Ggra9869.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9869.t1
Unique Name	Ggra9869.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	580

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000170_pilon	contig	tig00000170_pilon:170061..171800 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4096.XP_009799229.1
PFAMs	MCM_bind
Max annot lvl	35493\|Streptophyta
GOs	GO:0000228,GO:0000785,GO:0000790,GO:0000819,GO:0003674,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006301,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009526,GO:0009536,GO:0009941,GO:0009987,GO:0016043,GO:0022402,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0042555,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0050896,GO:0051276,GO:0051716,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0098813,GO:1901360,GO:1901576
Evalue	2.19e-49
EggNOG OGs	KOG2545@1\|root,KOG2545@2759\|Eukaryota,37N95@33090\|Viridiplantae,3GC6I@35493\|Streptophyta,44GS4@71274\|asterids
Description	Mini-chromosome maintenance replisome factor
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9869	Ggra9869	Gracilaria gracilis GNS1m male	gene	tig00000170_pilon 170061..171800 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9869.t1.start1	Ggra9869.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000170_pilon 170061..170063 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9869.t1.CDS1	Ggra9869.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000170_pilon 170061..171800 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9869.t1.exon1	Ggra9869.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000170_pilon 170061..171800 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9869.t1.stop1	Ggra9869.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000170_pilon 171798..171800 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9869.t1	Ggra9869.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000170_pilon 170061..171800 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000170_pilon:170061..171800+
coding sequence from alignment at tig00000170_pilon:170061..171800+

mRNA sequence

>Ggra9869.t1 ID=Ggra9869.t1|Name=Ggra9869.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=580bp
MVGIQTNFTKDPVAVAHALVKQPGTQVDNVLSSLVPPPLEHIPFVDDPRA
KVGTWVRFDAMVQDIWDSELFVKSSPDGHSGLLVENAAASEHPAAQLCER
LPVYLVSLPGQTKWTKPDRFRSIPSPYIPNTAGGQKRPRECDAQMSDVPQ
QETRPMPSAASTPASGAQVASKRQCIDGVPASIPFPSMGLNLPVLNQTGA
TAIVAKLYDANKARDLRINTMVQVVGILHDGLEFAMNENDRSDPLQAEVL
ARNPGNVKRLHVVQWREMEPWELNPLTKALGTNGIVEAKKEAKSLAGGLR
EILVRYFASALYNDTVAAEYLLMCLLSRPIRTNGGNILGKISVNLVLPSD
ASYEKSQELSAAIRNLCPAVVDVDINISSLNATEVYPRKDYDMNRLKAGA
LQVAPGTCLIVNESKMTNGQLAERGVKNIRALTSASQRCSMPIDFVYYES
EVGIDCRSVLVSVGGKSVVSADVIVRVKPDTGLELQGWKTYSSDLLRKLR
LAMALFSEDGEFDISSEATNDVEKVYVEARRRGEAKDGQETLQKWLSVAR
CCARTFGESVLSIDRWRYAVDLERRREKR*

spliced messenger RNA

>Ggra9869.t1 ID=Ggra9869.t1|Name=Ggra9869.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1740bp|location=Sequence derived from alignment at tig00000170_pilon:170061..171800+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGGCATTCAGACAAATTTCACAAAGGACCCTGTAGCTGTCGCGCA
CGCTCTCGTCAAACAGCCTGGGACCCAAGTCGATAACGTTCTTTCCAGTC
TCGTCCCACCTCCGTTGGAACACATCCCATTCGTGGATGACCCGCGTGCA
AAGGTGGGAACATGGGTGCGTTTCGATGCTATGGTTCAAGATATCTGGGA
TTCAGAACTGTTCGTCAAGTCCTCACCTGATGGACACTCAGGTTTGCTTG
TCGAGAACGCGGCGGCCTCCGAACACCCAGCTGCACAACTGTGTGAAAGA
CTCCCGGTGTACCTTGTTTCGCTCCCTGGCCAGACAAAATGGACTAAGCC
AGACCGCTTCCGTTCAATTCCATCGCCGTATATTCCCAATACGGCTGGAG
GCCAGAAGCGACCTCGAGAATGTGATGCGCAAATGTCTGATGTGCCTCAG
CAAGAGACCAGGCCTATGCCATCCGCTGCGTCAACCCCAGCTTCAGGTGC
ACAAGTAGCGTCCAAACGACAGTGTATTGATGGTGTTCCGGCGTCTATTC
CATTTCCATCCATGGGTCTCAACTTGCCTGTTCTCAATCAGACTGGTGCA
ACCGCAATCGTTGCAAAACTTTATGACGCGAATAAGGCCCGTGACCTAAG
GATTAACACGATGGTACAAGTTGTCGGCATACTACATGATGGGTTGGAAT
TCGCGATGAATGAAAATGATCGAAGTGATCCCCTTCAAGCTGAAGTTCTC
GCGCGCAACCCTGGCAATGTCAAGCGTCTTCACGTAGTTCAATGGAGAGA
AATGGAACCCTGGGAACTAAATCCCCTCACCAAAGCACTCGGTACGAATG
GAATTGTCGAGGCCAAGAAGGAGGCCAAGAGTCTGGCGGGCGGTCTTCGA
GAAATTCTCGTGCGTTATTTCGCCTCTGCTCTTTATAATGATACAGTCGC
TGCTGAGTATCTGCTAATGTGCCTCTTGTCGAGACCTATACGTACGAATG
GTGGAAATATACTAGGCAAGATATCGGTCAATCTGGTGTTGCCAAGTGAT
GCTTCCTACGAAAAGAGCCAAGAGCTTAGTGCTGCTATAAGGAACTTGTG
CCCTGCTGTTGTTGATGTTGACATCAACATATCTTCTTTGAACGCAACAG
AGGTTTACCCAAGAAAGGACTACGATATGAATAGACTGAAAGCTGGTGCG
CTTCAAGTGGCCCCAGGAACTTGCCTAATTGTTAATGAAAGCAAGATGAC
TAATGGCCAATTGGCGGAAAGAGGAGTGAAAAACATTAGAGCATTAACCT
CTGCGTCTCAAAGATGTAGTATGCCGATTGATTTTGTGTACTACGAATCC
GAAGTTGGGATTGATTGCCGCTCTGTCCTGGTGTCCGTGGGCGGCAAATC
AGTTGTCTCAGCGGATGTAATCGTGAGGGTAAAACCGGACACTGGACTCG
AGCTCCAAGGATGGAAGACGTATTCTTCAGACTTATTAAGAAAGTTGAGA
CTCGCAATGGCCCTGTTTTCTGAAGATGGGGAATTTGATATATCAAGTGA
AGCAACCAATGATGTAGAGAAGGTTTATGTGGAGGCGAGGCGACGAGGTG
AGGCCAAGGATGGACAAGAAACGCTACAGAAGTGGTTGAGTGTGGCGCGG
TGTTGCGCTCGGACGTTTGGGGAGAGCGTGTTGAGTATTGATAGATGGCG
GTATGCGGTTGACCTGGAGCGCCGACGGGAAAAACGTTAG

protein sequence of Ggra9869.t1

>Ggra9869.t1 ID=Ggra9869.t1|Name=Ggra9869.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=580bp
MVGIQTNFTKDPVAVAHALVKQPGTQVDNVLSSLVPPPLEHIPFVDDPRA
KVGTWVRFDAMVQDIWDSELFVKSSPDGHSGLLVENAAASEHPAAQLCER
LPVYLVSLPGQTKWTKPDRFRSIPSPYIPNTAGGQKRPRECDAQMSDVPQ
QETRPMPSAASTPASGAQVASKRQCIDGVPASIPFPSMGLNLPVLNQTGA
TAIVAKLYDANKARDLRINTMVQVVGILHDGLEFAMNENDRSDPLQAEVL
ARNPGNVKRLHVVQWREMEPWELNPLTKALGTNGIVEAKKEAKSLAGGLR
EILVRYFASALYNDTVAAEYLLMCLLSRPIRTNGGNILGKISVNLVLPSD
ASYEKSQELSAAIRNLCPAVVDVDINISSLNATEVYPRKDYDMNRLKAGA
LQVAPGTCLIVNESKMTNGQLAERGVKNIRALTSASQRCSMPIDFVYYES
EVGIDCRSVLVSVGGKSVVSADVIVRVKPDTGLELQGWKTYSSDLLRKLR
LAMALFSEDGEFDISSEATNDVEKVYVEARRRGEAKDGQETLQKWLSVAR
CCARTFGESVLSIDRWRYAVDLERRREKR*

mRNA from alignment at tig00000170_pilon:170061..171800+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9869.t1 ID=Ggra9869.t1|Name=Ggra9869.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1740bp|location=Sequence derived from alignment at tig00000170_pilon:170061..171800+ (Gracilaria gracilis GNS1m male)
ATGGTCGGCATTCAGACAAATTTCACAAAGGACCCTGTAGCTGTCGCGCA
CGCTCTCGTCAAACAGCCTGGGACCCAAGTCGATAACGTTCTTTCCAGTC
TCGTCCCACCTCCGTTGGAACACATCCCATTCGTGGATGACCCGCGTGCA
AAGGTGGGAACATGGGTGCGTTTCGATGCTATGGTTCAAGATATCTGGGA
TTCAGAACTGTTCGTCAAGTCCTCACCTGATGGACACTCAGGTTTGCTTG
TCGAGAACGCGGCGGCCTCCGAACACCCAGCTGCACAACTGTGTGAAAGA
CTCCCGGTGTACCTTGTTTCGCTCCCTGGCCAGACAAAATGGACTAAGCC
AGACCGCTTCCGTTCAATTCCATCGCCGTATATTCCCAATACGGCTGGAG
GCCAGAAGCGACCTCGAGAATGTGATGCGCAAATGTCTGATGTGCCTCAG
CAAGAGACCAGGCCTATGCCATCCGCTGCGTCAACCCCAGCTTCAGGTGC
ACAAGTAGCGTCCAAACGACAGTGTATTGATGGTGTTCCGGCGTCTATTC
CATTTCCATCCATGGGTCTCAACTTGCCTGTTCTCAATCAGACTGGTGCA
ACCGCAATCGTTGCAAAACTTTATGACGCGAATAAGGCCCGTGACCTAAG
GATTAACACGATGGTACAAGTTGTCGGCATACTACATGATGGGTTGGAAT
TCGCGATGAATGAAAATGATCGAAGTGATCCCCTTCAAGCTGAAGTTCTC
GCGCGCAACCCTGGCAATGTCAAGCGTCTTCACGTAGTTCAATGGAGAGA
AATGGAACCCTGGGAACTAAATCCCCTCACCAAAGCACTCGGTACGAATG
GAATTGTCGAGGCCAAGAAGGAGGCCAAGAGTCTGGCGGGCGGTCTTCGA
GAAATTCTCGTGCGTTATTTCGCCTCTGCTCTTTATAATGATACAGTCGC
TGCTGAGTATCTGCTAATGTGCCTCTTGTCGAGACCTATACGTACGAATG
GTGGAAATATACTAGGCAAGATATCGGTCAATCTGGTGTTGCCAAGTGAT
GCTTCCTACGAAAAGAGCCAAGAGCTTAGTGCTGCTATAAGGAACTTGTG
CCCTGCTGTTGTTGATGTTGACATCAACATATCTTCTTTGAACGCAACAG
AGGTTTACCCAAGAAAGGACTACGATATGAATAGACTGAAAGCTGGTGCG
CTTCAAGTGGCCCCAGGAACTTGCCTAATTGTTAATGAAAGCAAGATGAC
TAATGGCCAATTGGCGGAAAGAGGAGTGAAAAACATTAGAGCATTAACCT
CTGCGTCTCAAAGATGTAGTATGCCGATTGATTTTGTGTACTACGAATCC
GAAGTTGGGATTGATTGCCGCTCTGTCCTGGTGTCCGTGGGCGGCAAATC
AGTTGTCTCAGCGGATGTAATCGTGAGGGTAAAACCGGACACTGGACTCG
AGCTCCAAGGATGGAAGACGTATTCTTCAGACTTATTAAGAAAGTTGAGA
CTCGCAATGGCCCTGTTTTCTGAAGATGGGGAATTTGATATATCAAGTGA
AGCAACCAATGATGTAGAGAAGGTTTATGTGGAGGCGAGGCGACGAGGTG
AGGCCAAGGATGGACAAGAAACGCTACAGAAGTGGTTGAGTGTGGCGCGG
TGTTGCGCTCGGACGTTTGGGGAGAGCGTGTTGAGTATTGATAGATGGCG
GTATGCGGTTGACCTGGAGCGCCGACGGGAAAAACGTTAG

Coding sequence (CDS) from alignment at tig00000170_pilon:170061..171800+

>Ggra9869.t1 ID=Ggra9869.t1|Name=Ggra9869.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1740bp|location=Sequence derived from alignment at tig00000170_pilon:170061..171800+ (Gracilaria gracilis GNS1m male)
ATGGTCGGCATTCAGACAAATTTCACAAAGGACCCTGTAGCTGTCGCGCA
CGCTCTCGTCAAACAGCCTGGGACCCAAGTCGATAACGTTCTTTCCAGTC
TCGTCCCACCTCCGTTGGAACACATCCCATTCGTGGATGACCCGCGTGCA
AAGGTGGGAACATGGGTGCGTTTCGATGCTATGGTTCAAGATATCTGGGA
TTCAGAACTGTTCGTCAAGTCCTCACCTGATGGACACTCAGGTTTGCTTG
TCGAGAACGCGGCGGCCTCCGAACACCCAGCTGCACAACTGTGTGAAAGA
CTCCCGGTGTACCTTGTTTCGCTCCCTGGCCAGACAAAATGGACTAAGCC
AGACCGCTTCCGTTCAATTCCATCGCCGTATATTCCCAATACGGCTGGAG
GCCAGAAGCGACCTCGAGAATGTGATGCGCAAATGTCTGATGTGCCTCAG
CAAGAGACCAGGCCTATGCCATCCGCTGCGTCAACCCCAGCTTCAGGTGC
ACAAGTAGCGTCCAAACGACAGTGTATTGATGGTGTTCCGGCGTCTATTC
CATTTCCATCCATGGGTCTCAACTTGCCTGTTCTCAATCAGACTGGTGCA
ACCGCAATCGTTGCAAAACTTTATGACGCGAATAAGGCCCGTGACCTAAG
GATTAACACGATGGTACAAGTTGTCGGCATACTACATGATGGGTTGGAAT
TCGCGATGAATGAAAATGATCGAAGTGATCCCCTTCAAGCTGAAGTTCTC
GCGCGCAACCCTGGCAATGTCAAGCGTCTTCACGTAGTTCAATGGAGAGA
AATGGAACCCTGGGAACTAAATCCCCTCACCAAAGCACTCGGTACGAATG
GAATTGTCGAGGCCAAGAAGGAGGCCAAGAGTCTGGCGGGCGGTCTTCGA
GAAATTCTCGTGCGTTATTTCGCCTCTGCTCTTTATAATGATACAGTCGC
TGCTGAGTATCTGCTAATGTGCCTCTTGTCGAGACCTATACGTACGAATG
GTGGAAATATACTAGGCAAGATATCGGTCAATCTGGTGTTGCCAAGTGAT
GCTTCCTACGAAAAGAGCCAAGAGCTTAGTGCTGCTATAAGGAACTTGTG
CCCTGCTGTTGTTGATGTTGACATCAACATATCTTCTTTGAACGCAACAG
AGGTTTACCCAAGAAAGGACTACGATATGAATAGACTGAAAGCTGGTGCG
CTTCAAGTGGCCCCAGGAACTTGCCTAATTGTTAATGAAAGCAAGATGAC
TAATGGCCAATTGGCGGAAAGAGGAGTGAAAAACATTAGAGCATTAACCT
CTGCGTCTCAAAGATGTAGTATGCCGATTGATTTTGTGTACTACGAATCC
GAAGTTGGGATTGATTGCCGCTCTGTCCTGGTGTCCGTGGGCGGCAAATC
AGTTGTCTCAGCGGATGTAATCGTGAGGGTAAAACCGGACACTGGACTCG
AGCTCCAAGGATGGAAGACGTATTCTTCAGACTTATTAAGAAAGTTGAGA
CTCGCAATGGCCCTGTTTTCTGAAGATGGGGAATTTGATATATCAAGTGA
AGCAACCAATGATGTAGAGAAGGTTTATGTGGAGGCGAGGCGACGAGGTG
AGGCCAAGGATGGACAAGAAACGCTACAGAAGTGGTTGAGTGTGGCGCGG
TGTTGCGCTCGGACGTTTGGGGAGAGCGTGTTGAGTATTGATAGATGGCG
GTATGCGGTTGACCTGGAGCGCCGACGGGAAAAACGTTAG