Ggra9858.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9858.t1
Unique NameGgra9858.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length278
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000170_piloncontigtig00000170_pilon:145103..146347 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9858Ggra9858Gracilaria gracilis GNS1m malegenetig00000170_pilon 145103..146347 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9858.t1Ggra9858.t1Gracilaria gracilis GNS1m malepolypeptidetig00000170_pilon 145103..146347 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9858.t1.start1Ggra9858.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000170_pilon 145103..145105 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9858.t1.CDS1Ggra9858.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000170_pilon 145103..145366 +
Ggra9858.t1.CDS2Ggra9858.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000170_pilon 145778..146347 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9858.t1.exon1Ggra9858.t1.exon1Gracilaria gracilis GNS1m maleexontig00000170_pilon 145103..145366 +
Ggra9858.t1.exon2Ggra9858.t1.exon2Gracilaria gracilis GNS1m maleexontig00000170_pilon 145778..146347 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9858.t1.intron1Ggra9858.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000170_pilon 145367..145777 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9858.t1.stop1Ggra9858.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000170_pilon 146345..146347 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9858.t1 ID=Ggra9858.t1|Name=Ggra9858.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=278bp
MDGATTDAFADWGLMPICPIMPEADVAPIDADLDWSQYPSLSDAMHVSLD
GELANPLETVARRTPELNLPHSPSHLAPATPIDQHHSPVVMSPPPRDERG
VALTPASSSSGLGVVKTIVKTEPSMKRAVSKPRTPLAKATLSLKAKRERE
AALFPKEMLVDLEGTTSAQVRKMNQNQRELVLFKRKLRNRESARRSRQKR
QAVMGELQTEVDELRKIAMGTADAALNLNRENRELRRLLHQREQRIVMLE
EENDRLKRRVTKEDLHSSVSIERKLGA*
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spliced messenger RNA

>Ggra9858.t1 ID=Ggra9858.t1|Name=Ggra9858.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=834bp|location=Sequence derived from alignment at tig00000170_pilon:145103..146347+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGGTGCTACCACCGACGCGTTCGCCGATTGGGGGCTCATGCCCAT
TTGCCCCATCATGCCCGAGGCCGATGTCGCTCCCATCGATGCCGACCTCG
ACTGGTCGCAGTACCCTTCCCTCTCCGATGCTATGCACGTCAGTCTGGAC
GGCGAATTGGCAAACCCTCTGGAAACCGTCGCCCGACGAACCCCAGAGCT
CAACTTGCCACATTCCCCGTCGCACCTCGCGCCCGCCACCCCCATCGACC
AACATCACTCCCCCgttgtaatgtcgccgccgcctCGCGACGAGAGGGGC
GTTGCCTTGACGCCCGCCAGTTCTTCGTCGGGCTTGGGCGTGGTTAAAAC
CATCGTCAAGACCGAGCCTTCTATGAAGCGCGCTGTGTCCAAGCCGCGAA
CCCCGCTTGCGAAGGCAACCCTATCGCTCAAGGCGAAGAGGGAACGGGAG
GCTGCCTTGTTCCCAAAGGAGATGCTTGTCGATTTGGAGGGGACCACGTC
TGCTCAGGTCAGGAAGATGAACCAGAACCAGAGGGAGTTGGTTCTCTTCA
AGAGAAAGCTGCGAAACAGAGAGTCTGCAAGACGGTCGAGGCAGAAGAGG
CAGGCCGTCATGGGTGAGCTCCAGACTGAGGTCGACGAGCTTCGCAAGAT
TGCCATGGGCACGGCTGACGCTGCCCTTAACTTGAATCGGGAGAACCGGG
AACTCAGGAGACTCTTGCATCAGCGTGAACAACGCATCGTGATGCTTGAG
GAAGAGAACGATCGGTTGAAGAGACGTGTGACAAAAGAAGACCTACATTC
GTCAGTTTCCATTGAACGCAAGCTTGGTGCGTGA
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protein sequence of Ggra9858.t1

>Ggra9858.t1 ID=Ggra9858.t1|Name=Ggra9858.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=278bp
MDGATTDAFADWGLMPICPIMPEADVAPIDADLDWSQYPSLSDAMHVSLD
GELANPLETVARRTPELNLPHSPSHLAPATPIDQHHSPVVMSPPPRDERG
VALTPASSSSGLGVVKTIVKTEPSMKRAVSKPRTPLAKATLSLKAKRERE
AALFPKEMLVDLEGTTSAQVRKMNQNQRELVLFKRKLRNRESARRSRQKR
QAVMGELQTEVDELRKIAMGTADAALNLNRENRELRRLLHQREQRIVMLE
EENDRLKRRVTKEDLHSSVSIERKLGA*
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mRNA from alignment at tig00000170_pilon:145103..146347+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9858.t1 ID=Ggra9858.t1|Name=Ggra9858.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1245bp|location=Sequence derived from alignment at tig00000170_pilon:145103..146347+ (Gracilaria gracilis GNS1m male)
ATGGACGGTGCTACCACCGACGCGTTCGCCGATTGGGGGCTCATGCCCAT
TTGCCCCATCATGCCCGAGGCCGATGTCGCTCCCATCGATGCCGACCTCG
ACTGGTCGCAGTACCCTTCCCTCTCCGATGCTATGCACGTCAGTCTGGAC
GGCGAATTGGCAAACCCTCTGGAAACCGTCGCCCGACGAACCCCAGAGCT
CAACTTGCCACATTCCCCGTCGCACCTCGCGCCCGCCACCCCCATCGACC
AACATCACTCCCCCGTGTGCCCGCCCCCCACTCCCACTGTAGCTGCATCC
GTGCTTcacaccccctctcatacctcaccgcgtccgcagcagcagctgcc
gccgcaatcgcaactaccaccgcaggcgcgcccgcaaccgcagccgcaac
cacggccacaaccgcagtcacagccgcagccgcagtcgcagtcgcagccg
caaccgcagccgcagtcgcagtcgcagccgcagccgcaaccgcagccgca
gccgcagcagacaccgcagcaacggagggacagcgggagccagaaagcgc
ttgacgctcaggtgcgctcgttgatcagtcagtcgcccccggtaggcgaa
gcccgcagagtgtcttccccggttgtggagcgcgtgccatctccgcccgt
gtccgtctcggtgtgtcggacggaggttgtaatgtcgccgccgcctCGCG
ACGAGAGGGGCGTTGCCTTGACGCCCGCCAGTTCTTCGTCGGGCTTGGGC
GTGGTTAAAACCATCGTCAAGACCGAGCCTTCTATGAAGCGCGCTGTGTC
CAAGCCGCGAACCCCGCTTGCGAAGGCAACCCTATCGCTCAAGGCGAAGA
GGGAACGGGAGGCTGCCTTGTTCCCAAAGGAGATGCTTGTCGATTTGGAG
GGGACCACGTCTGCTCAGGTCAGGAAGATGAACCAGAACCAGAGGGAGTT
GGTTCTCTTCAAGAGAAAGCTGCGAAACAGAGAGTCTGCAAGACGGTCGA
GGCAGAAGAGGCAGGCCGTCATGGGTGAGCTCCAGACTGAGGTCGACGAG
CTTCGCAAGATTGCCATGGGCACGGCTGACGCTGCCCTTAACTTGAATCG
GGAGAACCGGGAACTCAGGAGACTCTTGCATCAGCGTGAACAACGCATCG
TGATGCTTGAGGAAGAGAACGATCGGTTGAAGAGACGTGTGACAAAAGAA
GACCTACATTCGTCAGTTTCCATTGAACGCAAGCTTGGTGCGTGA
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Coding sequence (CDS) from alignment at tig00000170_pilon:145103..146347+

>Ggra9858.t1 ID=Ggra9858.t1|Name=Ggra9858.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=834bp|location=Sequence derived from alignment at tig00000170_pilon:145103..146347+ (Gracilaria gracilis GNS1m male)
ATGGACGGTGCTACCACCGACGCGTTCGCCGATTGGGGGCTCATGCCCAT
TTGCCCCATCATGCCCGAGGCCGATGTCGCTCCCATCGATGCCGACCTCG
ACTGGTCGCAGTACCCTTCCCTCTCCGATGCTATGCACGTCAGTCTGGAC
GGCGAATTGGCAAACCCTCTGGAAACCGTCGCCCGACGAACCCCAGAGCT
CAACTTGCCACATTCCCCGTCGCACCTCGCGCCCGCCACCCCCATCGACC
AACATCACTCCCCCgttgtaatgtcgccgccgcctCGCGACGAGAGGGGC
GTTGCCTTGACGCCCGCCAGTTCTTCGTCGGGCTTGGGCGTGGTTAAAAC
CATCGTCAAGACCGAGCCTTCTATGAAGCGCGCTGTGTCCAAGCCGCGAA
CCCCGCTTGCGAAGGCAACCCTATCGCTCAAGGCGAAGAGGGAACGGGAG
GCTGCCTTGTTCCCAAAGGAGATGCTTGTCGATTTGGAGGGGACCACGTC
TGCTCAGGTCAGGAAGATGAACCAGAACCAGAGGGAGTTGGTTCTCTTCA
AGAGAAAGCTGCGAAACAGAGAGTCTGCAAGACGGTCGAGGCAGAAGAGG
CAGGCCGTCATGGGTGAGCTCCAGACTGAGGTCGACGAGCTTCGCAAGAT
TGCCATGGGCACGGCTGACGCTGCCCTTAACTTGAATCGGGAGAACCGGG
AACTCAGGAGACTCTTGCATCAGCGTGAACAACGCATCGTGATGCTTGAG
GAAGAGAACGATCGGTTGAAGAGACGTGTGACAAAAGAAGACCTACATTC
GTCAGTTTCCATTGAACGCAAGCTTGGTGCGTGA
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