Ggra9881.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9881.t1
Unique NameGgra9881.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length332
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000170_piloncontigtig00000170_pilon:200705..204137 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9881Ggra9881Gracilaria gracilis GNS1m malegenetig00000170_pilon 200705..204137 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9881.t1Ggra9881.t1Gracilaria gracilis GNS1m malepolypeptidetig00000170_pilon 200705..204137 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9881.t1.stop1Ggra9881.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000170_pilon 200705..200707 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9881.t1.CDS1Ggra9881.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000170_pilon 200705..201627 -
Ggra9881.t1.CDS2Ggra9881.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000170_pilon 201728..201746 -
Ggra9881.t1.CDS3Ggra9881.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000170_pilon 202213..202216 -
Ggra9881.t1.CDS4Ggra9881.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000170_pilon 202401..202430 -
Ggra9881.t1.CDS5Ggra9881.t1.CDS5Gracilaria gracilis GNS1m maleCDStig00000170_pilon 204118..204137 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9881.t1.exon1Ggra9881.t1.exon1Gracilaria gracilis GNS1m maleexontig00000170_pilon 200705..201627 -
Ggra9881.t1.exon2Ggra9881.t1.exon2Gracilaria gracilis GNS1m maleexontig00000170_pilon 201728..201746 -
Ggra9881.t1.exon3Ggra9881.t1.exon3Gracilaria gracilis GNS1m maleexontig00000170_pilon 202213..202216 -
Ggra9881.t1.exon4Ggra9881.t1.exon4Gracilaria gracilis GNS1m maleexontig00000170_pilon 202401..202430 -
Ggra9881.t1.exon5Ggra9881.t1.exon5Gracilaria gracilis GNS1m maleexontig00000170_pilon 204118..204137 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9881.t1.intron1Ggra9881.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000170_pilon 201628..201727 -
Ggra9881.t1.intron2Ggra9881.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000170_pilon 201747..202212 -
Ggra9881.t1.intron3Ggra9881.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000170_pilon 202217..202400 -
Ggra9881.t1.intron4Ggra9881.t1.intron4Gracilaria gracilis GNS1m maleintrontig00000170_pilon 202431..204117 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9881.t1.start1Ggra9881.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000170_pilon 204135..204137 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9881.t1 ID=Ggra9881.t1|Name=Ggra9881.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=332bp
MRCSEKLNKVIDARSRAFTYIHNYHYYNFNADCTINQSLGDGQNYHIISS
QPQPTHRPPHGTHVNPIAPVPPVQPPLRSSHAPPPPQRHYAPHQPLPPPP
LSALPSVRHLPRISPLTDRPSKRSRLSARTMPSSTSSGSDAVDEPFSLMA
TRSYGSTSADVDESSLNDWEAVVEMYLHGTGAPDGVPLREICKGDGRRVH
DRKLLEKRRTIGKTYEVLGAPRFEAAIGYRWENGLRRKQKMYNVISRCRI
VNAMRKSGEAIPDDFGTLTALIDTRLREKELAKEERDAKRNAEQARLNAI
AGTTRIAVMPGATARENAPPSLALVRRADAS*
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spliced messenger RNA

>Ggra9881.t1 ID=Ggra9881.t1|Name=Ggra9881.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=996bp|location=Sequence derived from alignment at tig00000170_pilon:200705..204137- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGTGTTCAGAGAAACTGAACAAAGTGATCGACGCGCGGTCGCGGGC
ATTCACCTACATCCACAACTACCATTATTACAACTTCAACGCCGATTGCA
CCATCAATCAATCGTTAGGCGACGGACAGAACTACCACATCATCTCATCG
CAGCCACAGCCGACGCATCGGCCGCCGCACGGCACGCATGTGAACCCCAT
CGCGCCGGTACCACCCGTACAGCCGCCGCTGCGCTCCTCGCACGCGCCGC
CGCCGCCGCAGCGTCACTACGCGCCGCATCAACCGTTGCCACCGCCGCCT
CTATCGGCGCTACCGTCCGTACGTCACCTGCCGCGAATCTCTCCGCTCAC
CGATCGGCCGAGCAAGCGCAGCCGACTGTCGGCGCGCACCATGCCGTCGT
CCACGTCCAGCGGGTCGGATGCGGTGGACGAGCCGTTCTCGCTGATGGCG
ACACGTAGCTATGGGTCGACGTCGGCTGACGTGGATGAGTCGTCTCTCAA
TGACTGGGAGGCAGTGGTGGAGATGTACTTGCACGGCACGGGTGCGCCGG
ATGGCGTGCCCTTACGCGAGATTTGTAAGGGCGACGGTCGTCGCGTGCAC
GACCGAAAGCTGTTGGAGAAGCGACGTACGATCGGAAAGACGTATGAAGT
GCTGGGCGCGCCCCGCTTCGAGGCGGCTATCGGCTACCGTTGGGAGAACG
GGCTGCGACGCAAGCAGAAGATGTACAACGTAATCAGTCGATGCCGCATC
GTGAACGCGATGCGAAAGAGCGGTGAGGCCATCCCGGACGATTTTGGAAC
TCTGACGGCGTTGATAGACACGCGACTGAGGGAGAAGGAACTGGCGAAGG
AGGAGCGCGACGCGAAGCGCAACGCGGAGCAGGCGAGACTGAACGCGATT
GCGGGCACGACGCGCATCGCGGTGATGCCGGGCGCCACTGCGCGCGAGAA
CGCACCGCCGTCGCTTGCGCTGGTGCGACGCGCCGACGCGTCGTGA
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protein sequence of Ggra9881.t1

>Ggra9881.t1 ID=Ggra9881.t1|Name=Ggra9881.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=332bp
MRCSEKLNKVIDARSRAFTYIHNYHYYNFNADCTINQSLGDGQNYHIISS
QPQPTHRPPHGTHVNPIAPVPPVQPPLRSSHAPPPPQRHYAPHQPLPPPP
LSALPSVRHLPRISPLTDRPSKRSRLSARTMPSSTSSGSDAVDEPFSLMA
TRSYGSTSADVDESSLNDWEAVVEMYLHGTGAPDGVPLREICKGDGRRVH
DRKLLEKRRTIGKTYEVLGAPRFEAAIGYRWENGLRRKQKMYNVISRCRI
VNAMRKSGEAIPDDFGTLTALIDTRLREKELAKEERDAKRNAEQARLNAI
AGTTRIAVMPGATARENAPPSLALVRRADAS*
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mRNA from alignment at tig00000170_pilon:200705..204137-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9881.t1 ID=Ggra9881.t1|Name=Ggra9881.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=3433bp|location=Sequence derived from alignment at tig00000170_pilon:200705..204137- (Gracilaria gracilis GNS1m male)
ATGCGGTGTTCAGAGAAACTGTACGTTCGAGAAAGATTCTCAAACGTCTT
TTGATGTAAAAACCTGTAAAAAGGAGCTTGTTGCAGAAGCGATAGCAAAT
CAAGGAGGTCCATGTTATCAGAAATTGTCGCAATCGTTAGTCGGGAGATT
GGTTTGCTTGTAATATGGAGCATAGTAGTGTTATTTATACTTTCCACTAT
TTTTTATGTACTAGTTGGCGTCTTTTTGGTTGGCAAGACATGACCTTTTT
GATCTTTAAATTGTGTGAATTGTGACGGGTTCCCGGGTTTTGTCTTGGAT
TGTAAGTGTCTCTGGATTTGAATGTGGGTGTTAGTGTTTTTGAGTCGTTT
GTTAGTAGATATGGGGGTTTGTGGACGCAATAGGTTTTGAACAGTGGCGA
TGGAGCGCCCTAAAAGTTTCTGTGGTATGCTCAATCGTTAAAGTATGCCA
AGCTGAATCTAGATTTACTTGTATATGTGGTCGGGGGCATCCAAACCTTT
TTTATTTTTGCGCGCAATTACACTTAATCTTATTGCCGCTTTGGTAAGAG
GAAAAGTCCTCATGAGCTCTTTTTTTCGCGCAAAGTGTCATTTGGTTTTT
GTCTGCAGAGCAAAAGATTTCAGGGTCTTTGCGTCATCACTTTTGTCGCA
AGAAAATGTAGATTAGAAGGTCTACAGGCTGAAGATGACGGTTTGTGCAG
AATTCGACATTGATCTAGTTTGCTTTGAAAAGACGAATTAAAAACGTCCC
GACGAAATAGTACGAGAACAGTTACGCCCGTTTTGGTGGACAAATGTTGC
GCTTGGGTTTGGGAAGCTTTAGTACGAAGCGGACATTGCGTTTTGTCAAT
TGAAACAATAAAGCAAGCTCATGTTGTATACAAAAAGGCTTCAAATCCTT
CACACCTATTGGCCATAATTGAGAAATTGTTTTCCAATAACCAGCTGCTA
CTCGTTGCTTTTGTGTTTACTGATGTAGACATAATTTTCGAAACACATGG
CAACCTGGTAACGAGTCGTTTCATTCGTGAACCAATCAGGTTGGCGTCTT
ACGTCTATTTCACTAGACAAAAAGTTTTAGGTTCAAAAGGGTTAAAATAG
GAAGCAAAACGCATTTATCTTTGAAAAGCAAACGAAATTGCTACACAGTA
GACGTGGTCGTATACGTTGCTCCAAATGCGTCGCTTCTGTCCGTTTCGCT
TGTGTTTTCAAAAGCGTTGTGTTGGACACGTATTGTGCTTGAAAGTGCAG
TTTTGTGATAGTTTTGTAATAAATGATGTGAGCTGAATGTGTAATGCATC
GCTGAGAGGTAAGAACATTTACAGAGCAGCAGCGAATGTATGGCTCCGTT
TTTTGGAACTTTCTTTAGGGGTGGTTTGGGAGGGGTGTGTGGTGAGAAGT
GGAAGGGGGCGAGGAGCGCGTGGGCGTGACACGCGGCGGGGCGCGACTGG
GAAAGGCAGCGCTTTACGGTGGTAGCTGAAGTGAATGCACCTACGTGTAC
ACGCGTGTTCACGTTCCGTAAAGCGATGCTGGGCTCCTGCGCTGCGACTG
CGTTGCGCTTGCGGGCGCGCCCATTGGGCGGCGGTGGAGTTCGACGACAA
CGCGCAGTGGAGCGGTGTTGCATGTGTTGGTGTGTGCTCGCGGTGTGTGT
GTGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGGC
TGCGCAGGAACAAAGTGATCGACGCGCGGTCGCGGGCGTAAGTTACTGTA
CGTCAGCGACGGCACACGGCTGCCAACCGCACGTGAGCCGCCGCGCAACA
CGCCGCGCTGACAAAGGCGCGTCGCCGACGGCGCGCGCGCGTCTGCCACG
CACGTGCTCGTACAGCCAACTTGGGAGCGTAGATACTTCACGCTGACACG
CAGCTCCTCTTCCAAGCGCAGATTCGTACGTACGCACCATCGGGCCTACA
CCACGCCGCGCACCTCGCGCTACTACCGCCTCGCGTCGCCCGCGTCGCCG
CCGTCGTCGTCGCCTTCGTCGTCTTAGTAGTAGTAGCCGCTACCGCTACC
GCTACCGCTACCGCCGCGTGCGTCCCCGTCCCGCTTCGCGCGCGTCTTCG
CGTACGTCTCGCCACCCCGTCGCGTTGTGCGCGTCCGCCGGCGCCGTCTA
CGAGTAGCTACGCTGGCGTATGAACGCACCGCCACCCCGTTCATCGGCGC
TCGGCGCGCGTGCGCGCTCGCCGCCGCGCTCGTACGCCGCGGCCGCCGCC
GCGCCCTACCCCTTCTCGCACCATGTGCATGAGCCGTCTGCGCCGCATGC
GCAACCGCCACCGCCGCAACAACATGCGCCGCCGCAGCAACACGCGCCGC
CGCAACAGCAGCATCATCAGCTGCATCTGCCCGCTGTGCAGACCTACATC
CACAACTACCGTACGTCGTAGCGCGCTCTTTCCACTCGGCCCCTTGTGCT
GCGTGGCCGTTGTTGTCTCGCTGTCTAACCTCAGCTCGTGTTGTTTTGTT
TCGCATGCAGATTATTACAACTTCAACGCCGATTGCACCATCAATCAATC
GTTAGGCGACGGACAGAACTACCACATCATCTCATCGCAGCCACAGCCGA
CGCATCGGCCGCCGCACGGCACGCATGTGAACCCCATCGCGCCGGTACCA
CCCGTACAGCCGCCGCTGCGCTCCTCGCACGCGCCGCCGCCGCCGCAGCG
TCACTACGCGCCGCATCAACCGTTGCCACCGCCGCCTCTATCGGCGCTAC
CGTCCGTACGTCACCTGCCGCGAATCTCTCCGCTCACCGATCGGCCGAGC
AAGCGCAGCCGACTGTCGGCGCGCACCATGCCGTCGTCCACGTCCAGCGG
GTCGGATGCGGTGGACGAGCCGTTCTCGCTGATGGCGACACGTAGCTATG
GGTCGACGTCGGCTGACGTGGATGAGTCGTCTCTCAATGACTGGGAGGCA
GTGGTGGAGATGTACTTGCACGGCACGGGTGCGCCGGATGGCGTGCCCTT
ACGCGAGATTTGTAAGGGCGACGGTCGTCGCGTGCACGACCGAAAGCTGT
TGGAGAAGCGACGTACGATCGGAAAGACGTATGAAGTGCTGGGCGCGCCC
CGCTTCGAGGCGGCTATCGGCTACCGTTGGGAGAACGGGCTGCGACGCAA
GCAGAAGATGTACAACGTAATCAGTCGATGCCGCATCGTGAACGCGATGC
GAAAGAGCGGTGAGGCCATCCCGGACGATTTTGGAACTCTGACGGCGTTG
ATAGACACGCGACTGAGGGAGAAGGAACTGGCGAAGGAGGAGCGCGACGC
GAAGCGCAACGCGGAGCAGGCGAGACTGAACGCGATTGCGGGCACGACGC
GCATCGCGGTGATGCCGGGCGCCACTGCGCGCGAGAACGCACCGCCGTCG
CTTGCGCTGGTGCGACGCGCCGACGCGTCGTGA
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Coding sequence (CDS) from alignment at tig00000170_pilon:200705..204137-

>Ggra9881.t1 ID=Ggra9881.t1|Name=Ggra9881.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=996bp|location=Sequence derived from alignment at tig00000170_pilon:200705..204137- (Gracilaria gracilis GNS1m male)
ATGCGGTGTTCAGAGAAACTGAACAAAGTGATCGACGCGCGGTCGCGGGC
ATTCACCTACATCCACAACTACCATTATTACAACTTCAACGCCGATTGCA
CCATCAATCAATCGTTAGGCGACGGACAGAACTACCACATCATCTCATCG
CAGCCACAGCCGACGCATCGGCCGCCGCACGGCACGCATGTGAACCCCAT
CGCGCCGGTACCACCCGTACAGCCGCCGCTGCGCTCCTCGCACGCGCCGC
CGCCGCCGCAGCGTCACTACGCGCCGCATCAACCGTTGCCACCGCCGCCT
CTATCGGCGCTACCGTCCGTACGTCACCTGCCGCGAATCTCTCCGCTCAC
CGATCGGCCGAGCAAGCGCAGCCGACTGTCGGCGCGCACCATGCCGTCGT
CCACGTCCAGCGGGTCGGATGCGGTGGACGAGCCGTTCTCGCTGATGGCG
ACACGTAGCTATGGGTCGACGTCGGCTGACGTGGATGAGTCGTCTCTCAA
TGACTGGGAGGCAGTGGTGGAGATGTACTTGCACGGCACGGGTGCGCCGG
ATGGCGTGCCCTTACGCGAGATTTGTAAGGGCGACGGTCGTCGCGTGCAC
GACCGAAAGCTGTTGGAGAAGCGACGTACGATCGGAAAGACGTATGAAGT
GCTGGGCGCGCCCCGCTTCGAGGCGGCTATCGGCTACCGTTGGGAGAACG
GGCTGCGACGCAAGCAGAAGATGTACAACGTAATCAGTCGATGCCGCATC
GTGAACGCGATGCGAAAGAGCGGTGAGGCCATCCCGGACGATTTTGGAAC
TCTGACGGCGTTGATAGACACGCGACTGAGGGAGAAGGAACTGGCGAAGG
AGGAGCGCGACGCGAAGCGCAACGCGGAGCAGGCGAGACTGAACGCGATT
GCGGGCACGACGCGCATCGCGGTGATGCCGGGCGCCACTGCGCGCGAGAA
CGCACCGCCGTCGCTTGCGCTGGTGCGACGCGCCGACGCGTCGTGA
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