Ggra9875.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9875.t1
Unique Name	Ggra9875.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	442

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000170_pilon	contig	tig00000170_pilon:182875..184200 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	102129.Lepto7375DRAFT_5537
PFAMs	NAD_binding_11,NAD_binding_2
Max annot lvl	2\|Bacteria
KEGG rclass	RC00099
KEGG ko	ko:K00020
KEGG Reaction	R05066
KEGG Pathway	ko00280,ko01100,map00280,map01100
Evalue	6.14e-115
EggNOG OGs	COG2084@1\|root,COG2084@2\|Bacteria
EC	1.1.1.31
Description	phosphogluconate dehydrogenase (decarboxylating) activity
COG category	I
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9875	Ggra9875	Gracilaria gracilis GNS1m male	gene	tig00000170_pilon 182875..184200 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9875.t1.start1	Ggra9875.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000170_pilon 182875..182877 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9875.t1.CDS1	Ggra9875.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000170_pilon 182875..184200 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9875.t1.exon1	Ggra9875.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000170_pilon 182875..184200 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9875.t1.stop1	Ggra9875.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000170_pilon 184198..184200 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9875.t1	Ggra9875.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000170_pilon 182875..184200 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000170_pilon:182875..184200+
coding sequence from alignment at tig00000170_pilon:182875..184200+

mRNA sequence

>Ggra9875.t1 ID=Ggra9875.t1|Name=Ggra9875.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=442bp
MSSYSRVGFIGCGNIGEPMILGLLQNGFKVGVYDIRKLATDKAVAAGAEW
CPSPRQAAQHCDILCTCLPLPIHVRQVMLGDNGGLEAMRSNSIWIDCSTT
DYHNTLHIAEQAERKQVMCLEAPVSDLSHMGVDFCNIAFYVGGEKKPFDL
CQKFFSSTGKKTFHVGRIGMAQNAKLLTNLLFYGALVNFGEATAVVQAAG
IPMHWWWQCLQNSHGRSQMAVEYAPLVFDGSYDSSCSLLIGEKDMMLTVK
LGKELAVDVPFAEVINAAYREGVKRYDRNEGELIIVRVTEDDNKVEFRIP
NFYAPSPYGSNKAYKHAEEMEVDDFGRETPAPPKWVKAPPFEGSDEQREV
INTACEYLALVNEALYDEAFRLGKGMDLDDEQLRHMMVWSCGASWISDYG
QQFRAEYQVLDKMSAFVKAHGVKLRSFAAVERALRTRHGWR*

spliced messenger RNA

>Ggra9875.t1 ID=Ggra9875.t1|Name=Ggra9875.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1326bp|location=Sequence derived from alignment at tig00000170_pilon:182875..184200+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTCTTACTCCCGAGTGGGCTTTATCGGCTGCGGAAACATTGGAGA
ACCCATGATCCTTGGGTTGCTTCAGAATGGGTTCAAAGTTGGCGTGTACG
ACATTCGCAAGTTAGCAACTGACAAAGCGGTAGCCGCTGGCGCCGAGTGG
TGTCCTTCACCGCGACAAGCTGCACAACACTGTGATATCCTGTGCACCTG
CCTGCCTTTGCCGATTCACGTGCGACAGGTCATGCTTGGTGACAATGGCG
GTCTGGAAGCGATGAGGTCAAACTCTATATGGATCGACTGTTCAACCACC
GACTACCACAACACGCTACACATCGCGGAGCAAGCCGAGCGAAAGCAGGT
GATGTGTCTTGAAGCGCCAGTATCGGACCTCAGTCACATGGGCGTAGATT
TCTGTAATATCGCCTTCTATGTGGGCGGCGAAAAGAAACCATTTGATTTG
TGCCAAAAGTTCTTCTCAAGCACTGGTAAGAAAACCTTCCACGTAGGAAG
GATCGGGATGGCTCAAAATGCAAAGCTGCTGACCAACCTGTTGTTCTACG
GTGCGCTGGTGAACTTTGGCGAGGCTACTGCTGTGGTTCAGGCTGCTGGC
ATTCCCATGCACTGGTGGTGGCAGTGCTTGCAGAACAGTCATGGACGTAG
TCAGATGGCGGTGGAATACGCACCCTTGGTATTCGACGGAAGCTATGACT
CGTCATGCAGCTTGTTAATCGGTGAGAAGGATATGATGCTTACTGTGAAG
TTGGGTAAGGAACTAGCTGTTGATGTGCCATTTGCCGAAGTGATAAACGC
AGCGTACAGGGAGGGTGTGAAGCGATACGACAGGAACGAAGGAGAATTGA
TTATCGTGCGCGTCACTGAAGATGATAACAAGGTTGAATTCAGAATCCCA
AACTTCTACGCCCCCTCACCGTATGGATCGAACAAAGCGTATAAACACGC
GGAAGAAATGGAAGTGGACGACTTCGGACGCGAGACACCGGCTCCACCGA
AGTGGGTTAAGGCACCGCCGTTTGAAGGCAGTGACGAGCAGAGGGAGGTG
ATTAACACGGCGTGCGAGTACCTGGCGTTGGTGAATGAGGCTCTGTACGA
CGAAGCGTTTCGACTCGGAAAGGGGATGGATCTAGACGACGAACAGCTGC
GGCACATGATGGTGTGGAGCTGTGGCGCGAGCTGGATTTCCGATTACGGG
CAACAATTTCGGGCGGAGTACCAGGTGCTGGACAAGATGAGTGCATTTGT
GAAGGCACATGGCGTGAAATTGCGATCGTTCGCGGCGGTGGAGCGCGCCT
TGCGTACGCGCCACGGATGGCGCTGA

protein sequence of Ggra9875.t1

>Ggra9875.t1 ID=Ggra9875.t1|Name=Ggra9875.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=442bp
MSSYSRVGFIGCGNIGEPMILGLLQNGFKVGVYDIRKLATDKAVAAGAEW
CPSPRQAAQHCDILCTCLPLPIHVRQVMLGDNGGLEAMRSNSIWIDCSTT
DYHNTLHIAEQAERKQVMCLEAPVSDLSHMGVDFCNIAFYVGGEKKPFDL
CQKFFSSTGKKTFHVGRIGMAQNAKLLTNLLFYGALVNFGEATAVVQAAG
IPMHWWWQCLQNSHGRSQMAVEYAPLVFDGSYDSSCSLLIGEKDMMLTVK
LGKELAVDVPFAEVINAAYREGVKRYDRNEGELIIVRVTEDDNKVEFRIP
NFYAPSPYGSNKAYKHAEEMEVDDFGRETPAPPKWVKAPPFEGSDEQREV
INTACEYLALVNEALYDEAFRLGKGMDLDDEQLRHMMVWSCGASWISDYG
QQFRAEYQVLDKMSAFVKAHGVKLRSFAAVERALRTRHGWR*

mRNA from alignment at tig00000170_pilon:182875..184200+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9875.t1 ID=Ggra9875.t1|Name=Ggra9875.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1326bp|location=Sequence derived from alignment at tig00000170_pilon:182875..184200+ (Gracilaria gracilis GNS1m male)
ATGTCGTCTTACTCCCGAGTGGGCTTTATCGGCTGCGGAAACATTGGAGA
ACCCATGATCCTTGGGTTGCTTCAGAATGGGTTCAAAGTTGGCGTGTACG
ACATTCGCAAGTTAGCAACTGACAAAGCGGTAGCCGCTGGCGCCGAGTGG
TGTCCTTCACCGCGACAAGCTGCACAACACTGTGATATCCTGTGCACCTG
CCTGCCTTTGCCGATTCACGTGCGACAGGTCATGCTTGGTGACAATGGCG
GTCTGGAAGCGATGAGGTCAAACTCTATATGGATCGACTGTTCAACCACC
GACTACCACAACACGCTACACATCGCGGAGCAAGCCGAGCGAAAGCAGGT
GATGTGTCTTGAAGCGCCAGTATCGGACCTCAGTCACATGGGCGTAGATT
TCTGTAATATCGCCTTCTATGTGGGCGGCGAAAAGAAACCATTTGATTTG
TGCCAAAAGTTCTTCTCAAGCACTGGTAAGAAAACCTTCCACGTAGGAAG
GATCGGGATGGCTCAAAATGCAAAGCTGCTGACCAACCTGTTGTTCTACG
GTGCGCTGGTGAACTTTGGCGAGGCTACTGCTGTGGTTCAGGCTGCTGGC
ATTCCCATGCACTGGTGGTGGCAGTGCTTGCAGAACAGTCATGGACGTAG
TCAGATGGCGGTGGAATACGCACCCTTGGTATTCGACGGAAGCTATGACT
CGTCATGCAGCTTGTTAATCGGTGAGAAGGATATGATGCTTACTGTGAAG
TTGGGTAAGGAACTAGCTGTTGATGTGCCATTTGCCGAAGTGATAAACGC
AGCGTACAGGGAGGGTGTGAAGCGATACGACAGGAACGAAGGAGAATTGA
TTATCGTGCGCGTCACTGAAGATGATAACAAGGTTGAATTCAGAATCCCA
AACTTCTACGCCCCCTCACCGTATGGATCGAACAAAGCGTATAAACACGC
GGAAGAAATGGAAGTGGACGACTTCGGACGCGAGACACCGGCTCCACCGA
AGTGGGTTAAGGCACCGCCGTTTGAAGGCAGTGACGAGCAGAGGGAGGTG
ATTAACACGGCGTGCGAGTACCTGGCGTTGGTGAATGAGGCTCTGTACGA
CGAAGCGTTTCGACTCGGAAAGGGGATGGATCTAGACGACGAACAGCTGC
GGCACATGATGGTGTGGAGCTGTGGCGCGAGCTGGATTTCCGATTACGGG
CAACAATTTCGGGCGGAGTACCAGGTGCTGGACAAGATGAGTGCATTTGT
GAAGGCACATGGCGTGAAATTGCGATCGTTCGCGGCGGTGGAGCGCGCCT
TGCGTACGCGCCACGGATGGCGCTGA

Coding sequence (CDS) from alignment at tig00000170_pilon:182875..184200+

>Ggra9875.t1 ID=Ggra9875.t1|Name=Ggra9875.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1326bp|location=Sequence derived from alignment at tig00000170_pilon:182875..184200+ (Gracilaria gracilis GNS1m male)
ATGTCGTCTTACTCCCGAGTGGGCTTTATCGGCTGCGGAAACATTGGAGA
ACCCATGATCCTTGGGTTGCTTCAGAATGGGTTCAAAGTTGGCGTGTACG
ACATTCGCAAGTTAGCAACTGACAAAGCGGTAGCCGCTGGCGCCGAGTGG
TGTCCTTCACCGCGACAAGCTGCACAACACTGTGATATCCTGTGCACCTG
CCTGCCTTTGCCGATTCACGTGCGACAGGTCATGCTTGGTGACAATGGCG
GTCTGGAAGCGATGAGGTCAAACTCTATATGGATCGACTGTTCAACCACC
GACTACCACAACACGCTACACATCGCGGAGCAAGCCGAGCGAAAGCAGGT
GATGTGTCTTGAAGCGCCAGTATCGGACCTCAGTCACATGGGCGTAGATT
TCTGTAATATCGCCTTCTATGTGGGCGGCGAAAAGAAACCATTTGATTTG
TGCCAAAAGTTCTTCTCAAGCACTGGTAAGAAAACCTTCCACGTAGGAAG
GATCGGGATGGCTCAAAATGCAAAGCTGCTGACCAACCTGTTGTTCTACG
GTGCGCTGGTGAACTTTGGCGAGGCTACTGCTGTGGTTCAGGCTGCTGGC
ATTCCCATGCACTGGTGGTGGCAGTGCTTGCAGAACAGTCATGGACGTAG
TCAGATGGCGGTGGAATACGCACCCTTGGTATTCGACGGAAGCTATGACT
CGTCATGCAGCTTGTTAATCGGTGAGAAGGATATGATGCTTACTGTGAAG
TTGGGTAAGGAACTAGCTGTTGATGTGCCATTTGCCGAAGTGATAAACGC
AGCGTACAGGGAGGGTGTGAAGCGATACGACAGGAACGAAGGAGAATTGA
TTATCGTGCGCGTCACTGAAGATGATAACAAGGTTGAATTCAGAATCCCA
AACTTCTACGCCCCCTCACCGTATGGATCGAACAAAGCGTATAAACACGC
GGAAGAAATGGAAGTGGACGACTTCGGACGCGAGACACCGGCTCCACCGA
AGTGGGTTAAGGCACCGCCGTTTGAAGGCAGTGACGAGCAGAGGGAGGTG
ATTAACACGGCGTGCGAGTACCTGGCGTTGGTGAATGAGGCTCTGTACGA
CGAAGCGTTTCGACTCGGAAAGGGGATGGATCTAGACGACGAACAGCTGC
GGCACATGATGGTGTGGAGCTGTGGCGCGAGCTGGATTTCCGATTACGGG
CAACAATTTCGGGCGGAGTACCAGGTGCTGGACAAGATGAGTGCATTTGT
GAAGGCACATGGCGTGAAATTGCGATCGTTCGCGGCGGTGGAGCGCGCCT
TGCGTACGCGCCACGGATGGCGCTGA