at tig00000170_pilon:273157..273516- (Gracilaria gracilis GNS1m male)
ATGCATCAACGTTCACGGCCATCTGAAAGTTTCTCTTCATACCTAAGTCC
GAAAGCGACATTCGCCGAAGAAGAGGATCTTGTGCCAACACCAGTTCGCA
GTGCGCCGGTTCCGCTATCGGCCCCCGTTGCGGTGCCACCAATCGCCGCG
AGTGTGACAGGAGCTCCCAAGACTGCCACGAACAGCGAATTGGAGTTGCC
AGTGGATGTTCGGATTGAGTTGGCGAGGATAGTGGAGCGCAAGAAAGGGC
ATGAACAGCAAGCAAAGAAAATTGAGGAGGAGATCCAGCGGTTAATGAAT
GAAAGCAAACGCGTACGTGACGAGCTAGCTTTCGAGAAGTTGCAGATGAA
CACAATCTAG
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