Ggra9867.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9867.t1
Unique Name	Ggra9867.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	759

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000170_pilon	contig	tig00000170_pilon:162997..165389 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9867	Ggra9867	Gracilaria gracilis GNS1m male	gene	tig00000170_pilon 162997..165389 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9867.t1	Ggra9867.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000170_pilon 162997..165389 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9867.t1.stop1	Ggra9867.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000170_pilon 162997..162999 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9867.t1.CDS1	Ggra9867.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000170_pilon 162997..163449 -
Ggra9867.t1.CDS2	Ggra9867.t1.CDS2	Gracilaria gracilis GNS1m male	CDS	tig00000170_pilon 163566..165389 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9867.t1.exon1	Ggra9867.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000170_pilon 162997..163449 -
Ggra9867.t1.exon2	Ggra9867.t1.exon2	Gracilaria gracilis GNS1m male	exon	tig00000170_pilon 163566..165389 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9867.t1.intron1	Ggra9867.t1.intron1	Gracilaria gracilis GNS1m male	intron	tig00000170_pilon 163450..163565 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9867.t1.start1	Ggra9867.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000170_pilon 165387..165389 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000170_pilon:162997..165389-
coding sequence from alignment at tig00000170_pilon:162997..165389-

mRNA sequence

>Ggra9867.t1 ID=Ggra9867.t1|Name=Ggra9867.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=759bp
MTNFLENDTAAEYERLRHAIGQPDFDSLPTSPHQPITEEELQQVPQPLRL
GDEHQGEANYNAIADKRCTGQEGNDAEKGNREEENKMATGEEEAEGNTEA
GSSRPSLQEAVEEGECPSDSGNGSGADAEEGEGVEASPQPSPPNNKEVLN
AQNHTSGSFDEFDRLTKGGEAMKREEMEESQRAITAHRSCEEDEKGMPIP
SHESEHHRHPQRVFKCEGEEGVAVQVDLDGNLTAATRRALKVQQANKAEL
GAVQVVDQPVALPRLSGDDEMAVDNVGVSQYPTQCHPSNAAEDILEAPPS
SPWERRAKFEVDDFFISSPPKPAKTPSRPTSRPFATHLTSSQQRAELFPS
PSPKSLGPPQADSVLPQAPLPHVPRNPAAITKPSTPELLHSQQQSAPNHK
GAPKPISGKDLAVQKPMMKGRASKERARKTFDTVAHGITQATGEKPVLVQ
NGRRVRVVKLPRPASTVCPPRPPRYPTPLPSTVKPTPEPLSVSQGLENIQ
REKVVKRSHPGSAEGHAELLKLLDTLGNLPPRPANGDEKLRAVASATDGY
RADAAVSSAIPTSGDANTTIGGNECPGRDPESQELGAETVAANSMASSPT
ARKSVKRKLELTAEERQEKKRIRAMRNRQSAEKSRRRRKEYAVSLESNVQ
KMRGESQEWRGNYYAGLKRLSEMQRDIREMYGDNHQIATPAMQDVVDDVG
HMVGRCPYTFRREEPEIELRSIGEDGRRGARGRGSRGGRARRAGRGSRVN
RGGRGEHP*

spliced messenger RNA

>Ggra9867.t1 ID=Ggra9867.t1|Name=Ggra9867.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2277bp|location=Sequence derived from alignment at tig00000170_pilon:162997..165389- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAAACTTTCTTGAGAATGATACTGCCGCGGAGTACGAGCGCTTGCG
ACACGCAATTGGGCAACCGGATTTCGACTCATTGCCTACCAGTCCGCACC
AACCTATAACAGAGGAGGAGCTGCAGCAGGTGCCTCAACCTCTTCGTCTT
GGGGATGAACACCAGGGCGAAGCAAACTACAACGCCATCGCCGATAAGCG
CTGTACGGGTCAAGAGGGCAATGATGCAGAAAAAGGGAACAGGGAAGAAG
AAAACAAAATGGCAACGGGCGAAGAAGAAGCTGAAGGTAATACCGAAGCT
GGTTCGAGTCGTCCGAGTTTGCAGGAAGCGGTCGAGGAAGGCGAATGCCC
TTCTGACAGTGGCAACGGCAGCGGGGCTGACGCAGAAGAAGGCGAGGGCG
TGGAAGCTTCGCCTCAACCCTCCCCTCCCAACAACAAAGAAGTTCTAAAT
GCCCAAAATCACACATCGGGTAGCTTCGATGAGTTTGATCGTCTTACTAA
GGGAGGGGAGGCGATGAAGAGAGAGGAGATGGAAGAGAGCCAACGTGCAA
TCACTGCTCATAGAAGCTGCGAGGAGGATGAGAAAGGTATGCCCATTCCC
TCACACGAAAGTGAGCATCATCGACACCCACAACGCGTCTTCAAGTGTGA
GGGTGAAGAGGGTGTGGCTGTACAGGTGGATCTGGACGGCAACTTAACTG
CAGCTACCAGGAGGGCACTGAAAGTCCAACAGGCCAACAAAGCTGAGCTT
GGTGCAGTTCAGGTGGTTGACCAACCTGTAGCGCTGCCCAGGTTGTCAGG
CGACGATGAGATGGCAGTGGATAATGTGGGCGTATCCCAGTACCCAACGC
AATGCCACCCAAGTAACGCCGCCGAGGATATACTGGAAGCACCGCCATCA
AGTCCTTGGGAAAGAAGGGCAAAGTTCGAGGTTGATGACTTCTTCATCTC
ATCACCTCCGAAGCCCGCCAAGACTCCTTCACGCCCCACAAGCCGGCCGT
TTGCAACGCACTTAACTTCTTCGCAGCAACGCGCTGAGCTCTTCCCCTCT
CCTTCCCCAAAGAGCCTGGGACCTCCACAAGCAGACTCGGTGCTTCCCCA
GGCCCCGCTTCCACATGTCCCGCGGAATCCTGCCGCCATCACAAAGCCGA
GCACACCCGAGCTCCTCCACAGTCAGCAGCAGTCTGCTCCGAACCACAAA
GGAGCCCCAAAGCCCATCAGCGGGAAGGATCTCGCAGTTCAAAAACCGAT
GATGAAGGGCAGAGCTTCAAAGGAAAGGGCACGAAAGACATTCGACACTG
TCGCCCATGGGATCACACAAGCCACTGGTGAAAAGCCAGTGCTCGTGCAG
AATGGTCGCCGGGTGCGAGTCGTCAAGCTTCCGCGACCGGCTTCGACCGT
TTGTCCACCTCGACCCCCGCGCTACCCTACACCTCTCCCCTCCACCGTAA
AGCCGACTCCAGAACCCCTATCGGTATCTCAGGGTCTGGAAAATATTCAA
AGAGAGAAGGTCGTGAAGAGGAGCCACCCGGGCTCTGCTGAAGGCCACGC
AGAGCTTCTTAAGCTTTTGGACACCCTCGGCAATCTGCCGCCCCGACCTG
CGAACGGCGATGAGAAGCTTCGGGCGGTGGCATCTGCCACGGACGGATAT
CGAGCCGACGCAGCTGTCAGCTCGGCCATCCCCACAAGTGGAGATGCAAA
CACAACGATAGGTGGGAATGAATGCCCGGGGCGTGACCCAGAGTCACAAG
AATTGGGTGCGGAGACTGTGGCTGCTAACTCAATGGCGTCATCACCTACG
GCGCGTAAGTCCGTTAAGAGAAAGCTTGAACTAACGGCCGAGGAAAGACA
GGAAAAGAAGCGCATCCGAGCAATGCGAAACAGACAATCGGCCGAGAAGA
GTCGCCGTCGTCGCAAGGAGTACGCGGTGTCCCTGGAGTCAAACGTGCAG
AAAATGCGTGGAGAAAGCCAGGAATGGAGGGGGAACTACTACGCAGGTCT
CAAACGGCTTTCGGAAATGCAGCGGGATATACGGGAGATGTACGGGGACA
ACCATCAGATTGCAACGCCAGCCATGCAAGATGTGGTTGATGATGTAGGG
CACATGGTTGGAAGGTGTCCATATACCTTTAGAAGGGAGGAGCCGGAGAT
AGAGCTCCGCAGTATCGGCGAGGATGGACGGCGGGGAGCTCGTGGGCGAG
GAAGCCGAGGTGGACGTGCGAGAAGAGCTGGTCGAGGTAGCCGTGTCAAT
CGAGGCGGTCGCGGTGAGCATCCGTGA

protein sequence of Ggra9867.t1

>Ggra9867.t1 ID=Ggra9867.t1|Name=Ggra9867.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=759bp
MTNFLENDTAAEYERLRHAIGQPDFDSLPTSPHQPITEEELQQVPQPLRL
GDEHQGEANYNAIADKRCTGQEGNDAEKGNREEENKMATGEEEAEGNTEA
GSSRPSLQEAVEEGECPSDSGNGSGADAEEGEGVEASPQPSPPNNKEVLN
AQNHTSGSFDEFDRLTKGGEAMKREEMEESQRAITAHRSCEEDEKGMPIP
SHESEHHRHPQRVFKCEGEEGVAVQVDLDGNLTAATRRALKVQQANKAEL
GAVQVVDQPVALPRLSGDDEMAVDNVGVSQYPTQCHPSNAAEDILEAPPS
SPWERRAKFEVDDFFISSPPKPAKTPSRPTSRPFATHLTSSQQRAELFPS
PSPKSLGPPQADSVLPQAPLPHVPRNPAAITKPSTPELLHSQQQSAPNHK
GAPKPISGKDLAVQKPMMKGRASKERARKTFDTVAHGITQATGEKPVLVQ
NGRRVRVVKLPRPASTVCPPRPPRYPTPLPSTVKPTPEPLSVSQGLENIQ
REKVVKRSHPGSAEGHAELLKLLDTLGNLPPRPANGDEKLRAVASATDGY
RADAAVSSAIPTSGDANTTIGGNECPGRDPESQELGAETVAANSMASSPT
ARKSVKRKLELTAEERQEKKRIRAMRNRQSAEKSRRRRKEYAVSLESNVQ
KMRGESQEWRGNYYAGLKRLSEMQRDIREMYGDNHQIATPAMQDVVDDVG
HMVGRCPYTFRREEPEIELRSIGEDGRRGARGRGSRGGRARRAGRGSRVN
RGGRGEHP*

mRNA from alignment at tig00000170_pilon:162997..165389-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9867.t1 ID=Ggra9867.t1|Name=Ggra9867.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2393bp|location=Sequence derived from alignment at tig00000170_pilon:162997..165389- (Gracilaria gracilis GNS1m male)
ATGACAAACTTTCTTGAGAATGATACTGCCGCGGAGTACGAGCGCTTGCG
ACACGCAATTGGGCAACCGGATTTCGACTCATTGCCTACCAGTCCGCACC
AACCTATAACAGAGGAGGAGCTGCAGCAGGTGCCTCAACCTCTTCGTCTT
GGGGATGAACACCAGGGCGAAGCAAACTACAACGCCATCGCCGATAAGCG
CTGTACGGGTCAAGAGGGCAATGATGCAGAAAAAGGGAACAGGGAAGAAG
AAAACAAAATGGCAACGGGCGAAGAAGAAGCTGAAGGTAATACCGAAGCT
GGTTCGAGTCGTCCGAGTTTGCAGGAAGCGGTCGAGGAAGGCGAATGCCC
TTCTGACAGTGGCAACGGCAGCGGGGCTGACGCAGAAGAAGGCGAGGGCG
TGGAAGCTTCGCCTCAACCCTCCCCTCCCAACAACAAAGAAGTTCTAAAT
GCCCAAAATCACACATCGGGTAGCTTCGATGAGTTTGATCGTCTTACTAA
GGGAGGGGAGGCGATGAAGAGAGAGGAGATGGAAGAGAGCCAACGTGCAA
TCACTGCTCATAGAAGCTGCGAGGAGGATGAGAAAGGTATGCCCATTCCC
TCACACGAAAGTGAGCATCATCGACACCCACAACGCGTCTTCAAGTGTGA
GGGTGAAGAGGGTGTGGCTGTACAGGTGGATCTGGACGGCAACTTAACTG
CAGCTACCAGGAGGGCACTGAAAGTCCAACAGGCCAACAAAGCTGAGCTT
GGTGCAGTTCAGGTGGTTGACCAACCTGTAGCGCTGCCCAGGTTGTCAGG
CGACGATGAGATGGCAGTGGATAATGTGGGCGTATCCCAGTACCCAACGC
AATGCCACCCAAGTAACGCCGCCGAGGATATACTGGAAGCACCGCCATCA
AGTCCTTGGGAAAGAAGGGCAAAGTTCGAGGTTGATGACTTCTTCATCTC
ATCACCTCCGAAGCCCGCCAAGACTCCTTCACGCCCCACAAGCCGGCCGT
TTGCAACGCACTTAACTTCTTCGCAGCAACGCGCTGAGCTCTTCCCCTCT
CCTTCCCCAAAGAGCCTGGGACCTCCACAAGCAGACTCGGTGCTTCCCCA
GGCCCCGCTTCCACATGTCCCGCGGAATCCTGCCGCCATCACAAAGCCGA
GCACACCCGAGCTCCTCCACAGTCAGCAGCAGTCTGCTCCGAACCACAAA
GGAGCCCCAAAGCCCATCAGCGGGAAGGATCTCGCAGTTCAAAAACCGAT
GATGAAGGGCAGAGCTTCAAAGGAAAGGGCACGAAAGACATTCGACACTG
TCGCCCATGGGATCACACAAGCCACTGGTGAAAAGCCAGTGCTCGTGCAG
AATGGTCGCCGGGTGCGAGTCGTCAAGCTTCCGCGACCGGCTTCGACCGT
TTGTCCACCTCGACCCCCGCGCTACCCTACACCTCTCCCCTCCACCGTAA
AGCCGACTCCAGAACCCCTATCGGTATCTCAGGGTCTGGAAAATATTCAA
AGAGAGAAGGTCGTGAAGAGGAGCCACCCGGGCTCTGCTGAAGGCCACGC
AGAGCTTCTTAAGCTTTTGGACACCCTCGGCAATCTGCCGCCCCGACCTG
CGAACGGCGATGAGAAGCTTCGGGCGGTGGCATCTGCCACGGACGGATAT
CGAGCCGACGCAGCTGTCAGCTCGGCCATCCCCACAAGTGGAGATGCAAA
CACAACGATAGGTGGGAATGAATGCCCGGGGCGTGACCCAGAGTCACAAG
AATTGGGTGCGGAGACTGTGGCTGCTAACTCAATGGCGTCATCACCTACG
GCGCGTAAGTCCGTTAAGAGAAAGGTATGTGTTGGAAGCCTTTGTTGTCG
CTTGCTATGATACCTCTGTGATGTGATTAGAAGTCTGACTCTTGTTTTCC
ATTCCCTTCTTTGTGTTGATTGACATTTGTTGAAACGTAGCTTGAACTAA
CGGCCGAGGAAAGACAGGAAAAGAAGCGCATCCGAGCAATGCGAAACAGA
CAATCGGCCGAGAAGAGTCGCCGTCGTCGCAAGGAGTACGCGGTGTCCCT
GGAGTCAAACGTGCAGAAAATGCGTGGAGAAAGCCAGGAATGGAGGGGGA
ACTACTACGCAGGTCTCAAACGGCTTTCGGAAATGCAGCGGGATATACGG
GAGATGTACGGGGACAACCATCAGATTGCAACGCCAGCCATGCAAGATGT
GGTTGATGATGTAGGGCACATGGTTGGAAGGTGTCCATATACCTTTAGAA
GGGAGGAGCCGGAGATAGAGCTCCGCAGTATCGGCGAGGATGGACGGCGG
GGAGCTCGTGGGCGAGGAAGCCGAGGTGGACGTGCGAGAAGAGCTGGTCG
AGGTAGCCGTGTCAATCGAGGCGGTCGCGGTGAGCATCCGTGA

Coding sequence (CDS) from alignment at tig00000170_pilon:162997..165389-

>Ggra9867.t1 ID=Ggra9867.t1|Name=Ggra9867.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2277bp|location=Sequence derived from alignment at tig00000170_pilon:162997..165389- (Gracilaria gracilis GNS1m male)
ATGACAAACTTTCTTGAGAATGATACTGCCGCGGAGTACGAGCGCTTGCG
ACACGCAATTGGGCAACCGGATTTCGACTCATTGCCTACCAGTCCGCACC
AACCTATAACAGAGGAGGAGCTGCAGCAGGTGCCTCAACCTCTTCGTCTT
GGGGATGAACACCAGGGCGAAGCAAACTACAACGCCATCGCCGATAAGCG
CTGTACGGGTCAAGAGGGCAATGATGCAGAAAAAGGGAACAGGGAAGAAG
AAAACAAAATGGCAACGGGCGAAGAAGAAGCTGAAGGTAATACCGAAGCT
GGTTCGAGTCGTCCGAGTTTGCAGGAAGCGGTCGAGGAAGGCGAATGCCC
TTCTGACAGTGGCAACGGCAGCGGGGCTGACGCAGAAGAAGGCGAGGGCG
TGGAAGCTTCGCCTCAACCCTCCCCTCCCAACAACAAAGAAGTTCTAAAT
GCCCAAAATCACACATCGGGTAGCTTCGATGAGTTTGATCGTCTTACTAA
GGGAGGGGAGGCGATGAAGAGAGAGGAGATGGAAGAGAGCCAACGTGCAA
TCACTGCTCATAGAAGCTGCGAGGAGGATGAGAAAGGTATGCCCATTCCC
TCACACGAAAGTGAGCATCATCGACACCCACAACGCGTCTTCAAGTGTGA
GGGTGAAGAGGGTGTGGCTGTACAGGTGGATCTGGACGGCAACTTAACTG
CAGCTACCAGGAGGGCACTGAAAGTCCAACAGGCCAACAAAGCTGAGCTT
GGTGCAGTTCAGGTGGTTGACCAACCTGTAGCGCTGCCCAGGTTGTCAGG
CGACGATGAGATGGCAGTGGATAATGTGGGCGTATCCCAGTACCCAACGC
AATGCCACCCAAGTAACGCCGCCGAGGATATACTGGAAGCACCGCCATCA
AGTCCTTGGGAAAGAAGGGCAAAGTTCGAGGTTGATGACTTCTTCATCTC
ATCACCTCCGAAGCCCGCCAAGACTCCTTCACGCCCCACAAGCCGGCCGT
TTGCAACGCACTTAACTTCTTCGCAGCAACGCGCTGAGCTCTTCCCCTCT
CCTTCCCCAAAGAGCCTGGGACCTCCACAAGCAGACTCGGTGCTTCCCCA
GGCCCCGCTTCCACATGTCCCGCGGAATCCTGCCGCCATCACAAAGCCGA
GCACACCCGAGCTCCTCCACAGTCAGCAGCAGTCTGCTCCGAACCACAAA
GGAGCCCCAAAGCCCATCAGCGGGAAGGATCTCGCAGTTCAAAAACCGAT
GATGAAGGGCAGAGCTTCAAAGGAAAGGGCACGAAAGACATTCGACACTG
TCGCCCATGGGATCACACAAGCCACTGGTGAAAAGCCAGTGCTCGTGCAG
AATGGTCGCCGGGTGCGAGTCGTCAAGCTTCCGCGACCGGCTTCGACCGT
TTGTCCACCTCGACCCCCGCGCTACCCTACACCTCTCCCCTCCACCGTAA
AGCCGACTCCAGAACCCCTATCGGTATCTCAGGGTCTGGAAAATATTCAA
AGAGAGAAGGTCGTGAAGAGGAGCCACCCGGGCTCTGCTGAAGGCCACGC
AGAGCTTCTTAAGCTTTTGGACACCCTCGGCAATCTGCCGCCCCGACCTG
CGAACGGCGATGAGAAGCTTCGGGCGGTGGCATCTGCCACGGACGGATAT
CGAGCCGACGCAGCTGTCAGCTCGGCCATCCCCACAAGTGGAGATGCAAA
CACAACGATAGGTGGGAATGAATGCCCGGGGCGTGACCCAGAGTCACAAG
AATTGGGTGCGGAGACTGTGGCTGCTAACTCAATGGCGTCATCACCTACG
GCGCGTAAGTCCGTTAAGAGAAAGCTTGAACTAACGGCCGAGGAAAGACA
GGAAAAGAAGCGCATCCGAGCAATGCGAAACAGACAATCGGCCGAGAAGA
GTCGCCGTCGTCGCAAGGAGTACGCGGTGTCCCTGGAGTCAAACGTGCAG
AAAATGCGTGGAGAAAGCCAGGAATGGAGGGGGAACTACTACGCAGGTCT
CAAACGGCTTTCGGAAATGCAGCGGGATATACGGGAGATGTACGGGGACA
ACCATCAGATTGCAACGCCAGCCATGCAAGATGTGGTTGATGATGTAGGG
CACATGGTTGGAAGGTGTCCATATACCTTTAGAAGGGAGGAGCCGGAGAT
AGAGCTCCGCAGTATCGGCGAGGATGGACGGCGGGGAGCTCGTGGGCGAG
GAAGCCGAGGTGGACGTGCGAGAAGAGCTGGTCGAGGTAGCCGTGTCAAT
CGAGGCGGTCGCGGTGAGCATCCGTGA