Ggra9862.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9862.t1
Unique NameGgra9862.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length584
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000170_piloncontigtig00000170_pilon:153916..156070 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4096.XP_009800753.1
PFAMsPro_isomerase,WD40
Max annot lvl35493|Streptophyta
KEGG koko:K12736
GOsGO:0000003,GO:0000413,GO:0003002,GO:0003006,GO:0003674,GO:0003682,GO:0003755,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0006464,GO:0006807,GO:0007275,GO:0007389,GO:0008144,GO:0008150,GO:0008152,GO:0009653,GO:0009791,GO:0009888,GO:0009908,GO:0009909,GO:0009933,GO:0009965,GO:0009987,GO:0010015,GO:0010016,GO:0010051,GO:0010073,GO:0010075,GO:0010082,GO:0010305,GO:0010338,GO:0010358,GO:0016018,GO:0016604,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019222,GO:0019538,GO:0022414,GO:0022622,GO:0031056,GO:0031060,GO:0031323,GO:0031399,GO:0031974,GO:0031981,GO:0032268,GO:0032501,GO:0032502,GO:0032991,GO:0033043,GO:0033044,GO:0033218,GO:0036211,GO:0040008,GO:0042277,GO:0042393,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0048364,GO:0048366,GO:0048367,GO:0048437,GO:0048438,GO:0048440,GO:0048442,GO:0048443,GO:0048444,GO:0048447,GO:0048449,GO:0048453,GO:0048464,GO:0048466,GO:0048467,GO:0048507,GO:0048509,GO:0048532,GO:0048580,GO:0048608,GO:0048638,GO:0048646,GO:0048731,GO:0048827,GO:0048831,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0051171,GO:0051239,GO:0051246,GO:0060255,GO:0061458,GO:0065007,GO:0070013,GO:0071013,GO:0071704,GO:0080090,GO:0090567,GO:0090696,GO:0090697,GO:0090698,GO:0099402,GO:0140096,GO:1901564,GO:1902275,GO:1902494,GO:1905392,GO:1905393,GO:1990904,GO:2000026,GO:2000241,GO:2000280
Evalue1.3e-100
EggNOG OGsKOG0882@1|root,KOG0882@2759|Eukaryota,37I32@33090|Viridiplantae,3GCZX@35493|Streptophyta,44C5Z@71274|asterids
EC5.2.1.8
DescriptionCyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
COG categoryO
BRITEko00000,ko01000,ko03041,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9862Ggra9862Gracilaria gracilis GNS1m malegenetig00000170_pilon 153916..156070 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9862.t1Ggra9862.t1Gracilaria gracilis GNS1m malepolypeptidetig00000170_pilon 153916..156070 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9862.t1.start1Ggra9862.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000170_pilon 153916..153918 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9862.t1.CDS1Ggra9862.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000170_pilon 153916..155493 +
Ggra9862.t1.CDS2Ggra9862.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000170_pilon 155622..155679 +
Ggra9862.t1.CDS3Ggra9862.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000170_pilon 155955..156070 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9862.t1.exon1Ggra9862.t1.exon1Gracilaria gracilis GNS1m maleexontig00000170_pilon 153916..155493 +
Ggra9862.t1.exon2Ggra9862.t1.exon2Gracilaria gracilis GNS1m maleexontig00000170_pilon 155622..155679 +
Ggra9862.t1.exon3Ggra9862.t1.exon3Gracilaria gracilis GNS1m maleexontig00000170_pilon 155955..156070 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9862.t1.intron1Ggra9862.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000170_pilon 155494..155621 +
Ggra9862.t1.intron2Ggra9862.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000170_pilon 155680..155954 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9862.t1.stop1Ggra9862.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000170_pilon 156068..156070 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9862.t1 ID=Ggra9862.t1|Name=Ggra9862.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=584bp
MRHPVRSLFTSPTSIIVASLDASLTFWARSTSPPASPSRAQPRAERNGEQ
RAAASSVAAKLHFVKRLLAHRPPLRATALSRRADLLLTTSAVDATLKLFS
TPTFELLHVHALAFDAGAVLLHIEVQSTHVALVSHAKSPSVACFTLPELN
FRGDVTSPHAKPLAFATYNHACSTVISIDDSNVIDYWTVKRDGSSYRLSV
DIPQLQFRSKLRTHLFYFARNALVATALNVSPRGSLFAVVDQHCRIHIFQ
FSTGRRQSVIDLSLTTIRAGVKSNQYEAFGFNRQRFEDRLVTESFLQKHV
QLRAQNNVVFDETGQYVLYATVLGIHMIHVSSNNTVFIFGLNEHRYRFVN
VCVCAADTVDRENGISTSLQPLVVASAFNNQRIFLFGAAQVPAKGRDVMN
EPLYTDSQSLSVSPTELSSKKPLPEQLPKRVTLHTSLGDIMLQLFAQQAP
KTVQNFTTHARNRYYDGVVFHRVIQGFMVQSGDPDGDGTGGESIWGAEFE
DEIDASLKHELGTLSMANAGPNTNGSQFFITCEAAPHLNGKHTVFGKVLK
GMTVVKQIESVKTDKHDKPVEEVRIESISVHSE*
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spliced messenger RNA

>Ggra9862.t1 ID=Ggra9862.t1|Name=Ggra9862.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1752bp|location=Sequence derived from alignment at tig00000170_pilon:153916..156070+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCCACCCGGTCCGCAGCCTGTTTACATCGCCCACGTCCATCATCGT
GGCGTCACTGGATGCCTCGCTCACGTTTTGGGCGCGATCGACCTCCCCGC
CCGCCTCGCCCTCGCGCGCTCAGCCGCGCGCCGAGCGCAACGGCGAGCAA
CGCGCCGCCGCCAGCTCGGTCGCCGCCAAGCTGCACTTCGTGAAGAGATT
GCTGGCTCATAGACCGCCTTTGCGCGCCACCGCGCTGTCGAGGCGCGCCG
ATCTGTTGCTCACCACTAGTGCCGTTGATGCAACGCTCAAGCTGTTCTCC
ACCCCCACTTTCGAACTGCTTCACGTGCATGCGCTGGCGTTTGATGCCGG
CGCTGTGCTTTTGCACATCGAGGTGCAATCCACTCACGTTGCGCTTGTAT
CGCACGCCAAGTCGCCCAGCGTAGCGTGCTTCACTTTGCCGGAGCTCAAC
TTTCGAGGTGATGTAACGAGTCCGCATGCAAAACCGCTCGCGTTTGCCAC
TTATAACCATGCTTGCTCTACAGTAATCTCAATCGACGATTCCAATGTGA
TTGATTACTGGACTGTCAAGCGAGATGGCTCCTCTTATCGGCTTTCTGTT
GACATTCCTCAGTTACAGTTTCGCTCAAAGTTACGCACGCATCTGTTCTA
TTTCGCCAGGAATGCGCTTGTGGCCACTGCGTTGAATGTGTCGCCTCGCG
GCTCTCTGTTTGCTGTTGTTGACCAGCATTGCAGAATTCACATCTTCCAG
TTCTCCACGGGCCGTAGGCAGTCTGTGATTGATCTATCGCTCACAACTAT
CCGCGCAGGTGTGAAGAGCAATCAATACGAAGCGTTTGGCTTCAACCGTC
AACGTTTTGAGGACAGATTGGTCACTGAAAGTTTCCTTCAAAAACATGTG
CAGCTGCGCGCGCAGAATAACGTTGTGTTCGACGAGACCGGTCAGTATGT
GTTGTATGCTACGGTTTTAGGAATCCATATGATCCATGTATCATCCAACA
ACACCGTATTCATATTCGGATTAAATGAACATCGGTATCGATTTGTTAAC
GTTTGCGTATGCGCTGCGGATACCGTTGACCGTGAAAATGGCATTTCCAC
TTCACTGCAGCCTCTTGTTGTCGCGTCGGCGTTCAACAATCAGCGAATTT
TCCTGTTCGGTGCGGCACAAGTACCGGCAAAGGGCAGAGACGTGATGAAT
GAACCGCTTTACACGGACTCACAGTCGCTATCGGTATCTCCTACAGAGCT
TTCCAGCAAGAAACCACTACCGGAACAGCTTCCGAAGCGCGTCACGCTAC
ATACGAGTCTGGGAGACATCATGTTGCAGTTGTTTGCACAACAAGCACCC
AAGACAGTCCAGAACTTTACAACGCATGCACGAAATAGATACTACGATGG
CGTGGTTTTTCATCGTGTGATTCAAGGATTCATGGTGCAAAGTGGTGACC
CGGATGGTGATGGAACTGGTGGTGAGTCTATCTGGGGTGCTGAATTTGAA
GACGAGATTGATGCTTCACTCAAGCATGAATTGGGCACTTTGTCCATGGC
CAACGCAGGACCTAATACAAACGGATCACAATTCTTCATAACGTGCGAGG
CTGCTCCTCACTTGAATGGCAAGCACACCGTTTTTGGCAAAGTTTTGAAG
GGAATGACAGTGGTGAAACAGATTGAGTCCGTAAAAACGGACAAGCACGA
TAAGCCGGTGGAAGAAGTTCGAATTGAAAGCATTTCGGTGCACTCGGAAT
GA
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protein sequence of Ggra9862.t1

>Ggra9862.t1 ID=Ggra9862.t1|Name=Ggra9862.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=584bp
MRHPVRSLFTSPTSIIVASLDASLTFWARSTSPPASPSRAQPRAERNGEQ
RAAASSVAAKLHFVKRLLAHRPPLRATALSRRADLLLTTSAVDATLKLFS
TPTFELLHVHALAFDAGAVLLHIEVQSTHVALVSHAKSPSVACFTLPELN
FRGDVTSPHAKPLAFATYNHACSTVISIDDSNVIDYWTVKRDGSSYRLSV
DIPQLQFRSKLRTHLFYFARNALVATALNVSPRGSLFAVVDQHCRIHIFQ
FSTGRRQSVIDLSLTTIRAGVKSNQYEAFGFNRQRFEDRLVTESFLQKHV
QLRAQNNVVFDETGQYVLYATVLGIHMIHVSSNNTVFIFGLNEHRYRFVN
VCVCAADTVDRENGISTSLQPLVVASAFNNQRIFLFGAAQVPAKGRDVMN
EPLYTDSQSLSVSPTELSSKKPLPEQLPKRVTLHTSLGDIMLQLFAQQAP
KTVQNFTTHARNRYYDGVVFHRVIQGFMVQSGDPDGDGTGGESIWGAEFE
DEIDASLKHELGTLSMANAGPNTNGSQFFITCEAAPHLNGKHTVFGKVLK
GMTVVKQIESVKTDKHDKPVEEVRIESISVHSE*
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mRNA from alignment at tig00000170_pilon:153916..156070+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9862.t1 ID=Ggra9862.t1|Name=Ggra9862.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2155bp|location=Sequence derived from alignment at tig00000170_pilon:153916..156070+ (Gracilaria gracilis GNS1m male)
ATGCGCCACCCGGTCCGCAGCCTGTTTACATCGCCCACGTCCATCATCGT
GGCGTCACTGGATGCCTCGCTCACGTTTTGGGCGCGATCGACCTCCCCGC
CCGCCTCGCCCTCGCGCGCTCAGCCGCGCGCCGAGCGCAACGGCGAGCAA
CGCGCCGCCGCCAGCTCGGTCGCCGCCAAGCTGCACTTCGTGAAGAGATT
GCTGGCTCATAGACCGCCTTTGCGCGCCACCGCGCTGTCGAGGCGCGCCG
ATCTGTTGCTCACCACTAGTGCCGTTGATGCAACGCTCAAGCTGTTCTCC
ACCCCCACTTTCGAACTGCTTCACGTGCATGCGCTGGCGTTTGATGCCGG
CGCTGTGCTTTTGCACATCGAGGTGCAATCCACTCACGTTGCGCTTGTAT
CGCACGCCAAGTCGCCCAGCGTAGCGTGCTTCACTTTGCCGGAGCTCAAC
TTTCGAGGTGATGTAACGAGTCCGCATGCAAAACCGCTCGCGTTTGCCAC
TTATAACCATGCTTGCTCTACAGTAATCTCAATCGACGATTCCAATGTGA
TTGATTACTGGACTGTCAAGCGAGATGGCTCCTCTTATCGGCTTTCTGTT
GACATTCCTCAGTTACAGTTTCGCTCAAAGTTACGCACGCATCTGTTCTA
TTTCGCCAGGAATGCGCTTGTGGCCACTGCGTTGAATGTGTCGCCTCGCG
GCTCTCTGTTTGCTGTTGTTGACCAGCATTGCAGAATTCACATCTTCCAG
TTCTCCACGGGCCGTAGGCAGTCTGTGATTGATCTATCGCTCACAACTAT
CCGCGCAGGTGTGAAGAGCAATCAATACGAAGCGTTTGGCTTCAACCGTC
AACGTTTTGAGGACAGATTGGTCACTGAAAGTTTCCTTCAAAAACATGTG
CAGCTGCGCGCGCAGAATAACGTTGTGTTCGACGAGACCGGTCAGTATGT
GTTGTATGCTACGGTTTTAGGAATCCATATGATCCATGTATCATCCAACA
ACACCGTATTCATATTCGGATTAAATGAACATCGGTATCGATTTGTTAAC
GTTTGCGTATGCGCTGCGGATACCGTTGACCGTGAAAATGGCATTTCCAC
TTCACTGCAGCCTCTTGTTGTCGCGTCGGCGTTCAACAATCAGCGAATTT
TCCTGTTCGGTGCGGCACAAGTACCGGCAAAGGGCAGAGACGTGATGAAT
GAACCGCTTTACACGGACTCACAGTCGCTATCGGTATCTCCTACAGAGCT
TTCCAGCAAGAAACCACTACCGGAACAGCTTCCGAAGCGCGTCACGCTAC
ATACGAGTCTGGGAGACATCATGTTGCAGTTGTTTGCACAACAAGCACCC
AAGACAGTCCAGAACTTTACAACGCATGCACGAAATAGATACTACGATGG
CGTGGTTTTTCATCGTGTGATTCAAGGATTCATGGTGCAAAGTGGTGACC
CGGATGGTGATGGAACTGGTGGTGAGTCTATCTGGGGTGCTGAATTTGAA
GACGAGATTGATGCTTCACTCAAGCATGAATTGGGCACTTTGTCCATGGC
CAACGCAGGACCTAATACAAACGGATCAGTAAGTGTTGCTTTCCTTCCTT
GTTTTCCCATGCCTGAATTGCTGCCTTGGTCTTGTCGATCAGGATGCTCT
GATTGTTGCCACTTTGTTACTGACTCTGCTGCAACTGTGTGTGTCACGTC
TTTCAGCAATTCTTCATAACGTGCGAGGCTGCTCCTCACTTGAATGGCAA
GCACACCGTTTTTGGTAAGTTTATCGACGAAAAACAGACAGCACCTGGCA
TCATGCGGTGAGCGTTGTTTACTGGAGAAGAAAAAAAGAATCGATGAGTT
TCTTTATAAGTATTGCTTATAGCAGTCTGCGTGGACACCCACAGGTACCT
GGCAACAAGGCCTATCATGACACTGACCGACTCTTCCCATTTATTCTTAC
ATTGGTGTCATTCTAACTCCTCTCCCAAAACAATCTGCGCAAACCTCCTA
TGCACGACGCATTATACTTTTGTGGGTTGGGGATTCCAGGCAAAGTTTTG
AAGGGAATGACAGTGGTGAAACAGATTGAGTCCGTAAAAACGGACAAGCA
CGATAAGCCGGTGGAAGAAGTTCGAATTGAAAGCATTTCGGTGCACTCGG
AATGA
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Coding sequence (CDS) from alignment at tig00000170_pilon:153916..156070+

>Ggra9862.t1 ID=Ggra9862.t1|Name=Ggra9862.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1752bp|location=Sequence derived from alignment at tig00000170_pilon:153916..156070+ (Gracilaria gracilis GNS1m male)
ATGCGCCACCCGGTCCGCAGCCTGTTTACATCGCCCACGTCCATCATCGT
GGCGTCACTGGATGCCTCGCTCACGTTTTGGGCGCGATCGACCTCCCCGC
CCGCCTCGCCCTCGCGCGCTCAGCCGCGCGCCGAGCGCAACGGCGAGCAA
CGCGCCGCCGCCAGCTCGGTCGCCGCCAAGCTGCACTTCGTGAAGAGATT
GCTGGCTCATAGACCGCCTTTGCGCGCCACCGCGCTGTCGAGGCGCGCCG
ATCTGTTGCTCACCACTAGTGCCGTTGATGCAACGCTCAAGCTGTTCTCC
ACCCCCACTTTCGAACTGCTTCACGTGCATGCGCTGGCGTTTGATGCCGG
CGCTGTGCTTTTGCACATCGAGGTGCAATCCACTCACGTTGCGCTTGTAT
CGCACGCCAAGTCGCCCAGCGTAGCGTGCTTCACTTTGCCGGAGCTCAAC
TTTCGAGGTGATGTAACGAGTCCGCATGCAAAACCGCTCGCGTTTGCCAC
TTATAACCATGCTTGCTCTACAGTAATCTCAATCGACGATTCCAATGTGA
TTGATTACTGGACTGTCAAGCGAGATGGCTCCTCTTATCGGCTTTCTGTT
GACATTCCTCAGTTACAGTTTCGCTCAAAGTTACGCACGCATCTGTTCTA
TTTCGCCAGGAATGCGCTTGTGGCCACTGCGTTGAATGTGTCGCCTCGCG
GCTCTCTGTTTGCTGTTGTTGACCAGCATTGCAGAATTCACATCTTCCAG
TTCTCCACGGGCCGTAGGCAGTCTGTGATTGATCTATCGCTCACAACTAT
CCGCGCAGGTGTGAAGAGCAATCAATACGAAGCGTTTGGCTTCAACCGTC
AACGTTTTGAGGACAGATTGGTCACTGAAAGTTTCCTTCAAAAACATGTG
CAGCTGCGCGCGCAGAATAACGTTGTGTTCGACGAGACCGGTCAGTATGT
GTTGTATGCTACGGTTTTAGGAATCCATATGATCCATGTATCATCCAACA
ACACCGTATTCATATTCGGATTAAATGAACATCGGTATCGATTTGTTAAC
GTTTGCGTATGCGCTGCGGATACCGTTGACCGTGAAAATGGCATTTCCAC
TTCACTGCAGCCTCTTGTTGTCGCGTCGGCGTTCAACAATCAGCGAATTT
TCCTGTTCGGTGCGGCACAAGTACCGGCAAAGGGCAGAGACGTGATGAAT
GAACCGCTTTACACGGACTCACAGTCGCTATCGGTATCTCCTACAGAGCT
TTCCAGCAAGAAACCACTACCGGAACAGCTTCCGAAGCGCGTCACGCTAC
ATACGAGTCTGGGAGACATCATGTTGCAGTTGTTTGCACAACAAGCACCC
AAGACAGTCCAGAACTTTACAACGCATGCACGAAATAGATACTACGATGG
CGTGGTTTTTCATCGTGTGATTCAAGGATTCATGGTGCAAAGTGGTGACC
CGGATGGTGATGGAACTGGTGGTGAGTCTATCTGGGGTGCTGAATTTGAA
GACGAGATTGATGCTTCACTCAAGCATGAATTGGGCACTTTGTCCATGGC
CAACGCAGGACCTAATACAAACGGATCACAATTCTTCATAACGTGCGAGG
CTGCTCCTCACTTGAATGGCAAGCACACCGTTTTTGGCAAAGTTTTGAAG
GGAATGACAGTGGTGAAACAGATTGAGTCCGTAAAAACGGACAAGCACGA
TAAGCCGGTGGAAGAAGTTCGAATTGAAAGCATTTCGGTGCACTCGGAAT
GA
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