Ggra9857.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9857.t1
Unique NameGgra9857.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length381
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000170_piloncontigtig00000170_pilon:143148..144995 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4533.OB07G17440.1
Max annot lvl35493|Streptophyta
Evalue7.06e-08
EggNOG OGs28P4R@1|root,2QVRI@2759|Eukaryota,37MWF@33090|Viridiplantae,3G8WT@35493|Streptophyta,3KXIQ@4447|Liliopsida,3IC0B@38820|Poales
Descriptionzinc transporter
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9857Ggra9857Gracilaria gracilis GNS1m malegenetig00000170_pilon 143148..144995 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9857.t1Ggra9857.t1Gracilaria gracilis GNS1m malepolypeptidetig00000170_pilon 143148..144995 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9857.t1.start1Ggra9857.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000170_pilon 143148..143150 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9857.t1.CDS1Ggra9857.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000170_pilon 143148..144229 +
Ggra9857.t1.CDS2Ggra9857.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000170_pilon 144829..144873 +
Ggra9857.t1.CDS3Ggra9857.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000170_pilon 144980..144995 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9857.t1.exon1Ggra9857.t1.exon1Gracilaria gracilis GNS1m maleexontig00000170_pilon 143148..144229 +
Ggra9857.t1.exon2Ggra9857.t1.exon2Gracilaria gracilis GNS1m maleexontig00000170_pilon 144829..144873 +
Ggra9857.t1.exon3Ggra9857.t1.exon3Gracilaria gracilis GNS1m maleexontig00000170_pilon 144980..144995 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9857.t1.intron1Ggra9857.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000170_pilon 144230..144828 +
Ggra9857.t1.intron2Ggra9857.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000170_pilon 144874..144979 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9857.t1.stop1Ggra9857.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000170_pilon 144993..144995 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9857.t1 ID=Ggra9857.t1|Name=Ggra9857.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=381bp
MPNNLVLPGASASKSKSKSSSRASSGGASSRTRAPALPYVPALALFTAAK
ACRVFAAFASFAFLRSGVSLFVYLTCVTFGASVCLLALQRPWKGKRIGAK
RARRTLGAGFISAVTLATWTAGLRAAGPLRALLVDGAELPLLYVFALLRR
RELPERRKTRGAVLMLLAYVLLLWDASGHVPNVQQLEQSALGQSAEHTLD
RFAHLTHLKDDAPLGATSGGARRRLQRLVQRFDVDGHASVSHDWKRTPTT
WRCELGVLLVLAASIMMQSSRAFTRRLATELGGAKRYFALGTTAASCWLA
LAALALSALWGNGYGSADSAGDTVRWSGVGVLWLVVPYYVRAVVSTAIST
RVVLQGGVVLPASAVSARCASGGPPSTPLV*
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spliced messenger RNA

>Ggra9857.t1 ID=Ggra9857.t1|Name=Ggra9857.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1143bp|location=Sequence derived from alignment at tig00000170_pilon:143148..144995+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCAACAACTTGGTGCTCCCCGGCGCGTCCGCGTCCAAGTCCAAGTC
CAAgtcgtcgtcgcgcgcgtcgtccggcggcgcgtcgtcgcgcacacgcg
cgccggcactgccgtacgtgccggcgctcgcgcTGTTCACGGCCGCCAAG
GCGTGTCGTGTGTTCGCGGCCTTTGCGTCGTTTGCCTTTCTGCGCAGCGG
CGTTTCGTTGTTTGTGTACTTGACGTGCGTTACGTTCGGTGCCAGCGTGT
GTCTCTTGGCGCTGCAGCGCCCGTGGAAGGGGAAGCGTATAGGAGCGAAG
CGCGCGCGGAGGACGTTGGGCGCGGGCTTCATTTCGGCCGTCACGCTTGC
CACTTGGACGGCTGGGCTTAGGGCCGCCGGCCCGCTGAGGGCGTTGCTGG
TGGATGGCGCCGAACTGCCGCTGCTGTACGTGTTTGCGTTGCTCAGACGC
CGCGAACTGCCGGAGCGACGGAAGACAAGAGGCGCCGTGCTCATGCTTTT
AGCGTACGTGCTGCTTCTGTGGGACGCGTCTGGCCATGTGCCCAATGTAC
AACAACTGGAACAATCTGCTCTTGGTCAAAGCGCAGAGCACACGCTCGAC
CGCTTCGCACATCTCACCCACCTCAAGGACGACGCGCCGCTGGGCGCCAC
GTCCGGCGGCGCGCGGCGGCGATTGCAGCGACTGGTGCAACGCTTCGACG
TGGATGGGCATGCATCCGTCTCGCACGATTGGAAACGTACGCCCACCACA
TGGCGCTGTGAACTGGGCGTGCTGCTCGTACTGGCGGCGTCCATCATGAT
GCAGTCTTCGCGCGCATTCACGCGCCGTCTGGCCACCGAACTGGGCGGCG
CCAAGCGATACTTTGCGCTCGGAACGACGGCGGCCAGCTGCTGGCTGGCG
CTAGCGGCTCTCGCACTGTCGGCGTTGTGGGGCAATGGGTACGGCAGCGC
CGACAGCGCCGGCGACACTGTGCGGTGGAGCGGCGTGGGCGTGCTTTGGT
TGGTGGTGCCGTACTACGTGCGCGCAGTTGTGAGCACGGCCATCTCGACG
CGCGTGGTGCTGCAGGGTGGCGTGGTGCTGCCCGCTTCCGCCGTCTCTGC
GCGCTGCGCGTCTGGTGGTCCACCAAGCACGCCCCTTGTTTAA
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protein sequence of Ggra9857.t1

>Ggra9857.t1 ID=Ggra9857.t1|Name=Ggra9857.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=381bp
MPNNLVLPGASASKSKSKSSSRASSGGASSRTRAPALPYVPALALFTAAK
ACRVFAAFASFAFLRSGVSLFVYLTCVTFGASVCLLALQRPWKGKRIGAK
RARRTLGAGFISAVTLATWTAGLRAAGPLRALLVDGAELPLLYVFALLRR
RELPERRKTRGAVLMLLAYVLLLWDASGHVPNVQQLEQSALGQSAEHTLD
RFAHLTHLKDDAPLGATSGGARRRLQRLVQRFDVDGHASVSHDWKRTPTT
WRCELGVLLVLAASIMMQSSRAFTRRLATELGGAKRYFALGTTAASCWLA
LAALALSALWGNGYGSADSAGDTVRWSGVGVLWLVVPYYVRAVVSTAIST
RVVLQGGVVLPASAVSARCASGGPPSTPLV*
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mRNA from alignment at tig00000170_pilon:143148..144995+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9857.t1 ID=Ggra9857.t1|Name=Ggra9857.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1848bp|location=Sequence derived from alignment at tig00000170_pilon:143148..144995+ (Gracilaria gracilis GNS1m male)
ATGCCCAACAACTTGGTGCTCCCCGGCGCGTCCGCGTCCAAGTCCAAGTC
CAAgtcgtcgtcgcgcgcgtcgtccggcggcgcgtcgtcgcgcacacgcg
cgccggcactgccgtacgtgccggcgctcgcgcTGTTCACGGCCGCCAAG
GCGTGTCGTGTGTTCGCGGCCTTTGCGTCGTTTGCCTTTCTGCGCAGCGG
CGTTTCGTTGTTTGTGTACTTGACGTGCGTTACGTTCGGTGCCAGCGTGT
GTCTCTTGGCGCTGCAGCGCCCGTGGAAGGGGAAGCGTATAGGAGCGAAG
CGCGCGCGGAGGACGTTGGGCGCGGGCTTCATTTCGGCCGTCACGCTTGC
CACTTGGACGGCTGGGCTTAGGGCCGCCGGCCCGCTGAGGGCGTTGCTGG
TGGATGGCGCCGAACTGCCGCTGCTGTACGTGTTTGCGTTGCTCAGACGC
CGCGAACTGCCGGAGCGACGGAAGACAAGAGGCGCCGTGCTCATGCTTTT
AGCGTACGTGCTGCTTCTGTGGGACGCGTCTGGCCATGTGCCCAATGTAC
AACAACTGGAACAATCTGCTCTTGGTCAAAGCGCAGAGCACACGCTCGAC
CGCTTCGCACATCTCACCCACCTCAAGGACGACGCGCCGCTGGGCGCCAC
GTCCGGCGGCGCGCGGCGGCGATTGCAGCGACTGGTGCAACGCTTCGACG
TGGATGGGCATGCATCCGTCTCGCACGATTGGAAACGTACGCCCACCACA
TGGCGCTGTGAACTGGGCGTGCTGCTCGTACTGGCGGCGTCCATCATGAT
GCAGTCTTCGCGCGCATTCACGCGCCGTCTGGCCACCGAACTGGGCGGCG
CCAAGCGATACTTTGCGCTCGGAACGACGGCGGCCAGCTGCTGGCTGGCG
CTAGCGGCTCTCGCACTGTCGGCGTTGTGGGGCAATGGGTACGGCAGCGC
CGACAGCGCCGGCGACACTGTGCGGTGGAGCGGCGTGGGCGTGCTTTGGT
TGGTGGTGCCGTACTACGTGCGCGCAGTTGTGAGCACGGCCATCTCGACG
CGCGTGGTGCTGCAGGGTGGCGTGGTGCTGCCGTTCGTGATGGCGGTggt
gggatgcgcggccgtgggcgcggagcggtgcgctggcggcgcgagctggc
TGCTTTGCGCGGCGTTTGTGCTCAACGCGTGCGGCGTGTCGCTGATGATG
GCGGGCGGCGCGCGGAGGGCCATATCGGAACTGCCGCTGGACGGCGCCGG
TGGAGGGAGCTCGGGCGGCTTAGACGGCGGCGCGCGCTAGCGCTGGAGGC
TGCGCGAGTATCTGTGAGTGAGTGATTCAGCAGGTGGGAGCCGGGCATAA
GCGCGCGCGCGCGCGCGGATGCGGCGCGGCGCTGGGGGAgacgacgagac
gacgagacgacggtcgacgtagcgacggggacgCGCGCGGATCGGCGCGT
GCACTTGCGCGGCTGCGCGCGGCGACGTGGCGTGGCACACGATGGCGCGC
GTGGTTGGACGCGGCGCGCGTCGAAGCGTCCAGTCGCGCACGTTGCGAGG
TTGGACACGTGGGCATGGCGCGGCTCGAGAGATGCGCTGCGCGCGCTGCT
TGGCACCTTTTGCCTGCGCTCGCCTTTTTTTAGGCCTCTTTTGTACGCCT
TCGCTTCGCTTTTCTTTCTTTTGCCCTGCAGCGCTTCCGCCGTCTCTGCG
CGCTGCGCGTCTGGTGGTCCACCAAGGTACTTTCTCCCCTTCCGGAACCT
CCCCCTCAGCCCCTTCCCCTCCGTGCAGCTCGTCGCCGTTGTTTGTTGCT
GTTGCTAACTTTTTGTTTACCTTCGTCGGTAGCACGCCCCTTGTTTAA
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Coding sequence (CDS) from alignment at tig00000170_pilon:143148..144995+

>Ggra9857.t1 ID=Ggra9857.t1|Name=Ggra9857.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1143bp|location=Sequence derived from alignment at tig00000170_pilon:143148..144995+ (Gracilaria gracilis GNS1m male)
ATGCCCAACAACTTGGTGCTCCCCGGCGCGTCCGCGTCCAAGTCCAAGTC
CAAgtcgtcgtcgcgcgcgtcgtccggcggcgcgtcgtcgcgcacacgcg
cgccggcactgccgtacgtgccggcgctcgcgcTGTTCACGGCCGCCAAG
GCGTGTCGTGTGTTCGCGGCCTTTGCGTCGTTTGCCTTTCTGCGCAGCGG
CGTTTCGTTGTTTGTGTACTTGACGTGCGTTACGTTCGGTGCCAGCGTGT
GTCTCTTGGCGCTGCAGCGCCCGTGGAAGGGGAAGCGTATAGGAGCGAAG
CGCGCGCGGAGGACGTTGGGCGCGGGCTTCATTTCGGCCGTCACGCTTGC
CACTTGGACGGCTGGGCTTAGGGCCGCCGGCCCGCTGAGGGCGTTGCTGG
TGGATGGCGCCGAACTGCCGCTGCTGTACGTGTTTGCGTTGCTCAGACGC
CGCGAACTGCCGGAGCGACGGAAGACAAGAGGCGCCGTGCTCATGCTTTT
AGCGTACGTGCTGCTTCTGTGGGACGCGTCTGGCCATGTGCCCAATGTAC
AACAACTGGAACAATCTGCTCTTGGTCAAAGCGCAGAGCACACGCTCGAC
CGCTTCGCACATCTCACCCACCTCAAGGACGACGCGCCGCTGGGCGCCAC
GTCCGGCGGCGCGCGGCGGCGATTGCAGCGACTGGTGCAACGCTTCGACG
TGGATGGGCATGCATCCGTCTCGCACGATTGGAAACGTACGCCCACCACA
TGGCGCTGTGAACTGGGCGTGCTGCTCGTACTGGCGGCGTCCATCATGAT
GCAGTCTTCGCGCGCATTCACGCGCCGTCTGGCCACCGAACTGGGCGGCG
CCAAGCGATACTTTGCGCTCGGAACGACGGCGGCCAGCTGCTGGCTGGCG
CTAGCGGCTCTCGCACTGTCGGCGTTGTGGGGCAATGGGTACGGCAGCGC
CGACAGCGCCGGCGACACTGTGCGGTGGAGCGGCGTGGGCGTGCTTTGGT
TGGTGGTGCCGTACTACGTGCGCGCAGTTGTGAGCACGGCCATCTCGACG
CGCGTGGTGCTGCAGGGTGGCGTGGTGCTGCCCGCTTCCGCCGTCTCTGC
GCGCTGCGCGTCTGGTGGTCCACCAAGCACGCCCCTTGTTTAA
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