Ggra9864.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9864.t1
Unique NameGgra9864.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length433
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000170_piloncontigtig00000170_pilon:157733..159031 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog115417.EPrPW00000025468
PFAMsSAS-6_N
Max annot lvl121069|Pythiales
Evalue1.97e-08
EggNOG OGs2CMEI@1|root,2QQ4W@2759|Eukaryota,1MAW6@121069|Pythiales
DescriptionSpindle assembly protein. Source PGD
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9864Ggra9864Gracilaria gracilis GNS1m malegenetig00000170_pilon 157733..159031 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9864.t1.stop1Ggra9864.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000170_pilon 157733..157735 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9864.t1.CDS1Ggra9864.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000170_pilon 157733..159031 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9864.t1.exon1Ggra9864.t1.exon1Gracilaria gracilis GNS1m maleexontig00000170_pilon 157733..159031 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9864.t1.start1Ggra9864.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000170_pilon 159029..159031 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9864.t1Ggra9864.t1Gracilaria gracilis GNS1m malepolypeptidetig00000170_pilon 157733..159031 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9864.t1 ID=Ggra9864.t1|Name=Ggra9864.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=433bp
MAPDALLDESLPLVVHRAAAPGPPPTRSSLSASVVWSEGDSALTLTLFDL
SADLLLLRHVQTASTYPPFRAAQSLRVDFSQFAAHLVALLRRVVSDDSYV
AELRLGAAADSAAADAADGGEVEFHTPSERIRDDAVPSTALLRIVEIAPF
KLITHMELVMHHASNQLLVSTLATLARGATASAQRERQLDATLEQTKSQL
HEANVRADRMQRLLTEAEEKVRVGERDAQRCQQLQQQLDRSDERVKELEA
SAESYGDVGAECERLRVVVHSLTEGDAQKDSEIESLKQRVQTVSLQRQQA
CQEIEKGNVIIETLQKELRTSRARSRVKSKLIGKQEQILGERDVKMAELQ
REVVRVRDRAALLQVQKEGVDERLREALGKLEENRAVLQSDQQVIAYLNR
ELNDRLIGQIGGETVQDVIGGTQDVDGAGVAT*
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spliced messenger RNA

>Ggra9864.t1 ID=Ggra9864.t1|Name=Ggra9864.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1299bp|location=Sequence derived from alignment at tig00000170_pilon:157733..159031- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCCGACGCGCTGCTGGACGAGTCGCTGCCGCTGGTGGTACACCG
CGCCGCCGCGCCGGGCCCGCCGCCCACGCGCAGCTCGCTCAGCGCCAGCG
TGGTGTGGAGTGAGGGCGACTCGGCGTTGACGCTCACGCTGTTCGATCTG
TCCGCCGATCTGCTGCTGCTGCGCCACGTGCAGACCGCCTCCACCTACCC
GCCATTCAGGGCGGCGCAGTCGTTGCGGGTGGACTTCTCGCAGTTTGCCG
CCCATCTGGTCGCCCTGCTCAGAAGGGTGGTCAGCGATGACTCGTACGTC
GCCGAGCTTCGTCTGGGCGCTGCTGCGGATAGCGCGGCTGCTGACGCTGC
GGATGGCGGCGAAGTTGAGTTCCATACGCCCAGTGAACGCATTCGCGATG
ACGCCGTTCCGTCTACGGCGCTGCTGCGTATTGTGGAGATTGCCCCCTTC
AAGCTTATTACGCACATGGAGCTTGTGATGCACCATGCGTCTAATCAGCT
ATTGGTCTCCACGCTGGCGACGTTGGCGAGGGGTGCCACTGCGAGTGCGC
AGCGCGAGCGCCAATTGGACGCCACTTTGGAGCAAACAAAATCGCAGCTA
CATGAGGCGAACGTGCGGGCCGATCGTATGCAGCGCCTGTTAACTGAGGC
AGAGGAGAAAGTGCGAGTCGGCGAGCGCGATGCGCAGCGATGTCAGCAGC
TGCAGCAACAGCTTGACCGTAGTGATGAGCGAGTGAAGGAACTTGAAGCT
TCTGCTGAAAGCTATGGTGATGTTGGCGCGGAGTGCGAGCGGCTCAGAGT
TGTGGTGCACAGCTTGACTGAAGGCGATGCGCAGAAGGACTCGGAGATCG
AGTCGCTGAAACAACGCGTGCAGACAGTGAGCTTGCAACGACAGCAAGCT
TGTCAAGAGATTGAGAAGGGCAATGTGATCATCGAGACGCTGCAGAAAGA
GCTACGAACGAGCCGTGCACGGAGCCGGGTGAAAAGCAAGCTGATTGGCA
AGCAGGAACAAATTTTGGGAGAGAGGGATGTGAAGATGGCTGAGTTGCAG
CGGGAAGTGGTGCGCGTTCGTGATCGAGCGGCGTTGCTGCAGGTGCAGAA
GGAAGGCGTTGATGAGCGATTGCGCGAGGCGCTTGGCAAGTTGGAGGAGA
ACCGCGCAGTGTTACAGAGTGACCAGCAGGTTATTGCTTACCTTAATCGA
GAGTTGAACGATAGACTGATAGGGCAGATTGGCGGCGAGACGGTTCAGGA
TGTGATAGGCGGTACGCAGGATGTGGACGGCGCTGGTGTGGCCACCTGA
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protein sequence of Ggra9864.t1

>Ggra9864.t1 ID=Ggra9864.t1|Name=Ggra9864.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=433bp
MAPDALLDESLPLVVHRAAAPGPPPTRSSLSASVVWSEGDSALTLTLFDL
SADLLLLRHVQTASTYPPFRAAQSLRVDFSQFAAHLVALLRRVVSDDSYV
AELRLGAAADSAAADAADGGEVEFHTPSERIRDDAVPSTALLRIVEIAPF
KLITHMELVMHHASNQLLVSTLATLARGATASAQRERQLDATLEQTKSQL
HEANVRADRMQRLLTEAEEKVRVGERDAQRCQQLQQQLDRSDERVKELEA
SAESYGDVGAECERLRVVVHSLTEGDAQKDSEIESLKQRVQTVSLQRQQA
CQEIEKGNVIIETLQKELRTSRARSRVKSKLIGKQEQILGERDVKMAELQ
REVVRVRDRAALLQVQKEGVDERLREALGKLEENRAVLQSDQQVIAYLNR
ELNDRLIGQIGGETVQDVIGGTQDVDGAGVAT*
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mRNA from alignment at tig00000170_pilon:157733..159031-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9864.t1 ID=Ggra9864.t1|Name=Ggra9864.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1299bp|location=Sequence derived from alignment at tig00000170_pilon:157733..159031- (Gracilaria gracilis GNS1m male)
ATGGCGCCCGACGCGCTGCTGGACGAGTCGCTGCCGCTGGTGGTACACCG
CGCCGCCGCGCCGGGCCCGCCGCCCACGCGCAGCTCGCTCAGCGCCAGCG
TGGTGTGGAGTGAGGGCGACTCGGCGTTGACGCTCACGCTGTTCGATCTG
TCCGCCGATCTGCTGCTGCTGCGCCACGTGCAGACCGCCTCCACCTACCC
GCCATTCAGGGCGGCGCAGTCGTTGCGGGTGGACTTCTCGCAGTTTGCCG
CCCATCTGGTCGCCCTGCTCAGAAGGGTGGTCAGCGATGACTCGTACGTC
GCCGAGCTTCGTCTGGGCGCTGCTGCGGATAGCGCGGCTGCTGACGCTGC
GGATGGCGGCGAAGTTGAGTTCCATACGCCCAGTGAACGCATTCGCGATG
ACGCCGTTCCGTCTACGGCGCTGCTGCGTATTGTGGAGATTGCCCCCTTC
AAGCTTATTACGCACATGGAGCTTGTGATGCACCATGCGTCTAATCAGCT
ATTGGTCTCCACGCTGGCGACGTTGGCGAGGGGTGCCACTGCGAGTGCGC
AGCGCGAGCGCCAATTGGACGCCACTTTGGAGCAAACAAAATCGCAGCTA
CATGAGGCGAACGTGCGGGCCGATCGTATGCAGCGCCTGTTAACTGAGGC
AGAGGAGAAAGTGCGAGTCGGCGAGCGCGATGCGCAGCGATGTCAGCAGC
TGCAGCAACAGCTTGACCGTAGTGATGAGCGAGTGAAGGAACTTGAAGCT
TCTGCTGAAAGCTATGGTGATGTTGGCGCGGAGTGCGAGCGGCTCAGAGT
TGTGGTGCACAGCTTGACTGAAGGCGATGCGCAGAAGGACTCGGAGATCG
AGTCGCTGAAACAACGCGTGCAGACAGTGAGCTTGCAACGACAGCAAGCT
TGTCAAGAGATTGAGAAGGGCAATGTGATCATCGAGACGCTGCAGAAAGA
GCTACGAACGAGCCGTGCACGGAGCCGGGTGAAAAGCAAGCTGATTGGCA
AGCAGGAACAAATTTTGGGAGAGAGGGATGTGAAGATGGCTGAGTTGCAG
CGGGAAGTGGTGCGCGTTCGTGATCGAGCGGCGTTGCTGCAGGTGCAGAA
GGAAGGCGTTGATGAGCGATTGCGCGAGGCGCTTGGCAAGTTGGAGGAGA
ACCGCGCAGTGTTACAGAGTGACCAGCAGGTTATTGCTTACCTTAATCGA
GAGTTGAACGATAGACTGATAGGGCAGATTGGCGGCGAGACGGTTCAGGA
TGTGATAGGCGGTACGCAGGATGTGGACGGCGCTGGTGTGGCCACCTGA
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Coding sequence (CDS) from alignment at tig00000170_pilon:157733..159031-

>Ggra9864.t1 ID=Ggra9864.t1|Name=Ggra9864.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1299bp|location=Sequence derived from alignment at tig00000170_pilon:157733..159031- (Gracilaria gracilis GNS1m male)
ATGGCGCCCGACGCGCTGCTGGACGAGTCGCTGCCGCTGGTGGTACACCG
CGCCGCCGCGCCGGGCCCGCCGCCCACGCGCAGCTCGCTCAGCGCCAGCG
TGGTGTGGAGTGAGGGCGACTCGGCGTTGACGCTCACGCTGTTCGATCTG
TCCGCCGATCTGCTGCTGCTGCGCCACGTGCAGACCGCCTCCACCTACCC
GCCATTCAGGGCGGCGCAGTCGTTGCGGGTGGACTTCTCGCAGTTTGCCG
CCCATCTGGTCGCCCTGCTCAGAAGGGTGGTCAGCGATGACTCGTACGTC
GCCGAGCTTCGTCTGGGCGCTGCTGCGGATAGCGCGGCTGCTGACGCTGC
GGATGGCGGCGAAGTTGAGTTCCATACGCCCAGTGAACGCATTCGCGATG
ACGCCGTTCCGTCTACGGCGCTGCTGCGTATTGTGGAGATTGCCCCCTTC
AAGCTTATTACGCACATGGAGCTTGTGATGCACCATGCGTCTAATCAGCT
ATTGGTCTCCACGCTGGCGACGTTGGCGAGGGGTGCCACTGCGAGTGCGC
AGCGCGAGCGCCAATTGGACGCCACTTTGGAGCAAACAAAATCGCAGCTA
CATGAGGCGAACGTGCGGGCCGATCGTATGCAGCGCCTGTTAACTGAGGC
AGAGGAGAAAGTGCGAGTCGGCGAGCGCGATGCGCAGCGATGTCAGCAGC
TGCAGCAACAGCTTGACCGTAGTGATGAGCGAGTGAAGGAACTTGAAGCT
TCTGCTGAAAGCTATGGTGATGTTGGCGCGGAGTGCGAGCGGCTCAGAGT
TGTGGTGCACAGCTTGACTGAAGGCGATGCGCAGAAGGACTCGGAGATCG
AGTCGCTGAAACAACGCGTGCAGACAGTGAGCTTGCAACGACAGCAAGCT
TGTCAAGAGATTGAGAAGGGCAATGTGATCATCGAGACGCTGCAGAAAGA
GCTACGAACGAGCCGTGCACGGAGCCGGGTGAAAAGCAAGCTGATTGGCA
AGCAGGAACAAATTTTGGGAGAGAGGGATGTGAAGATGGCTGAGTTGCAG
CGGGAAGTGGTGCGCGTTCGTGATCGAGCGGCGTTGCTGCAGGTGCAGAA
GGAAGGCGTTGATGAGCGATTGCGCGAGGCGCTTGGCAAGTTGGAGGAGA
ACCGCGCAGTGTTACAGAGTGACCAGCAGGTTATTGCTTACCTTAATCGA
GAGTTGAACGATAGACTGATAGGGCAGATTGGCGGCGAGACGGTTCAGGA
TGTGATAGGCGGTACGCAGGATGTGGACGGCGCTGGTGTGGCCACCTGA
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