Ggra9872.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9872.t1
Unique NameGgra9872.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length307
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000170_piloncontigtig00000170_pilon:177121..178041 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog80637.XP_007772140.1
Max annot lvl4751|Fungi
Evalue9.72e-07
EggNOG OGs2E8MP@1|root,2SF3D@2759|Eukaryota,38JKA@33154|Opisthokonta,3PMGD@4751|Fungi,3V9KG@5204|Basidiomycota,22CAR@155619|Agaricomycetes
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9872Ggra9872Gracilaria gracilis GNS1m malegenetig00000170_pilon 177121..178041 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9872.t1.stop1Ggra9872.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000170_pilon 177121..177123 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9872.t1.CDS1Ggra9872.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000170_pilon 177121..178041 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9872.t1.exon1Ggra9872.t1.exon1Gracilaria gracilis GNS1m maleexontig00000170_pilon 177121..178041 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9872.t1.start1Ggra9872.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000170_pilon 178039..178041 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9872.t1Ggra9872.t1Gracilaria gracilis GNS1m malepolypeptidetig00000170_pilon 177121..178041 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9872.t1 ID=Ggra9872.t1|Name=Ggra9872.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=307bp
MDAPHIPTVKSPNQPPEQAPSPPQRTCRPIACRPIPPLTLIPLTYPDAAH
AHPVLPSKDISPKSKDNKERKSRAGAPNYSAEDVSALLSIVEEVEPTGAG
NWAFVALRFSEWALENERPHREQISLRNKFDKLANTKIKACDPACPEIVR
RAKGIARVIHNKYASMMMEQGAEEDEQNHRLKPKHDSRGDAEKPDSDIED
AEVLVTRARKRKKGAHGAPVKLTSEELMINYVGQMSRHIGTIAKSLTAEM
SKSCDKHATHLSKEDINEIVKREVRESMLVTNNILAKMNLMLENISAKLN
GPQSGV*
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spliced messenger RNA

>Ggra9872.t1 ID=Ggra9872.t1|Name=Ggra9872.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=921bp|location=Sequence derived from alignment at tig00000170_pilon:177121..178041- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGCTCCTCATATCCCAACCGTCAAGAGCCCGAACCAACCCCCTGA
ACAAGCACCCAGTCCTCCACAGCGCACATGTCGCCCCATAGCGTGCCGCC
CCATCCCACCACTTACTCTCATTCCCCTTACGTACCCGGACGCCGCACAC
GCTCACCCCGTTCTTCCATCCAAGGATATCAGTCCAAAGTCAAAGGATAA
CAAAGAGAGAAAATCCCGTGCTGGTGCGCCCAACTATTCGGCGGAAGATG
TAAGCGCGCTACTCAGTATAGTCGAAGAGGTGGAGCCGACAGGAGCTGGC
AATTGGGCATTTGTTGCTCTTAGGTTTTCTGAATGGGCTTTGGAGAACGA
ACGGCCACATAGGGAGCAGATTTCATTGCGCAATAAGTTCGACAAGTTGG
CAAATACAAAGATTAAAGCGTGTGATCCGGCTTGCCCGGAAATTGTTCGT
CGCGCGAAGGGTATTGCGCGCGTCATTCATAACAAATATGCGTCTATGAT
GATGGAGCAGGGCGCTGAAGAAGACGAACAGAACCACCGCTTGAAACCCA
AACATGATAGCAGAGGCGATGCAGAAAAGCCTGACTCAGACATAGAAGAT
GCTGAAGTGCTAGTGACACGCGCGAGAAAACGGAAGAAGGGGGCACACGG
AGCCCCTGTGAAATTGACAAGTGAGGAGCTGATGATCAACTACGTCGGGC
AGATGAGCAGACACATTGGCACAATCGCCAAGTCACTCACCGCGGAAATG
TCCAAAAGTTGTGATAAACATGCAACGCATTTGTCTAAAGAAGATATCAA
TGAAATTGTGAAACGAGAAGTCCGCGAGAGCATGCTTGTCACGAACAACA
TTCTAGCGAAGATGAACCTAATGTTGGAGAATATCAGTGCGAAGCTAAAT
GGGCCACAGTCCGGTGTGTGA
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protein sequence of Ggra9872.t1

>Ggra9872.t1 ID=Ggra9872.t1|Name=Ggra9872.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=307bp
MDAPHIPTVKSPNQPPEQAPSPPQRTCRPIACRPIPPLTLIPLTYPDAAH
AHPVLPSKDISPKSKDNKERKSRAGAPNYSAEDVSALLSIVEEVEPTGAG
NWAFVALRFSEWALENERPHREQISLRNKFDKLANTKIKACDPACPEIVR
RAKGIARVIHNKYASMMMEQGAEEDEQNHRLKPKHDSRGDAEKPDSDIED
AEVLVTRARKRKKGAHGAPVKLTSEELMINYVGQMSRHIGTIAKSLTAEM
SKSCDKHATHLSKEDINEIVKREVRESMLVTNNILAKMNLMLENISAKLN
GPQSGV*
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mRNA from alignment at tig00000170_pilon:177121..178041-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9872.t1 ID=Ggra9872.t1|Name=Ggra9872.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=921bp|location=Sequence derived from alignment at tig00000170_pilon:177121..178041- (Gracilaria gracilis GNS1m male)
ATGGATGCTCCTCATATCCCAACCGTCAAGAGCCCGAACCAACCCCCTGA
ACAAGCACCCAGTCCTCCACAGCGCACATGTCGCCCCATAGCGTGCCGCC
CCATCCCACCACTTACTCTCATTCCCCTTACGTACCCGGACGCCGCACAC
GCTCACCCCGTTCTTCCATCCAAGGATATCAGTCCAAAGTCAAAGGATAA
CAAAGAGAGAAAATCCCGTGCTGGTGCGCCCAACTATTCGGCGGAAGATG
TAAGCGCGCTACTCAGTATAGTCGAAGAGGTGGAGCCGACAGGAGCTGGC
AATTGGGCATTTGTTGCTCTTAGGTTTTCTGAATGGGCTTTGGAGAACGA
ACGGCCACATAGGGAGCAGATTTCATTGCGCAATAAGTTCGACAAGTTGG
CAAATACAAAGATTAAAGCGTGTGATCCGGCTTGCCCGGAAATTGTTCGT
CGCGCGAAGGGTATTGCGCGCGTCATTCATAACAAATATGCGTCTATGAT
GATGGAGCAGGGCGCTGAAGAAGACGAACAGAACCACCGCTTGAAACCCA
AACATGATAGCAGAGGCGATGCAGAAAAGCCTGACTCAGACATAGAAGAT
GCTGAAGTGCTAGTGACACGCGCGAGAAAACGGAAGAAGGGGGCACACGG
AGCCCCTGTGAAATTGACAAGTGAGGAGCTGATGATCAACTACGTCGGGC
AGATGAGCAGACACATTGGCACAATCGCCAAGTCACTCACCGCGGAAATG
TCCAAAAGTTGTGATAAACATGCAACGCATTTGTCTAAAGAAGATATCAA
TGAAATTGTGAAACGAGAAGTCCGCGAGAGCATGCTTGTCACGAACAACA
TTCTAGCGAAGATGAACCTAATGTTGGAGAATATCAGTGCGAAGCTAAAT
GGGCCACAGTCCGGTGTGTGA
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Coding sequence (CDS) from alignment at tig00000170_pilon:177121..178041-

>Ggra9872.t1 ID=Ggra9872.t1|Name=Ggra9872.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=921bp|location=Sequence derived from alignment at tig00000170_pilon:177121..178041- (Gracilaria gracilis GNS1m male)
ATGGATGCTCCTCATATCCCAACCGTCAAGAGCCCGAACCAACCCCCTGA
ACAAGCACCCAGTCCTCCACAGCGCACATGTCGCCCCATAGCGTGCCGCC
CCATCCCACCACTTACTCTCATTCCCCTTACGTACCCGGACGCCGCACAC
GCTCACCCCGTTCTTCCATCCAAGGATATCAGTCCAAAGTCAAAGGATAA
CAAAGAGAGAAAATCCCGTGCTGGTGCGCCCAACTATTCGGCGGAAGATG
TAAGCGCGCTACTCAGTATAGTCGAAGAGGTGGAGCCGACAGGAGCTGGC
AATTGGGCATTTGTTGCTCTTAGGTTTTCTGAATGGGCTTTGGAGAACGA
ACGGCCACATAGGGAGCAGATTTCATTGCGCAATAAGTTCGACAAGTTGG
CAAATACAAAGATTAAAGCGTGTGATCCGGCTTGCCCGGAAATTGTTCGT
CGCGCGAAGGGTATTGCGCGCGTCATTCATAACAAATATGCGTCTATGAT
GATGGAGCAGGGCGCTGAAGAAGACGAACAGAACCACCGCTTGAAACCCA
AACATGATAGCAGAGGCGATGCAGAAAAGCCTGACTCAGACATAGAAGAT
GCTGAAGTGCTAGTGACACGCGCGAGAAAACGGAAGAAGGGGGCACACGG
AGCCCCTGTGAAATTGACAAGTGAGGAGCTGATGATCAACTACGTCGGGC
AGATGAGCAGACACATTGGCACAATCGCCAAGTCACTCACCGCGGAAATG
TCCAAAAGTTGTGATAAACATGCAACGCATTTGTCTAAAGAAGATATCAA
TGAAATTGTGAAACGAGAAGTCCGCGAGAGCATGCTTGTCACGAACAACA
TTCTAGCGAAGATGAACCTAATGTTGGAGAATATCAGTGCGAAGCTAAAT
GGGCCACAGTCCGGTGTGTGA
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