Ggra986.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra986.t1
Unique NameGgra986.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length267
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000027_piloncontigtig00000027_pilon:66303..67103 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1414720.CBYM010000018_gene3007
PFAMsCAP,CW_binding_1
Max annot lvl186801|Clostridia
Evalue3.04e-13
EggNOG OGsCOG2340@1|root,COG2340@2|Bacteria,1V6GZ@1239|Firmicutes,24I20@186801|Clostridia,36VHI@31979|Clostridiaceae
DescriptionCysteine-rich secretory protein family
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra986Ggra986Gracilaria gracilis GNS1m malegenetig00000027_pilon 66303..67103 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra986.t1.stop1Ggra986.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000027_pilon 66303..66305 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra986.t1.CDS1Ggra986.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000027_pilon 66303..67103 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra986.t1.exon1Ggra986.t1.exon1Gracilaria gracilis GNS1m maleexontig00000027_pilon 66303..67103 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra986.t1.start1Ggra986.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000027_pilon 67101..67103 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra986.t1Ggra986.t1Gracilaria gracilis GNS1m malepolypeptidetig00000027_pilon 66303..67103 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra986.t1 ID=Ggra986.t1|Name=Ggra986.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=267bp
MTILKVFLVFAIAANAVAFPCRTMGGTTVYPYAYFTANPMRNKDARLIIG
TAPEASSESDEDDMAPSPAPVTVMETTTMPPTTTTMPPTTTMPRTTRPRP
STPRTRAPTTTSATTTTMPPTTMPPTTRPPSTMSTGGSMPPNDSSAKQIC
VACAKENFDEVNRYRASLGLSQMRWDDKMAAEAAEHSKDMFERDYFEHSD
LPYWENIAYNWGTNKWADIADGFFSQWKKSPGHDRNMKTSTHVCGGVGIY
GDGNKFYGTQVFSNKC*
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spliced messenger RNA

>Ggra986.t1 ID=Ggra986.t1|Name=Ggra986.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=801bp|location=Sequence derived from alignment at tig00000027_pilon:66303..67103- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAATCCTCAAAGTGTTTCTTGTCTTTGCAATTGCTGCTAATGCCGT
GGCATTCCCGTGCCGTACCATGGGGGGCACTACAGTCTACCCGTATGCAT
ATTTCACTGCTAATCCGATGCGTAACAAAGATGCGAGGTTAATTATCGGT
ACAGCCCCGGAGGCTTCTTCAGAATCTGATGAAGATGACATGGCTCCAAG
CCCCGCACCGGTCACTGTTATGGAAACTACCACCATGCCTCCTACAACTA
CTACTATGCCACCAACCACAACCATGCCACGGACTACCCGACCGAGGCCG
AGTACCCCTCGAACGAGGGCACCGACAACCACCTCTGCGACAACCACCAC
CATGCCTCCGACCACCATGCCTCCGACCACCAGGCCTCCGTCGACAATGA
GCACAGGAGGGTCTATGCCTCCAAACGATTCCAGCGCGAAGCAAATCTGT
GTCGCATGCGCCAAGGAGAACTTTGATGAGGTGAATCGATACAGAGCCAG
CCTTGGGCTCTCTCAGATGAGATGGGACGACAAGATGGCTGCTGAAGCGG
CTGAACACAGCAAGGATATGTTCGAACGAGACTACTTTGAGCACAGTGAC
CTTCCGTACTGGGAAAACATTGCGTACAACTGGGGAACGAACAAGTGGGC
TGATATCGCTGATGGATTCTTCTCTCAGTGGAAGAAGAGCCCTGGACATG
ACCGCAACATGAAGACTTCCACGCATGTGTGCGGTGGTGTTGGAATTTAT
GGTGATGGTAACAAGTTCTATGGCACACAAGTGTTCTCGAACAAGTGCTA
G
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protein sequence of Ggra986.t1

>Ggra986.t1 ID=Ggra986.t1|Name=Ggra986.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=267bp
MTILKVFLVFAIAANAVAFPCRTMGGTTVYPYAYFTANPMRNKDARLIIG
TAPEASSESDEDDMAPSPAPVTVMETTTMPPTTTTMPPTTTMPRTTRPRP
STPRTRAPTTTSATTTTMPPTTMPPTTRPPSTMSTGGSMPPNDSSAKQIC
VACAKENFDEVNRYRASLGLSQMRWDDKMAAEAAEHSKDMFERDYFEHSD
LPYWENIAYNWGTNKWADIADGFFSQWKKSPGHDRNMKTSTHVCGGVGIY
GDGNKFYGTQVFSNKC*
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mRNA from alignment at tig00000027_pilon:66303..67103-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra986.t1 ID=Ggra986.t1|Name=Ggra986.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=801bp|location=Sequence derived from alignment at tig00000027_pilon:66303..67103- (Gracilaria gracilis GNS1m male)
ATGACAATCCTCAAAGTGTTTCTTGTCTTTGCAATTGCTGCTAATGCCGT
GGCATTCCCGTGCCGTACCATGGGGGGCACTACAGTCTACCCGTATGCAT
ATTTCACTGCTAATCCGATGCGTAACAAAGATGCGAGGTTAATTATCGGT
ACAGCCCCGGAGGCTTCTTCAGAATCTGATGAAGATGACATGGCTCCAAG
CCCCGCACCGGTCACTGTTATGGAAACTACCACCATGCCTCCTACAACTA
CTACTATGCCACCAACCACAACCATGCCACGGACTACCCGACCGAGGCCG
AGTACCCCTCGAACGAGGGCACCGACAACCACCTCTGCGACAACCACCAC
CATGCCTCCGACCACCATGCCTCCGACCACCAGGCCTCCGTCGACAATGA
GCACAGGAGGGTCTATGCCTCCAAACGATTCCAGCGCGAAGCAAATCTGT
GTCGCATGCGCCAAGGAGAACTTTGATGAGGTGAATCGATACAGAGCCAG
CCTTGGGCTCTCTCAGATGAGATGGGACGACAAGATGGCTGCTGAAGCGG
CTGAACACAGCAAGGATATGTTCGAACGAGACTACTTTGAGCACAGTGAC
CTTCCGTACTGGGAAAACATTGCGTACAACTGGGGAACGAACAAGTGGGC
TGATATCGCTGATGGATTCTTCTCTCAGTGGAAGAAGAGCCCTGGACATG
ACCGCAACATGAAGACTTCCACGCATGTGTGCGGTGGTGTTGGAATTTAT
GGTGATGGTAACAAGTTCTATGGCACACAAGTGTTCTCGAACAAGTGCTA
G
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Coding sequence (CDS) from alignment at tig00000027_pilon:66303..67103-

>Ggra986.t1 ID=Ggra986.t1|Name=Ggra986.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=801bp|location=Sequence derived from alignment at tig00000027_pilon:66303..67103- (Gracilaria gracilis GNS1m male)
ATGACAATCCTCAAAGTGTTTCTTGTCTTTGCAATTGCTGCTAATGCCGT
GGCATTCCCGTGCCGTACCATGGGGGGCACTACAGTCTACCCGTATGCAT
ATTTCACTGCTAATCCGATGCGTAACAAAGATGCGAGGTTAATTATCGGT
ACAGCCCCGGAGGCTTCTTCAGAATCTGATGAAGATGACATGGCTCCAAG
CCCCGCACCGGTCACTGTTATGGAAACTACCACCATGCCTCCTACAACTA
CTACTATGCCACCAACCACAACCATGCCACGGACTACCCGACCGAGGCCG
AGTACCCCTCGAACGAGGGCACCGACAACCACCTCTGCGACAACCACCAC
CATGCCTCCGACCACCATGCCTCCGACCACCAGGCCTCCGTCGACAATGA
GCACAGGAGGGTCTATGCCTCCAAACGATTCCAGCGCGAAGCAAATCTGT
GTCGCATGCGCCAAGGAGAACTTTGATGAGGTGAATCGATACAGAGCCAG
CCTTGGGCTCTCTCAGATGAGATGGGACGACAAGATGGCTGCTGAAGCGG
CTGAACACAGCAAGGATATGTTCGAACGAGACTACTTTGAGCACAGTGAC
CTTCCGTACTGGGAAAACATTGCGTACAACTGGGGAACGAACAAGTGGGC
TGATATCGCTGATGGATTCTTCTCTCAGTGGAAGAAGAGCCCTGGACATG
ACCGCAACATGAAGACTTCCACGCATGTGTGCGGTGGTGTTGGAATTTAT
GGTGATGGTAACAAGTTCTATGGCACACAAGTGTTCTCGAACAAGTGCTA
G
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