Ggra9873.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9873.t1
Unique Name	Ggra9873.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	317

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000170_pilon	contig	tig00000170_pilon:178681..179631 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	118797.XP_007458120.1
PFAMs	2OG-FeII_Oxy,DIOX_N
Max annot lvl	33154\|Opisthokonta
Evalue	1.74e-78
EggNOG OGs	COG3491@1\|root,KOG0143@2759\|Eukaryota,38F5M@33154\|Opisthokonta
Description	2OG-Fe(II) oxygenase superfamily
COG category	Q

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9873	Ggra9873	Gracilaria gracilis GNS1m male	gene	tig00000170_pilon 178681..179631 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9873.t1.stop1	Ggra9873.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000170_pilon 178681..178683 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9873.t1.CDS1	Ggra9873.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000170_pilon 178681..179631 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9873.t1.exon1	Ggra9873.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000170_pilon 178681..179631 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9873.t1.start1	Ggra9873.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000170_pilon 179629..179631 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9873.t1	Ggra9873.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000170_pilon 178681..179631 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000170_pilon:178681..179631-
coding sequence from alignment at tig00000170_pilon:178681..179631-

mRNA sequence

>Ggra9873.t1 ID=Ggra9873.t1|Name=Ggra9873.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=317bp
MVEQLPSIEFSDLLYPTADTIERLRHICVSFGFFTISSHPVPATVLENAR
SASISFFELPYEVKERYGHEKQLVTPPNCRGYTRQEVLNKDDRDNGKELF
DLGVEKRPLTPGVPFSGPTVLPTEEDAPRFSSSLLELQQVVLSSLVPVIS
HALALALGKNSGFFDDYVRDMTLIQRVIYYPHNATAGAHTDSGMFTVLFQ
DETSNGEEGSLKVHTGGKWIDVPGRKHEVVVNLGDTLQLWSNGQFVSTIH
KVQHTGNKARVSMPFFVYPDIQSAFVPFGTEQDCSSKVHVKDVIMKNFTN
IWVRGTGAGRELLELE*

spliced messenger RNA

>Ggra9873.t1 ID=Ggra9873.t1|Name=Ggra9873.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=951bp|location=Sequence derived from alignment at tig00000170_pilon:178681..179631- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGAACAGCTACCCTCAATTGAATTCTCTGATTTGCTCTATCCCAC
AGCCGATACAATAGAGCGTCTCCGCCACATCTGTGTGTCGTTTGGATTCT
TCACAATCAGTAGCCACCCTGTTCCGGCCACAGTTCTTGAGAACGCTCGG
TCCGCTTCTATAAGCTTCTTCGAACTTCCGTACGAAGTCAAGGAGCGCTA
CGGGCATGAGAAACAGCTTGTTACACCTCCAAACTGTCGCGGATACACTC
GACAAGAGGTGCTCAACAAAGATGATCGCGACAATGGAAAGGAACTCTTT
GACTTGGGCGTGGAGAAGCGGCCCCTCACACCTGGCGTACCATTTTCTGG
TCCCACTGTTTTGCCCACAGAAGAGGACGCACCCAGATTCTCGTCTTCAC
TGCTTGAGTTGCAGCAGGTGGTGTTAAGTAGTCTGGTCCCGGTGATAAGC
CACGCTCTTGCGCTTGCATTGGGCAAGAACTCTGGTTTCTTTGACGATTA
TGTTCGTGACATGACTCTAATCCAACGCGTAATCTACTACCCTCACAACG
CCACTGCTGGTGCTCACACGGACAGTGGAATGTTCACAGTGCTGTTTCAA
GATGAGACCAGCAACGGTGAAGAGGGGTCTTTGAAGGTGCACACTGGTGG
TAAGTGGATCGACGTGCCAGGAAGGAAGCATGAGGTGGTGGTGAACCTCG
GAGACACATTGCAGCTGTGGTCAAATGGACAATTCGTGAGCACTATTCAC
AAGGTGCAACACACGGGCAACAAAGCGAGGGTTTCGATGCCGTTTTTTGT
GTACCCCGACATCCAATCCGCATTCGTTCCGTTCGGCACAGAACAAGATT
GCAGCTCAAAGGTGCACGTGAAGGACGTGATAATGAAGAACTTCACCAAC
ATTTGGGTGCGTGGCACCGGAGCCGGGCGGGAGTTGTTGGAGTTAGAGTA
A

protein sequence of Ggra9873.t1

>Ggra9873.t1 ID=Ggra9873.t1|Name=Ggra9873.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=317bp
MVEQLPSIEFSDLLYPTADTIERLRHICVSFGFFTISSHPVPATVLENAR
SASISFFELPYEVKERYGHEKQLVTPPNCRGYTRQEVLNKDDRDNGKELF
DLGVEKRPLTPGVPFSGPTVLPTEEDAPRFSSSLLELQQVVLSSLVPVIS
HALALALGKNSGFFDDYVRDMTLIQRVIYYPHNATAGAHTDSGMFTVLFQ
DETSNGEEGSLKVHTGGKWIDVPGRKHEVVVNLGDTLQLWSNGQFVSTIH
KVQHTGNKARVSMPFFVYPDIQSAFVPFGTEQDCSSKVHVKDVIMKNFTN
IWVRGTGAGRELLELE*

mRNA from alignment at tig00000170_pilon:178681..179631-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9873.t1 ID=Ggra9873.t1|Name=Ggra9873.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=951bp|location=Sequence derived from alignment at tig00000170_pilon:178681..179631- (Gracilaria gracilis GNS1m male)
ATGGTCGAACAGCTACCCTCAATTGAATTCTCTGATTTGCTCTATCCCAC
AGCCGATACAATAGAGCGTCTCCGCCACATCTGTGTGTCGTTTGGATTCT
TCACAATCAGTAGCCACCCTGTTCCGGCCACAGTTCTTGAGAACGCTCGG
TCCGCTTCTATAAGCTTCTTCGAACTTCCGTACGAAGTCAAGGAGCGCTA
CGGGCATGAGAAACAGCTTGTTACACCTCCAAACTGTCGCGGATACACTC
GACAAGAGGTGCTCAACAAAGATGATCGCGACAATGGAAAGGAACTCTTT
GACTTGGGCGTGGAGAAGCGGCCCCTCACACCTGGCGTACCATTTTCTGG
TCCCACTGTTTTGCCCACAGAAGAGGACGCACCCAGATTCTCGTCTTCAC
TGCTTGAGTTGCAGCAGGTGGTGTTAAGTAGTCTGGTCCCGGTGATAAGC
CACGCTCTTGCGCTTGCATTGGGCAAGAACTCTGGTTTCTTTGACGATTA
TGTTCGTGACATGACTCTAATCCAACGCGTAATCTACTACCCTCACAACG
CCACTGCTGGTGCTCACACGGACAGTGGAATGTTCACAGTGCTGTTTCAA
GATGAGACCAGCAACGGTGAAGAGGGGTCTTTGAAGGTGCACACTGGTGG
TAAGTGGATCGACGTGCCAGGAAGGAAGCATGAGGTGGTGGTGAACCTCG
GAGACACATTGCAGCTGTGGTCAAATGGACAATTCGTGAGCACTATTCAC
AAGGTGCAACACACGGGCAACAAAGCGAGGGTTTCGATGCCGTTTTTTGT
GTACCCCGACATCCAATCCGCATTCGTTCCGTTCGGCACAGAACAAGATT
GCAGCTCAAAGGTGCACGTGAAGGACGTGATAATGAAGAACTTCACCAAC
ATTTGGGTGCGTGGCACCGGAGCCGGGCGGGAGTTGTTGGAGTTAGAGTA
A

Coding sequence (CDS) from alignment at tig00000170_pilon:178681..179631-

>Ggra9873.t1 ID=Ggra9873.t1|Name=Ggra9873.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=951bp|location=Sequence derived from alignment at tig00000170_pilon:178681..179631- (Gracilaria gracilis GNS1m male)
ATGGTCGAACAGCTACCCTCAATTGAATTCTCTGATTTGCTCTATCCCAC
AGCCGATACAATAGAGCGTCTCCGCCACATCTGTGTGTCGTTTGGATTCT
TCACAATCAGTAGCCACCCTGTTCCGGCCACAGTTCTTGAGAACGCTCGG
TCCGCTTCTATAAGCTTCTTCGAACTTCCGTACGAAGTCAAGGAGCGCTA
CGGGCATGAGAAACAGCTTGTTACACCTCCAAACTGTCGCGGATACACTC
GACAAGAGGTGCTCAACAAAGATGATCGCGACAATGGAAAGGAACTCTTT
GACTTGGGCGTGGAGAAGCGGCCCCTCACACCTGGCGTACCATTTTCTGG
TCCCACTGTTTTGCCCACAGAAGAGGACGCACCCAGATTCTCGTCTTCAC
TGCTTGAGTTGCAGCAGGTGGTGTTAAGTAGTCTGGTCCCGGTGATAAGC
CACGCTCTTGCGCTTGCATTGGGCAAGAACTCTGGTTTCTTTGACGATTA
TGTTCGTGACATGACTCTAATCCAACGCGTAATCTACTACCCTCACAACG
CCACTGCTGGTGCTCACACGGACAGTGGAATGTTCACAGTGCTGTTTCAA
GATGAGACCAGCAACGGTGAAGAGGGGTCTTTGAAGGTGCACACTGGTGG
TAAGTGGATCGACGTGCCAGGAAGGAAGCATGAGGTGGTGGTGAACCTCG
GAGACACATTGCAGCTGTGGTCAAATGGACAATTCGTGAGCACTATTCAC
AAGGTGCAACACACGGGCAACAAAGCGAGGGTTTCGATGCCGTTTTTTGT
GTACCCCGACATCCAATCCGCATTCGTTCCGTTCGGCACAGAACAAGATT
GCAGCTCAAAGGTGCACGTGAAGGACGTGATAATGAAGAACTTCACCAAC
ATTTGGGTGCGTGGCACCGGAGCCGGGCGGGAGTTGTTGGAGTTAGAGTA
A