Ggra9879.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9879.t1
Unique Name	Ggra9879.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	676

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000170_pilon	contig	tig00000170_pilon:195793..197820 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9879	Ggra9879	Gracilaria gracilis GNS1m male	gene	tig00000170_pilon 195793..197820 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9879.t1.stop1	Ggra9879.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000170_pilon 195793..195795 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9879.t1.CDS1	Ggra9879.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000170_pilon 195793..197820 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9879.t1.exon1	Ggra9879.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000170_pilon 195793..197820 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9879.t1.start1	Ggra9879.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000170_pilon 197818..197820 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9879.t1	Ggra9879.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000170_pilon 195793..197820 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000170_pilon:195793..197820-
coding sequence from alignment at tig00000170_pilon:195793..197820-

mRNA sequence

>Ggra9879.t1 ID=Ggra9879.t1|Name=Ggra9879.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=676bp
MTHKNAAVHASRPGADLDRYAPNSSLPLLVRMPNGEDHQVDMPSNALVKD
LKTSIANLPWQPSGNDPQQQSLELEFGGETLNENEPLSSYNIPEAYDHAD
GFLKTISDSGYLDPDKKVEALDKACAVVRGISRGEKDMQRLISAVFDDVN
DDTPASPSAQPSLSAMKRSRISRIPSLNLGALGSFGADGKSTTKLFSPSA
PPTPRQLMRTLSSLRPDLYDTEAADKATSSLSLGNLANLANNVPTRVSEP
PIHGSGELKRGNTWFHDIMTSINTSLRDPRKGGAIDHDDRDEVEGDSEGE
DDVAADEGNTSNDLNASRSTAPRGALGLGDMMKQGNSSLADNNRNNSSAT
AMKDEKPIAGSSSMTEGNTMTATRTALDDRSISKPSFEASSEAATPQKID
SKATESQETGRSTSEASNANLQTPQKQTTPSSASKTVVPTHPIANQDKQV
IGLTPERQAPGEEVKQPKKRGRKRKNPHLTEEQRRLQRQAQNRESAKLSR
IRRKHMTMEYEKRVNTLEGENENLRDTISGLEDRLQMLQNLLTITVQRRS
IPQVHPSMIPQSTAALGQGPQSRLNTAINPHVPMAAQPGISSQAGLVSRA
LNAQALLSSQNVMARAGAASHAGMMHAQNQLNTQRPLNTNDALVGRTQAL
SGSRPLGPNAPSQSNPLTNFRYKNF*

spliced messenger RNA

>Ggra9879.t1 ID=Ggra9879.t1|Name=Ggra9879.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2028bp|location=Sequence derived from alignment at tig00000170_pilon:195793..197820- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCACAAGAACGCCGCGGTTCATGCGTCGCGTCCCGGCGCAGACCT
CGATCGCTATGCGCCCAACTCCTCTCTTCCTCTCCTTGTGCGTATGCCCA
ACGGCGAGGACCATCAAGTCGATATGCCCTCAAATGCCCTAGTCAAAGAT
CTCAAGACTTCCATTGCTAATTTGCCATGGCAACCCTCCGGCAATGACCC
CCAACAACAGTCGCTCGAGCTCGAATTTGGTGGCGAGACGCTCAATGAAA
ACGAACCCCTCAGCAGCTACAACATCCCGGAAGCGTATGACCATGCCGAT
GGTTTCTTGAAAACCATCTCGGATAGCGGTTACCTCGATCCCGATAAGAA
AGTGGAAGCGCTTGATAAGGCGTGCGCTGTTGTTCGCGGTATCTCGCGCG
GAGAGAAAGACATGCAGCGTCTCATAAGCGCCGTGTTCGACGACGTTAAC
GACGACACGCCAGCCTCCCCGTCCGCGCAACCTTCACTAAGCGCCATGAA
ACGTTCCCGTATCAGCCGCATACCATCGCTGAACCTTGGAGCCCTCGGTT
CATTTGGCGCTGATGGAAAGTCAACCACTAAGCTATTTTCTCCTTCAGCG
CCACCTACGCCTCGACAGCTCATGCGAACGCTCAGCTCGCTCCGTCCCGA
CTTATACGACACGGAGGCTGCTGACAAGGCCACCAGCTCCTTATCTTTGG
GTAATCTCGCAAACTTGGCGAACAATGTACCCACGCGTGTTAGTGAGCCC
CCAATTCACGGAAGTGGGGAACTGAAGAGGGGGAACACGTGGTTTCATGA
CATTATGACTTCAATCAATACCTCTCTGCGTGATCCTAGAAAAGGAGGTG
CCATTGATCATGACGACCGCGATGAAGTAGAAGGTGATAGTGAGGGCGAG
GATGACGTTGCAGCAGATGAAGGAAATACCTCGAATGACCTCAATGCATC
TCGTTCCACTGCTCCTCGAGGAGCCCTTGGCCTTGGGGATATGATGAAAC
AGGGCAATTCGTCATTAGCGGATAATAATAGAAACAATTCGTCAGCCACT
GCTATGAAGGACGAGAAGCCCATCGCAGGCTCGTCTTCGATGACAGAAGG
GAACACAATGACTGCTACCAGGACCGCCTTAGACGACCGGTCGATCTCAA
AGCCAAGCTTTGAGGCAAGTTCAGAAGCAGCAACTCCACAAAAAATCGAC
TCCAAGGCCACGGAATCACAGGAGACAGGGCGAAGTACAAGTGAAGCATC
GAACGCGAACCTTCAAACGCCTCAGAAACAAACGACCCCGTCTAGCGCGT
CGAAAACTGTCGTGCCCACTCACCCAATTGCGAACCAAGACAAGCAGGTC
ATTGGCCTCACCCCAGAGCGTCAAGCCCCAGGGGAGGAGGTGAAGCAGCC
AAAGAAACGGGGCAGGAAACGGAAGAACCCTCATCTGACGGAGGAGCAAA
GAAGATTACAAAGGCAAGCGCAGAACCGAGAAAGCGCCAAACTGTCTCGA
ATTCGTCGAAAGCACATGACAATGGAATACGAAAAGAGAGTGAACACTCT
CGAAGGAGAGAATGAAAACCTCCGCGACACTATTAGCGGACTGGAAGATC
GTCTACAAATGCTGCAGAACTTGCTCACGATAACAGTGCAAAGGAGAAGC
ATCCCGCAAGTTCACCCGTCAATGATTCCGCAGTCCACCGCCGCTCTTGG
CCAAGGGCCGCAGAGCCGACTCAACACGGCAATTAATCCTCACGTGCCGA
TGGCCGCCCAACCGGGCATTAGCTCACAAGCAGGACTGGTTTCGCGGGCC
CTCAACGCACAGGCTCTATTAAGCAGTCAGAATGTAATGGCTCGTGCCGG
GGCAGCGTCACATGCTGGTATGATGCACGCACAGAACCAGCTCAACACAC
AACGTCCCCTCAACACAAACGACGCTTTGGTAGGTCGCACGCAAGCCCTT
TCAGGTTCAAGGCCTTTAGGACCAAATGCGCCGTCGCAATCAAACCCCTT
GACAAACTTTCGGTACAAAAACTTCTGA

protein sequence of Ggra9879.t1

>Ggra9879.t1 ID=Ggra9879.t1|Name=Ggra9879.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=676bp
MTHKNAAVHASRPGADLDRYAPNSSLPLLVRMPNGEDHQVDMPSNALVKD
LKTSIANLPWQPSGNDPQQQSLELEFGGETLNENEPLSSYNIPEAYDHAD
GFLKTISDSGYLDPDKKVEALDKACAVVRGISRGEKDMQRLISAVFDDVN
DDTPASPSAQPSLSAMKRSRISRIPSLNLGALGSFGADGKSTTKLFSPSA
PPTPRQLMRTLSSLRPDLYDTEAADKATSSLSLGNLANLANNVPTRVSEP
PIHGSGELKRGNTWFHDIMTSINTSLRDPRKGGAIDHDDRDEVEGDSEGE
DDVAADEGNTSNDLNASRSTAPRGALGLGDMMKQGNSSLADNNRNNSSAT
AMKDEKPIAGSSSMTEGNTMTATRTALDDRSISKPSFEASSEAATPQKID
SKATESQETGRSTSEASNANLQTPQKQTTPSSASKTVVPTHPIANQDKQV
IGLTPERQAPGEEVKQPKKRGRKRKNPHLTEEQRRLQRQAQNRESAKLSR
IRRKHMTMEYEKRVNTLEGENENLRDTISGLEDRLQMLQNLLTITVQRRS
IPQVHPSMIPQSTAALGQGPQSRLNTAINPHVPMAAQPGISSQAGLVSRA
LNAQALLSSQNVMARAGAASHAGMMHAQNQLNTQRPLNTNDALVGRTQAL
SGSRPLGPNAPSQSNPLTNFRYKNF*

mRNA from alignment at tig00000170_pilon:195793..197820-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9879.t1 ID=Ggra9879.t1|Name=Ggra9879.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2028bp|location=Sequence derived from alignment at tig00000170_pilon:195793..197820- (Gracilaria gracilis GNS1m male)
ATGACTCACAAGAACGCCGCGGTTCATGCGTCGCGTCCCGGCGCAGACCT
CGATCGCTATGCGCCCAACTCCTCTCTTCCTCTCCTTGTGCGTATGCCCA
ACGGCGAGGACCATCAAGTCGATATGCCCTCAAATGCCCTAGTCAAAGAT
CTCAAGACTTCCATTGCTAATTTGCCATGGCAACCCTCCGGCAATGACCC
CCAACAACAGTCGCTCGAGCTCGAATTTGGTGGCGAGACGCTCAATGAAA
ACGAACCCCTCAGCAGCTACAACATCCCGGAAGCGTATGACCATGCCGAT
GGTTTCTTGAAAACCATCTCGGATAGCGGTTACCTCGATCCCGATAAGAA
AGTGGAAGCGCTTGATAAGGCGTGCGCTGTTGTTCGCGGTATCTCGCGCG
GAGAGAAAGACATGCAGCGTCTCATAAGCGCCGTGTTCGACGACGTTAAC
GACGACACGCCAGCCTCCCCGTCCGCGCAACCTTCACTAAGCGCCATGAA
ACGTTCCCGTATCAGCCGCATACCATCGCTGAACCTTGGAGCCCTCGGTT
CATTTGGCGCTGATGGAAAGTCAACCACTAAGCTATTTTCTCCTTCAGCG
CCACCTACGCCTCGACAGCTCATGCGAACGCTCAGCTCGCTCCGTCCCGA
CTTATACGACACGGAGGCTGCTGACAAGGCCACCAGCTCCTTATCTTTGG
GTAATCTCGCAAACTTGGCGAACAATGTACCCACGCGTGTTAGTGAGCCC
CCAATTCACGGAAGTGGGGAACTGAAGAGGGGGAACACGTGGTTTCATGA
CATTATGACTTCAATCAATACCTCTCTGCGTGATCCTAGAAAAGGAGGTG
CCATTGATCATGACGACCGCGATGAAGTAGAAGGTGATAGTGAGGGCGAG
GATGACGTTGCAGCAGATGAAGGAAATACCTCGAATGACCTCAATGCATC
TCGTTCCACTGCTCCTCGAGGAGCCCTTGGCCTTGGGGATATGATGAAAC
AGGGCAATTCGTCATTAGCGGATAATAATAGAAACAATTCGTCAGCCACT
GCTATGAAGGACGAGAAGCCCATCGCAGGCTCGTCTTCGATGACAGAAGG
GAACACAATGACTGCTACCAGGACCGCCTTAGACGACCGGTCGATCTCAA
AGCCAAGCTTTGAGGCAAGTTCAGAAGCAGCAACTCCACAAAAAATCGAC
TCCAAGGCCACGGAATCACAGGAGACAGGGCGAAGTACAAGTGAAGCATC
GAACGCGAACCTTCAAACGCCTCAGAAACAAACGACCCCGTCTAGCGCGT
CGAAAACTGTCGTGCCCACTCACCCAATTGCGAACCAAGACAAGCAGGTC
ATTGGCCTCACCCCAGAGCGTCAAGCCCCAGGGGAGGAGGTGAAGCAGCC
AAAGAAACGGGGCAGGAAACGGAAGAACCCTCATCTGACGGAGGAGCAAA
GAAGATTACAAAGGCAAGCGCAGAACCGAGAAAGCGCCAAACTGTCTCGA
ATTCGTCGAAAGCACATGACAATGGAATACGAAAAGAGAGTGAACACTCT
CGAAGGAGAGAATGAAAACCTCCGCGACACTATTAGCGGACTGGAAGATC
GTCTACAAATGCTGCAGAACTTGCTCACGATAACAGTGCAAAGGAGAAGC
ATCCCGCAAGTTCACCCGTCAATGATTCCGCAGTCCACCGCCGCTCTTGG
CCAAGGGCCGCAGAGCCGACTCAACACGGCAATTAATCCTCACGTGCCGA
TGGCCGCCCAACCGGGCATTAGCTCACAAGCAGGACTGGTTTCGCGGGCC
CTCAACGCACAGGCTCTATTAAGCAGTCAGAATGTAATGGCTCGTGCCGG
GGCAGCGTCACATGCTGGTATGATGCACGCACAGAACCAGCTCAACACAC
AACGTCCCCTCAACACAAACGACGCTTTGGTAGGTCGCACGCAAGCCCTT
TCAGGTTCAAGGCCTTTAGGACCAAATGCGCCGTCGCAATCAAACCCCTT
GACAAACTTTCGGTACAAAAACTTCTGA

Coding sequence (CDS) from alignment at tig00000170_pilon:195793..197820-

>Ggra9879.t1 ID=Ggra9879.t1|Name=Ggra9879.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2028bp|location=Sequence derived from alignment at tig00000170_pilon:195793..197820- (Gracilaria gracilis GNS1m male)
ATGACTCACAAGAACGCCGCGGTTCATGCGTCGCGTCCCGGCGCAGACCT
CGATCGCTATGCGCCCAACTCCTCTCTTCCTCTCCTTGTGCGTATGCCCA
ACGGCGAGGACCATCAAGTCGATATGCCCTCAAATGCCCTAGTCAAAGAT
CTCAAGACTTCCATTGCTAATTTGCCATGGCAACCCTCCGGCAATGACCC
CCAACAACAGTCGCTCGAGCTCGAATTTGGTGGCGAGACGCTCAATGAAA
ACGAACCCCTCAGCAGCTACAACATCCCGGAAGCGTATGACCATGCCGAT
GGTTTCTTGAAAACCATCTCGGATAGCGGTTACCTCGATCCCGATAAGAA
AGTGGAAGCGCTTGATAAGGCGTGCGCTGTTGTTCGCGGTATCTCGCGCG
GAGAGAAAGACATGCAGCGTCTCATAAGCGCCGTGTTCGACGACGTTAAC
GACGACACGCCAGCCTCCCCGTCCGCGCAACCTTCACTAAGCGCCATGAA
ACGTTCCCGTATCAGCCGCATACCATCGCTGAACCTTGGAGCCCTCGGTT
CATTTGGCGCTGATGGAAAGTCAACCACTAAGCTATTTTCTCCTTCAGCG
CCACCTACGCCTCGACAGCTCATGCGAACGCTCAGCTCGCTCCGTCCCGA
CTTATACGACACGGAGGCTGCTGACAAGGCCACCAGCTCCTTATCTTTGG
GTAATCTCGCAAACTTGGCGAACAATGTACCCACGCGTGTTAGTGAGCCC
CCAATTCACGGAAGTGGGGAACTGAAGAGGGGGAACACGTGGTTTCATGA
CATTATGACTTCAATCAATACCTCTCTGCGTGATCCTAGAAAAGGAGGTG
CCATTGATCATGACGACCGCGATGAAGTAGAAGGTGATAGTGAGGGCGAG
GATGACGTTGCAGCAGATGAAGGAAATACCTCGAATGACCTCAATGCATC
TCGTTCCACTGCTCCTCGAGGAGCCCTTGGCCTTGGGGATATGATGAAAC
AGGGCAATTCGTCATTAGCGGATAATAATAGAAACAATTCGTCAGCCACT
GCTATGAAGGACGAGAAGCCCATCGCAGGCTCGTCTTCGATGACAGAAGG
GAACACAATGACTGCTACCAGGACCGCCTTAGACGACCGGTCGATCTCAA
AGCCAAGCTTTGAGGCAAGTTCAGAAGCAGCAACTCCACAAAAAATCGAC
TCCAAGGCCACGGAATCACAGGAGACAGGGCGAAGTACAAGTGAAGCATC
GAACGCGAACCTTCAAACGCCTCAGAAACAAACGACCCCGTCTAGCGCGT
CGAAAACTGTCGTGCCCACTCACCCAATTGCGAACCAAGACAAGCAGGTC
ATTGGCCTCACCCCAGAGCGTCAAGCCCCAGGGGAGGAGGTGAAGCAGCC
AAAGAAACGGGGCAGGAAACGGAAGAACCCTCATCTGACGGAGGAGCAAA
GAAGATTACAAAGGCAAGCGCAGAACCGAGAAAGCGCCAAACTGTCTCGA
ATTCGTCGAAAGCACATGACAATGGAATACGAAAAGAGAGTGAACACTCT
CGAAGGAGAGAATGAAAACCTCCGCGACACTATTAGCGGACTGGAAGATC
GTCTACAAATGCTGCAGAACTTGCTCACGATAACAGTGCAAAGGAGAAGC
ATCCCGCAAGTTCACCCGTCAATGATTCCGCAGTCCACCGCCGCTCTTGG
CCAAGGGCCGCAGAGCCGACTCAACACGGCAATTAATCCTCACGTGCCGA
TGGCCGCCCAACCGGGCATTAGCTCACAAGCAGGACTGGTTTCGCGGGCC
CTCAACGCACAGGCTCTATTAAGCAGTCAGAATGTAATGGCTCGTGCCGG
GGCAGCGTCACATGCTGGTATGATGCACGCACAGAACCAGCTCAACACAC
AACGTCCCCTCAACACAAACGACGCTTTGGTAGGTCGCACGCAAGCCCTT
TCAGGTTCAAGGCCTTTAGGACCAAATGCGCCGTCGCAATCAAACCCCTT
GACAAACTTTCGGTACAAAAACTTCTGA