Ggra9865.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9865.t1
Unique NameGgra9865.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length209
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000170_piloncontigtig00000170_pilon:159485..160111 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9865Ggra9865Gracilaria gracilis GNS1m malegenetig00000170_pilon 159485..160111 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9865.t1.start1Ggra9865.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000170_pilon 159485..159487 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9865.t1.CDS1Ggra9865.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000170_pilon 159485..160111 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9865.t1.exon1Ggra9865.t1.exon1Gracilaria gracilis GNS1m maleexontig00000170_pilon 159485..160111 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9865.t1.stop1Ggra9865.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000170_pilon 160109..160111 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9865.t1Ggra9865.t1Gracilaria gracilis GNS1m malepolypeptidetig00000170_pilon 159485..160111 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9865.t1 ID=Ggra9865.t1|Name=Ggra9865.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=209bp
MSDAVLIDLHRPLTQYASPSPPSPPPRPHPFRQHALWAAAALFFSAYLAL
VLYLFLTNGAFRHFVVARANALFALPYVLSLLVVLLCLAPCAPAPPRAQL
DAVITTPADCCLVLLVLLEWATCLALVLVTLIAVHDRLSYVSPDGLIVPV
VQDVPPDAKPADGISRNALIVLLIPLLLMYTLFNFLLHFFSCAQAAWRSR
MGLDDSDV*
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spliced messenger RNA

>Ggra9865.t1 ID=Ggra9865.t1|Name=Ggra9865.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=627bp|location=Sequence derived from alignment at tig00000170_pilon:159485..160111+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGACGCCGTGTTGATCGACCTGCACCGCCCGCTCACGCAGTACGc
gtcgccgtcgcctccgtcgccccccccgcgcccccatccgttccgccagc
acgcgctctgggccgccgccgcGCTCTTCTTCTCCGCGTACCTGGCGCTC
GTGCTGTACCTGTTTCTCACCAACGGCGCCTTTCGCCACTTCGTTGTCGC
CAGAGCCAACGCTTTGTTTGCGTTACCGTATGTGCTTTCGTTGCTTGTTG
TTCTGTTGTGTCTGGCTCCCTGCGCGCCAGCGCCGCCGCGCGCGCAGCTC
GATGCCGTGATTACCACCCCGGCTGACTGTTGTTTAGTGTTGCTTGTGCT
GTTGGAGTGGGCCACTTGTCTGGCGCTCGTCTTGGTCACCCTCATAGCCG
TTCACGACCGCTTGAGCTACGTGAGTCCGGACGGGCTCATAGTGCCAGTC
GTGCAGGATGTGCCGCCAGACGCCAAGCCGGCCGACGGTATCTCTAGAAA
CGCCCTAATCGTGTTGCTCATTCCTCTGCTTCTCATGTACACTCTGTTCA
ACTTTCTGCTTCACTTCTTCTCCTGTGCTCAGGCTGCGTGGCGCTCGCGA
ATGGGTTTAGACGATTCCGATGTATGA
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protein sequence of Ggra9865.t1

>Ggra9865.t1 ID=Ggra9865.t1|Name=Ggra9865.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=209bp
MSDAVLIDLHRPLTQYASPSPPSPPPRPHPFRQHALWAAAALFFSAYLAL
VLYLFLTNGAFRHFVVARANALFALPYVLSLLVVLLCLAPCAPAPPRAQL
DAVITTPADCCLVLLVLLEWATCLALVLVTLIAVHDRLSYVSPDGLIVPV
VQDVPPDAKPADGISRNALIVLLIPLLLMYTLFNFLLHFFSCAQAAWRSR
MGLDDSDV*
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mRNA from alignment at tig00000170_pilon:159485..160111+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9865.t1 ID=Ggra9865.t1|Name=Ggra9865.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=627bp|location=Sequence derived from alignment at tig00000170_pilon:159485..160111+ (Gracilaria gracilis GNS1m male)
ATGTCGGACGCCGTGTTGATCGACCTGCACCGCCCGCTCACGCAGTACGc
gtcgccgtcgcctccgtcgccccccccgcgcccccatccgttccgccagc
acgcgctctgggccgccgccgcGCTCTTCTTCTCCGCGTACCTGGCGCTC
GTGCTGTACCTGTTTCTCACCAACGGCGCCTTTCGCCACTTCGTTGTCGC
CAGAGCCAACGCTTTGTTTGCGTTACCGTATGTGCTTTCGTTGCTTGTTG
TTCTGTTGTGTCTGGCTCCCTGCGCGCCAGCGCCGCCGCGCGCGCAGCTC
GATGCCGTGATTACCACCCCGGCTGACTGTTGTTTAGTGTTGCTTGTGCT
GTTGGAGTGGGCCACTTGTCTGGCGCTCGTCTTGGTCACCCTCATAGCCG
TTCACGACCGCTTGAGCTACGTGAGTCCGGACGGGCTCATAGTGCCAGTC
GTGCAGGATGTGCCGCCAGACGCCAAGCCGGCCGACGGTATCTCTAGAAA
CGCCCTAATCGTGTTGCTCATTCCTCTGCTTCTCATGTACACTCTGTTCA
ACTTTCTGCTTCACTTCTTCTCCTGTGCTCAGGCTGCGTGGCGCTCGCGA
ATGGGTTTAGACGATTCCGATGTATGA
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Coding sequence (CDS) from alignment at tig00000170_pilon:159485..160111+

>Ggra9865.t1 ID=Ggra9865.t1|Name=Ggra9865.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=627bp|location=Sequence derived from alignment at tig00000170_pilon:159485..160111+ (Gracilaria gracilis GNS1m male)
ATGTCGGACGCCGTGTTGATCGACCTGCACCGCCCGCTCACGCAGTACGc
gtcgccgtcgcctccgtcgccccccccgcgcccccatccgttccgccagc
acgcgctctgggccgccgccgcGCTCTTCTTCTCCGCGTACCTGGCGCTC
GTGCTGTACCTGTTTCTCACCAACGGCGCCTTTCGCCACTTCGTTGTCGC
CAGAGCCAACGCTTTGTTTGCGTTACCGTATGTGCTTTCGTTGCTTGTTG
TTCTGTTGTGTCTGGCTCCCTGCGCGCCAGCGCCGCCGCGCGCGCAGCTC
GATGCCGTGATTACCACCCCGGCTGACTGTTGTTTAGTGTTGCTTGTGCT
GTTGGAGTGGGCCACTTGTCTGGCGCTCGTCTTGGTCACCCTCATAGCCG
TTCACGACCGCTTGAGCTACGTGAGTCCGGACGGGCTCATAGTGCCAGTC
GTGCAGGATGTGCCGCCAGACGCCAAGCCGGCCGACGGTATCTCTAGAAA
CGCCCTAATCGTGTTGCTCATTCCTCTGCTTCTCATGTACACTCTGTTCA
ACTTTCTGCTTCACTTCTTCTCCTGTGCTCAGGCTGCGTGGCGCTCGCGA
ATGGGTTTAGACGATTCCGATGTATGA
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