Ggra9878.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9878.t1
Unique NameGgra9878.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length430
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000170_piloncontigtig00000170_pilon:194138..195427 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705069.1
PFAMsDnaJ,DnaJ_C,DnaJ_CXXCXGXG
Max annot lvl2759|Eukaryota
KEGG koko:K03686
GOsGO:0000122,GO:0001671,GO:0003674,GO:0003712,GO:0003714,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006355,GO:0006357,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008047,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0019219,GO:0019222,GO:0019899,GO:0030234,GO:0030544,GO:0031072,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032781,GO:0033554,GO:0035966,GO:0042221,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043462,GO:0043618,GO:0043620,GO:0044087,GO:0044093,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0048583,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0051117,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051336,GO:0051345,GO:0051716,GO:0060255,GO:0060589,GO:0060590,GO:0061077,GO:0065007,GO:0065009,GO:0070013,GO:0080090,GO:0080134,GO:0080135,GO:0090083,GO:0090084,GO:0097201,GO:0098772,GO:0140110,GO:1900034,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
Evalue8.54e-90
EggNOG OGsCOG0484@1|root,KOG0715@2759|Eukaryota
Descriptionheat shock protein binding
COG categoryO
BRITEko00000,ko03029,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9878Ggra9878Gracilaria gracilis GNS1m malegenetig00000170_pilon 194138..195427 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9878.t1.start1Ggra9878.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000170_pilon 194138..194140 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9878.t1.CDS1Ggra9878.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000170_pilon 194138..195427 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9878.t1.exon1Ggra9878.t1.exon1Gracilaria gracilis GNS1m maleexontig00000170_pilon 194138..195427 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9878.t1.stop1Ggra9878.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000170_pilon 195425..195427 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9878.t1Ggra9878.t1Gracilaria gracilis GNS1m malepolypeptidetig00000170_pilon 194138..195427 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9878.t1 ID=Ggra9878.t1|Name=Ggra9878.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=430bp
MASPLLYRAARVLSTSSLPQSAFRTRPALRALSGSASSASQRASADYYDL
LGVSRDASPSQIKKAYYRLAKDHHPDTSKGDRDTFAQVNHAYQTLSDKNK
RRIYDRFGEEGVRAADQGADPAAAAAGSAGQYATPDIDEVLREFGQFFNG
QQVQRPAVDDPAPGDDKHAVVTLSLREAAFGVSKQVRTHSVDTCHQCAGS
GKTSATRITRCPQCSGEGRVRTSAGMFQSVIITCHRCNGTGDLMRDPCST
CDGEGIVSAFKEASVSFPAGCDTGMVLRVPGAGATGVRRGPPGDLFIQVK
VKEDNYFHRSGKDLHVVAPISFAQAALGGTVEVRTLDGTESISVRQGTQP
DDTYVLHGRAMRGVNSPRRGNQVVHFKIVVPENLTTRQKQLITDLMEEDG
GKITKPEDCASQSLLQRFQRLLRRTISPR*
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spliced messenger RNA

>Ggra9878.t1 ID=Ggra9878.t1|Name=Ggra9878.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1290bp|location=Sequence derived from alignment at tig00000170_pilon:194138..195427+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
atggcgtcgccgctgcTTTATCGCGCCGCGCGCGTGCTCTCCACTTCGTC
CTTGCCGCAGTCAGCCTTCCGCACGCGCCCCGCGCTGCGTGCGCTCTCCG
GCTCCGCCAGCTCCGCTTCGCAGCGCGCCTCCGCCGATTACTACGACCTG
CTCGGCGTTTCGCGCGACGCCTCTCCGTCGCAGATCAAGAAGGCCTACTA
CCGCCTCGCCAAGGATCACCATCCGGACACTTCTAAAGGCGACCGTGACA
CTTTTGCTCAGGTCAATCACGCGTACCAGACGCTCTCTGATAAGAACAAG
CGCCGTATCTATGATCGCTTCGGAGAGGAGGGCGTCCGTgccgccgacca
gggcgccgatcccgccgccgccgccgccggctccgcTGGTCAGTACGCAA
CTCCCGATATAGATGAGGTTCTGCGCGAGTTCGGCCAGTTCTTCAACGGC
CAGCAGGTTCAACGCCCGGCCGTCGACGACCCGGCCCCCGGCGATGACAA
GCATGCCGTCGTCACCCTCTCGCTGCGAGAAGCCGCCTTCGGCGTCAGCA
AACAGGTTCGCACCCATTCCGTCGATACCTGCCATCAATGCGCTGGCTCT
GGCAAGACTTCCGCAACCCGCATCACGCGCTGCCCACAATGCTCTGGCGA
AGGACGCGTGCGCACTTCTGCAGGCATGTTCCAGAGCGTCATCATCACAT
GCCATCGCTGCAATGGCACCGGTGATCTAATGCGCGATCCTTGCTCGACG
TGCGACGGCGAAGGCATCGTCAGCGCCTTTAAGGAAGCCTCTGTATCGTT
CCCAGCGGGCTGCGACACTGGCATGGTGCTACGTGTTCCGGGCGCAGGGG
CTACAGGCGTCAGGAGGGGACCGCCGGGAGACCTTTTCATTCAGGTCAAA
GTTAAGGAGGACAACTACTTTCATCGCAGCGGAAAGGATCTACACGTCGT
TGCCCCTATCAGTTTTGCGCAGGCCGCCTTGGGCGGAACGGTCGAAGTGC
GAACCCTCGATGGCACAGAGAGTATATCTGTACGCCAGGGTACGCAACCC
GACGACACTTACGTACTACACGGTCGCGCAATGCGAGGCGTCAACAGCCC
GCGCCGTGGCAACCAAGTAGTCCACTTCAAGATCGTCGTGCCTGAGAATC
TCACCACTCGCCAAAAGCAACTCATTACAGACCTAATGGAAGAGGATGGC
GGGAAGATCACCAAGCCTGAGGATTGCGCTTCCCAGTCTTTACTTCAACG
TTTTCAACGCTTGTTGCGACGGACAATATCCCCGCGTTAA
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protein sequence of Ggra9878.t1

>Ggra9878.t1 ID=Ggra9878.t1|Name=Ggra9878.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=430bp
MASPLLYRAARVLSTSSLPQSAFRTRPALRALSGSASSASQRASADYYDL
LGVSRDASPSQIKKAYYRLAKDHHPDTSKGDRDTFAQVNHAYQTLSDKNK
RRIYDRFGEEGVRAADQGADPAAAAAGSAGQYATPDIDEVLREFGQFFNG
QQVQRPAVDDPAPGDDKHAVVTLSLREAAFGVSKQVRTHSVDTCHQCAGS
GKTSATRITRCPQCSGEGRVRTSAGMFQSVIITCHRCNGTGDLMRDPCST
CDGEGIVSAFKEASVSFPAGCDTGMVLRVPGAGATGVRRGPPGDLFIQVK
VKEDNYFHRSGKDLHVVAPISFAQAALGGTVEVRTLDGTESISVRQGTQP
DDTYVLHGRAMRGVNSPRRGNQVVHFKIVVPENLTTRQKQLITDLMEEDG
GKITKPEDCASQSLLQRFQRLLRRTISPR*
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mRNA from alignment at tig00000170_pilon:194138..195427+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9878.t1 ID=Ggra9878.t1|Name=Ggra9878.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1290bp|location=Sequence derived from alignment at tig00000170_pilon:194138..195427+ (Gracilaria gracilis GNS1m male)
atggcgtcgccgctgcTTTATCGCGCCGCGCGCGTGCTCTCCACTTCGTC
CTTGCCGCAGTCAGCCTTCCGCACGCGCCCCGCGCTGCGTGCGCTCTCCG
GCTCCGCCAGCTCCGCTTCGCAGCGCGCCTCCGCCGATTACTACGACCTG
CTCGGCGTTTCGCGCGACGCCTCTCCGTCGCAGATCAAGAAGGCCTACTA
CCGCCTCGCCAAGGATCACCATCCGGACACTTCTAAAGGCGACCGTGACA
CTTTTGCTCAGGTCAATCACGCGTACCAGACGCTCTCTGATAAGAACAAG
CGCCGTATCTATGATCGCTTCGGAGAGGAGGGCGTCCGTgccgccgacca
gggcgccgatcccgccgccgccgccgccggctccgcTGGTCAGTACGCAA
CTCCCGATATAGATGAGGTTCTGCGCGAGTTCGGCCAGTTCTTCAACGGC
CAGCAGGTTCAACGCCCGGCCGTCGACGACCCGGCCCCCGGCGATGACAA
GCATGCCGTCGTCACCCTCTCGCTGCGAGAAGCCGCCTTCGGCGTCAGCA
AACAGGTTCGCACCCATTCCGTCGATACCTGCCATCAATGCGCTGGCTCT
GGCAAGACTTCCGCAACCCGCATCACGCGCTGCCCACAATGCTCTGGCGA
AGGACGCGTGCGCACTTCTGCAGGCATGTTCCAGAGCGTCATCATCACAT
GCCATCGCTGCAATGGCACCGGTGATCTAATGCGCGATCCTTGCTCGACG
TGCGACGGCGAAGGCATCGTCAGCGCCTTTAAGGAAGCCTCTGTATCGTT
CCCAGCGGGCTGCGACACTGGCATGGTGCTACGTGTTCCGGGCGCAGGGG
CTACAGGCGTCAGGAGGGGACCGCCGGGAGACCTTTTCATTCAGGTCAAA
GTTAAGGAGGACAACTACTTTCATCGCAGCGGAAAGGATCTACACGTCGT
TGCCCCTATCAGTTTTGCGCAGGCCGCCTTGGGCGGAACGGTCGAAGTGC
GAACCCTCGATGGCACAGAGAGTATATCTGTACGCCAGGGTACGCAACCC
GACGACACTTACGTACTACACGGTCGCGCAATGCGAGGCGTCAACAGCCC
GCGCCGTGGCAACCAAGTAGTCCACTTCAAGATCGTCGTGCCTGAGAATC
TCACCACTCGCCAAAAGCAACTCATTACAGACCTAATGGAAGAGGATGGC
GGGAAGATCACCAAGCCTGAGGATTGCGCTTCCCAGTCTTTACTTCAACG
TTTTCAACGCTTGTTGCGACGGACAATATCCCCGCGTTAA
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Coding sequence (CDS) from alignment at tig00000170_pilon:194138..195427+

>Ggra9878.t1 ID=Ggra9878.t1|Name=Ggra9878.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1290bp|location=Sequence derived from alignment at tig00000170_pilon:194138..195427+ (Gracilaria gracilis GNS1m male)
atggcgtcgccgctgcTTTATCGCGCCGCGCGCGTGCTCTCCACTTCGTC
CTTGCCGCAGTCAGCCTTCCGCACGCGCCCCGCGCTGCGTGCGCTCTCCG
GCTCCGCCAGCTCCGCTTCGCAGCGCGCCTCCGCCGATTACTACGACCTG
CTCGGCGTTTCGCGCGACGCCTCTCCGTCGCAGATCAAGAAGGCCTACTA
CCGCCTCGCCAAGGATCACCATCCGGACACTTCTAAAGGCGACCGTGACA
CTTTTGCTCAGGTCAATCACGCGTACCAGACGCTCTCTGATAAGAACAAG
CGCCGTATCTATGATCGCTTCGGAGAGGAGGGCGTCCGTgccgccgacca
gggcgccgatcccgccgccgccgccgccggctccgcTGGTCAGTACGCAA
CTCCCGATATAGATGAGGTTCTGCGCGAGTTCGGCCAGTTCTTCAACGGC
CAGCAGGTTCAACGCCCGGCCGTCGACGACCCGGCCCCCGGCGATGACAA
GCATGCCGTCGTCACCCTCTCGCTGCGAGAAGCCGCCTTCGGCGTCAGCA
AACAGGTTCGCACCCATTCCGTCGATACCTGCCATCAATGCGCTGGCTCT
GGCAAGACTTCCGCAACCCGCATCACGCGCTGCCCACAATGCTCTGGCGA
AGGACGCGTGCGCACTTCTGCAGGCATGTTCCAGAGCGTCATCATCACAT
GCCATCGCTGCAATGGCACCGGTGATCTAATGCGCGATCCTTGCTCGACG
TGCGACGGCGAAGGCATCGTCAGCGCCTTTAAGGAAGCCTCTGTATCGTT
CCCAGCGGGCTGCGACACTGGCATGGTGCTACGTGTTCCGGGCGCAGGGG
CTACAGGCGTCAGGAGGGGACCGCCGGGAGACCTTTTCATTCAGGTCAAA
GTTAAGGAGGACAACTACTTTCATCGCAGCGGAAAGGATCTACACGTCGT
TGCCCCTATCAGTTTTGCGCAGGCCGCCTTGGGCGGAACGGTCGAAGTGC
GAACCCTCGATGGCACAGAGAGTATATCTGTACGCCAGGGTACGCAACCC
GACGACACTTACGTACTACACGGTCGCGCAATGCGAGGCGTCAACAGCCC
GCGCCGTGGCAACCAAGTAGTCCACTTCAAGATCGTCGTGCCTGAGAATC
TCACCACTCGCCAAAAGCAACTCATTACAGACCTAATGGAAGAGGATGGC
GGGAAGATCACCAAGCCTGAGGATTGCGCTTCCCAGTCTTTACTTCAACG
TTTTCAACGCTTGTTGCGACGGACAATATCCCCGCGTTAA
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