Ggra9882.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9882.t1
Unique NameGgra9882.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length399
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000170_piloncontigtig00000170_pilon:270849..272649 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9882Ggra9882Gracilaria gracilis GNS1m malegenetig00000170_pilon 270849..272649 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9882.t1Ggra9882.t1Gracilaria gracilis GNS1m malepolypeptidetig00000170_pilon 270849..272649 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9882.t1.start1Ggra9882.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000170_pilon 270849..270851 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9882.t1.CDS1Ggra9882.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000170_pilon 270849..270929 +
Ggra9882.t1.CDS2Ggra9882.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000170_pilon 271360..271746 +
Ggra9882.t1.CDS3Ggra9882.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000170_pilon 271832..272157 +
Ggra9882.t1.CDS4Ggra9882.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000170_pilon 272247..272649 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9882.t1.exon1Ggra9882.t1.exon1Gracilaria gracilis GNS1m maleexontig00000170_pilon 270849..270929 +
Ggra9882.t1.exon2Ggra9882.t1.exon2Gracilaria gracilis GNS1m maleexontig00000170_pilon 271360..271746 +
Ggra9882.t1.exon3Ggra9882.t1.exon3Gracilaria gracilis GNS1m maleexontig00000170_pilon 271832..272157 +
Ggra9882.t1.exon4Ggra9882.t1.exon4Gracilaria gracilis GNS1m maleexontig00000170_pilon 272247..272649 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9882.t1.intron1Ggra9882.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000170_pilon 270930..271359 +
Ggra9882.t1.intron2Ggra9882.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000170_pilon 271747..271831 +
Ggra9882.t1.intron3Ggra9882.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000170_pilon 272158..272246 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9882.t1.stop1Ggra9882.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000170_pilon 272647..272649 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9882.t1 ID=Ggra9882.t1|Name=Ggra9882.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=399bp
MQEILDILFFCDLSSGRKNRDSLLEIGPLPPPPSPSPPPPSPPTPPPPSI
PPHAQPPPPHAPPLPHHAPPPQQHAPPPPQHAPPSTKHAPPPPPHAPPLP
QHAPPPPQHAPPSPKHAPPTPPHAPPLPPGRTAPPSQPLGVAAARLHPLS
FPTAAAARTNSDLLLALCASSSSLSSRPPPPPQPLLPPLCMLARALSLPL
LPPPPVRRTSRRAARAAALRTLERMASATLAPRRARRSIAKVTSRLLTPL
PRLALPDDRRSPGAPVAATRKWEKSLTEKSERLDAVRSAMLATSPPSQPC
ALPIWTGKRRCVVKIELEQLHTSDSSSSFYVTQPYSLPQLLNLPTNTPTP
PVCAPPQLPKPFLTPATMSPHTTASPPVQQHASYLPPQPPPLANHAMH*
back to top

spliced messenger RNA

>Ggra9882.t1 ID=Ggra9882.t1|Name=Ggra9882.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1197bp|location=Sequence derived from alignment at tig00000170_pilon:270849..272649+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGGAGATCTTGGATATATTGTTCTTTTGTGATCTTTCTTCTGGTCG
TAAGAATCGGGATAGTCTTTTAGAGATTGGCccTTTgccgccgccgccgt
cgccctcgccaccgccgccgtcgccgccgacgccgccgccACCGTCGATT
CCGCCGCACGCGCAACCACCGCCGCCGCACGCTCCGCCACTGCCGCACCA
CGCGCCGCCACCGCAGCAGCACGCACCGCCACCACCGCAGCACGCGCCGC
CATCGACGAAGCACGCGCCGCCACCGCCGCCGCACGCTCCGCCACTGCCG
CAGCACGCGCCGCCACCACCGCAGCACGCGCCGCCATCGCCGAAGCACGC
GCCGCCAACGCCGCCGCACGCGCCACCACTGCCACCGGGCAGAACGGCGC
CGCCTTCGCAGCCGTTGGGCGTGGCCGCTGCGCGGCTGCACCCGCTGTCT
TTCCCCACAGCCGCCGCTGCGCGCACCAATAGCGACTTGCTGCTTGCGCT
GTGCGcgtcgtcgtcgtcgctgtcgtcCCGGCCGCCGCCACCACCACAGC
CGCTTTTGCCACCACTCTGCATGCTGGCGCGCGCGCTGTCGTTACCGCTG
CTGCCACCTCCGCCAGTGCGCCGCACATCTCGCCGTGCTGCGAGGGCTGC
GGCGCTTCGCACGCTAGAACGAATGGCTTCGGCAACTTTGGCTCCGCGAC
GTGCGCGCAGAAGTATCGCTAAGGTCACAAGTCGGTTGCTAACGCCGCTG
CCGCGCCTGGCGCTCCCTGACGACCGACGTTCGCCAGGCGCCCCAGTGGC
CGCTACTAGGAAGTGGGAGAAGAGTCTCACAGAAAAGTCCGAGAGACTAG
ACGCTGTTCGCTCGGCTATGTTGGCTACGTCACCGCCTTCGCAACCTTGT
GCATTGCCAATCTGGACGGGTAAGAGACGTTGTGTCGTAAAAATTGAGCT
TGAACAGCTGCATACCTCAGATTCATCGTCTTCTTTTTACGTCACGCAGC
CGTATAGTCTGCCTCAGCTGCTTAATTTACCGACCAACACTCCGACTCCG
CCTGTGTGTGCGCCGCCCCAGTTGCCGAAACCCTTCTTAACGCCCGCCAC
CATGTCGCCACATACCACCGCCTCACCACCCGTGCAACAGCACGCAAGCT
ATTTGCCGCCGCAACCACCACCACTGGCTAACCACGCCATGCACTAG
back to top

protein sequence of Ggra9882.t1

>Ggra9882.t1 ID=Ggra9882.t1|Name=Ggra9882.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=399bp
MQEILDILFFCDLSSGRKNRDSLLEIGPLPPPPSPSPPPPSPPTPPPPSI
PPHAQPPPPHAPPLPHHAPPPQQHAPPPPQHAPPSTKHAPPPPPHAPPLP
QHAPPPPQHAPPSPKHAPPTPPHAPPLPPGRTAPPSQPLGVAAARLHPLS
FPTAAAARTNSDLLLALCASSSSLSSRPPPPPQPLLPPLCMLARALSLPL
LPPPPVRRTSRRAARAAALRTLERMASATLAPRRARRSIAKVTSRLLTPL
PRLALPDDRRSPGAPVAATRKWEKSLTEKSERLDAVRSAMLATSPPSQPC
ALPIWTGKRRCVVKIELEQLHTSDSSSSFYVTQPYSLPQLLNLPTNTPTP
PVCAPPQLPKPFLTPATMSPHTTASPPVQQHASYLPPQPPPLANHAMH*
back to top

mRNA from alignment at tig00000170_pilon:270849..272649+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9882.t1 ID=Ggra9882.t1|Name=Ggra9882.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1801bp|location=Sequence derived from alignment at tig00000170_pilon:270849..272649+ (Gracilaria gracilis GNS1m male)
ATGCAGGAGATCTTGGATATATTGTTCTTTTGTGATCTTTCTTCTGGTCG
TAAGAATCGGGATAGTCTTTTAGAGATTGGCGTAGGTGCTGGGCGCATGA
TCTGTGACGACAACAGATGCGTCGGAACCTGGCGGTGTAGCGTTGGGTTA
CGAGCTGCGTCTTTACGATTCCAAATCTTTCAGTTCTTTTCCAATACGAA
CGTTGCAAGTTTAGAAGCTTTCAATCTTGAAACCGCTAGATTTCGGTCAT
TTTGATAGTACAACACTGGAAATTTTTTTTAAAATCTTAAACTTAATTTA
TTGAAGGCAATGCATGAGCTCTTCACAACTACCTCTGGGGTAGAATATTC
AAGTTCAAAGTTTGGAAGCAAAAGTTTTCTTTATTTTTGCATGATCTTGT
TACAAGAATCTTGTTTTAATAGGTGTCCTAGGACATCCAAAAAACTACGA
TAATAAAGGCAAGAGGCTTGATGCGCGAgccgcgtcgccgcccctgccgc
ggcggccgcagccTTTgccgccgccgccgtcgccctcgccaccgccgccg
tcgccgccgacgccgccgccACCGTCGATTCCGCCGCACGCGCAACCACC
GCCGCCGCACGCTCCGCCACTGCCGCACCACGCGCCGCCACCGCAGCAGC
ACGCACCGCCACCACCGCAGCACGCGCCGCCATCGACGAAGCACGCGCCG
CCACCGCCGCCGCACGCTCCGCCACTGCCGCAGCACGCGCCGCCACCACC
GCAGCACGCGCCGCCATCGCCGAAGCACGCGCCGCCAACGCCGCCGCACG
CGCCACCACTGCCACCGGGCAGAACGGCGCCGCCTTCGCAGCCGTTGGGC
GTGGCCGCTGCGCGGCTGCACCCGCTGTCTTTCCCCACAGCCGCCGCTGT
ATTACGCGCGCAGCACAGTGGAAAACTCTGTGTGTTTCACGTTCTGCATG
GACATGCTGACCGAAAGCCAATATCCGAAAAAGGCGCGCACCAATAGCGA
CTTGCTGCTTGCGCTGTGCGcgtcgtcgtcgtcgctgtcgtcCCGGCCGC
CGCCACCACCACAGCCGCTTTTGCCACCACTCTGCATGCTGGCGCGCGCG
CTGTCGTTACCGCTGCTGCCACCTCCGCCAGTGCGCCGCACATCTCGCCG
TGCTGCGAGGGCTGCGGCGCTTCGCACGCTAGAACGAATGGCTTCGGCAA
CTTTGGCTCCGCGACGTGCGCGCAGAAGTATCGCTAAGGTCACAAGTCGG
TTGCTAACGCCGCTGCCGCGCCTGGCGCTCCCTGACGACCGACGTTCGCC
AGGCGCCCCGTGCCGGGTGCGCCTTGCGATTGGTGTTATAAGCTGCACCA
TAAGAGCTACGGGTCGGGCAAGTTTTGTTCCGTGCATTGTGCCAGAAGAG
TGGCCGCTACTAGGAAGTGGGAGAAGAGTCTCACAGAAAAGTCCGAGAGA
CTAGACGCTGTTCGCTCGGCTATGTTGGCTACGTCACCGCCTTCGCAACC
TTGTGCATTGCCAATCTGGACGGGTAAGAGACGTTGTGTCGTAAAAATTG
AGCTTGAACAGCTGCATACCTCAGATTCATCGTCTTCTTTTTACGTCACG
CAGCCGTATAGTCTGCCTCAGCTGCTTAATTTACCGACCAACACTCCGAC
TCCGCCTGTGTGTGCGCCGCCCCAGTTGCCGAAACCCTTCTTAACGCCCG
CCACCATGTCGCCACATACCACCGCCTCACCACCCGTGCAACAGCACGCA
AGCTATTTGCCGCCGCAACCACCACCACTGGCTAACCACGCCATGCACTA
G
back to top

Coding sequence (CDS) from alignment at tig00000170_pilon:270849..272649+

>Ggra9882.t1 ID=Ggra9882.t1|Name=Ggra9882.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1197bp|location=Sequence derived from alignment at tig00000170_pilon:270849..272649+ (Gracilaria gracilis GNS1m male)
ATGCAGGAGATCTTGGATATATTGTTCTTTTGTGATCTTTCTTCTGGTCG
TAAGAATCGGGATAGTCTTTTAGAGATTGGCccTTTgccgccgccgccgt
cgccctcgccaccgccgccgtcgccgccgacgccgccgccACCGTCGATT
CCGCCGCACGCGCAACCACCGCCGCCGCACGCTCCGCCACTGCCGCACCA
CGCGCCGCCACCGCAGCAGCACGCACCGCCACCACCGCAGCACGCGCCGC
CATCGACGAAGCACGCGCCGCCACCGCCGCCGCACGCTCCGCCACTGCCG
CAGCACGCGCCGCCACCACCGCAGCACGCGCCGCCATCGCCGAAGCACGC
GCCGCCAACGCCGCCGCACGCGCCACCACTGCCACCGGGCAGAACGGCGC
CGCCTTCGCAGCCGTTGGGCGTGGCCGCTGCGCGGCTGCACCCGCTGTCT
TTCCCCACAGCCGCCGCTGCGCGCACCAATAGCGACTTGCTGCTTGCGCT
GTGCGcgtcgtcgtcgtcgctgtcgtcCCGGCCGCCGCCACCACCACAGC
CGCTTTTGCCACCACTCTGCATGCTGGCGCGCGCGCTGTCGTTACCGCTG
CTGCCACCTCCGCCAGTGCGCCGCACATCTCGCCGTGCTGCGAGGGCTGC
GGCGCTTCGCACGCTAGAACGAATGGCTTCGGCAACTTTGGCTCCGCGAC
GTGCGCGCAGAAGTATCGCTAAGGTCACAAGTCGGTTGCTAACGCCGCTG
CCGCGCCTGGCGCTCCCTGACGACCGACGTTCGCCAGGCGCCCCAGTGGC
CGCTACTAGGAAGTGGGAGAAGAGTCTCACAGAAAAGTCCGAGAGACTAG
ACGCTGTTCGCTCGGCTATGTTGGCTACGTCACCGCCTTCGCAACCTTGT
GCATTGCCAATCTGGACGGGTAAGAGACGTTGTGTCGTAAAAATTGAGCT
TGAACAGCTGCATACCTCAGATTCATCGTCTTCTTTTTACGTCACGCAGC
CGTATAGTCTGCCTCAGCTGCTTAATTTACCGACCAACACTCCGACTCCG
CCTGTGTGTGCGCCGCCCCAGTTGCCGAAACCCTTCTTAACGCCCGCCAC
CATGTCGCCACATACCACCGCCTCACCACCCGTGCAACAGCACGCAAGCT
ATTTGCCGCCGCAACCACCACCACTGGCTAACCACGCCATGCACTAG
back to top