Ggra9856.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9856.t1
Unique NameGgra9856.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length478
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000170_piloncontigtig00000170_pilon:141319..142752 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog296587.XP_002504529.1
PFAMsS4,tRNA-synt_1b
Max annot lvl3041|Chlorophyta
KEGG rclassRC00055,RC00523
KEGG koko:K01866
KEGG ReactionR02918
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Evalue3.37e-174
EggNOG OGsCOG0162@1|root,KOG2623@2759|Eukaryota,37RBV@33090|Viridiplantae,34JUU@3041|Chlorophyta
EC6.1.1.1
DescriptionTyrosyl-Trna Synthetase
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9856Ggra9856Gracilaria gracilis GNS1m malegenetig00000170_pilon 141319..142752 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9856.t1.stop1Ggra9856.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000170_pilon 141319..141321 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9856.t1.CDS1Ggra9856.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000170_pilon 141319..142752 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9856.t1.exon1Ggra9856.t1.exon1Gracilaria gracilis GNS1m maleexontig00000170_pilon 141319..142752 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9856.t1.start1Ggra9856.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000170_pilon 142750..142752 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9856.t1Ggra9856.t1Gracilaria gracilis GNS1m malepolypeptidetig00000170_pilon 141319..142752 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9856.t1 ID=Ggra9856.t1|Name=Ggra9856.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=478bp
MTASPAFARSAPLLAVRVLAPLAPLAPRRALAPRRARVSACARAPGNVID
VLQQRGLLDACTAEPAVMRQLCERPITVYSGFDPTADSLHLGNLLAILAL
AWFQRCGHRVVALLGGATARVGDPSGKSAERPVLDEEAIRRNLSAIEANV
RQVLERSQAQLERDALPNRPFVVANNYDWLGQMSFLHFLRDVGKHARVNT
MIAKDSVKTRLASDDGISFTEFTYQLLQAYDFVHLSDTLDCVVQLGGSDQ
WGNITAGTELARKIRSKTLNGITFPLLTTADGKKFGKSENGAVWLSGDKL
SPYQFYQFLIRTTDQDVITLLKRLTFLPLDEIHSIEQHMQSPQYVPNTAQ
KRLAEEVTRIVHGDEGVKSALAATAAAAPGSSAVLSVEALEAIASDMPSA
SFGVEEIIGVGVVDLMVKGGLQKSKGEARRLIRNGGGYLNNEKITDERAV
LDSEDLVGGKLALLAAGKKNKLLVRVK*
back to top

spliced messenger RNA

>Ggra9856.t1 ID=Ggra9856.t1|Name=Ggra9856.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1434bp|location=Sequence derived from alignment at tig00000170_pilon:141319..142752- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGCGTCGCCGGCGTTCGCGCGCTCCGCGCCGCTGCTGGCCGTGCG
CGTACTGGCGCCGCTGGCGCCGCTGGCGCCGCGCCGCGCGCTGGCGCCGC
GCCGCGCGCGAGTGAGCGCGTGCGCACGCGCGCCCGGCAACGTCATCGAC
GTGCTGCAGCAGCGCGGGCTGCTGGACGCGTGCACGGCAGAGCCCGCCGT
GATGCGGCAGCTGTGCGAGCGCCCCATCACCGTGTACTCGGGCTTCGACC
CCACGGCAGACTCGCTGCACCTGGGCAACTTGCTGGCCATTCTGGCGCTG
GCGTGGTTCCAGCGCTGCGGGCACCGCGTCGTCGCGCTGTTGGGCGGCGC
CACAGCGCGCGTGGGCGACCCGAGCGGAAAGAGCGCGGAGCGCCCTGTTC
TGGACGAAGAGGCTATTCGCCGCAACTTGAGCGCCATCGAGGCCAATGTC
AGACAGGTGTTGGAGCGCTCGCAGGCGCAGCTTGAGCGAGACGCGCTGCC
GAATCGCCCTTTTGTTGTCGCCAATAACTACGATTGGCTGGGTCAGATGT
CCTTTCTGCACTTTCTTCGCGACGTTGGCAAGCATGCGCGCGTCAACACC
ATGATTGCCAAGGACTCGGTCAAGACCAGGCTGGCCAGCGATGACGGCAT
AAGTTTCACCGAGTTTACCTACCAGCTGTTGCAGGCGTATGATTTCGTGC
ATCTCAGCGATACTTTGGATTGCGTTGTGCAGCTTGGTGGCTCGGATCAA
TGGGGAAACATCACCGCTGGAACCGAACTTGCGCGCAAGATTCGCTCCAA
GACGTTGAATGGCATCACGTTCCCGTTGCTCACTACCGCTGATGGCAAGA
AGTTTGGCAAGAGTGAGAATGGAGCGGTGTGGCTCTCAGGCGACAAGCTG
TCGCCATATCAGTTCTACCAGTTTTTGATACGTACCACGGACCAGGATGT
CATTACCCTTTTGAAACGCCTTACCTTCCTGCCGCTCGATGAGATTCATT
CCATTGAGCAGCACATGCAATCGCCTCAATACGTGCCCAACACCGCGCAG
AAGCGACTCGCAGAGGAGGTCACCCGAATCGTGCACGGCGACGAAGGCGT
CAAATCCGCACTAGCGGCCACGGCAGCCGCCGCTCCGGGAAGCAGCGCCG
TGCTTAGCGTCGAAGCGCTGGAGGCAATCGCTTCCGACATGCCCAGCGCC
AGCTTCGGCGTGGAAGAGATTATCGGCGTGGGCGTCGTCGACCTCATGGT
CAAAGGCGGTTTACAGAAATCGAAGGGCGAGGCTCGACGTCTCATCAGAA
ATGGCGGCGGTTACCTTAACAACGAAAAGATTACTGATGAACGAGCCGTG
CTTGATAGCGAAGATCTTGTAGGGGGAAAGCTCGCTTTGTTGGCTGCTGG
CAAGAAGAATAAGCTTTTGGTTCGCGTAAAATGA
back to top

protein sequence of Ggra9856.t1

>Ggra9856.t1 ID=Ggra9856.t1|Name=Ggra9856.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=478bp
MTASPAFARSAPLLAVRVLAPLAPLAPRRALAPRRARVSACARAPGNVID
VLQQRGLLDACTAEPAVMRQLCERPITVYSGFDPTADSLHLGNLLAILAL
AWFQRCGHRVVALLGGATARVGDPSGKSAERPVLDEEAIRRNLSAIEANV
RQVLERSQAQLERDALPNRPFVVANNYDWLGQMSFLHFLRDVGKHARVNT
MIAKDSVKTRLASDDGISFTEFTYQLLQAYDFVHLSDTLDCVVQLGGSDQ
WGNITAGTELARKIRSKTLNGITFPLLTTADGKKFGKSENGAVWLSGDKL
SPYQFYQFLIRTTDQDVITLLKRLTFLPLDEIHSIEQHMQSPQYVPNTAQ
KRLAEEVTRIVHGDEGVKSALAATAAAAPGSSAVLSVEALEAIASDMPSA
SFGVEEIIGVGVVDLMVKGGLQKSKGEARRLIRNGGGYLNNEKITDERAV
LDSEDLVGGKLALLAAGKKNKLLVRVK*
back to top

mRNA from alignment at tig00000170_pilon:141319..142752-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9856.t1 ID=Ggra9856.t1|Name=Ggra9856.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1434bp|location=Sequence derived from alignment at tig00000170_pilon:141319..142752- (Gracilaria gracilis GNS1m male)
ATGACCGCGTCGCCGGCGTTCGCGCGCTCCGCGCCGCTGCTGGCCGTGCG
CGTACTGGCGCCGCTGGCGCCGCTGGCGCCGCGCCGCGCGCTGGCGCCGC
GCCGCGCGCGAGTGAGCGCGTGCGCACGCGCGCCCGGCAACGTCATCGAC
GTGCTGCAGCAGCGCGGGCTGCTGGACGCGTGCACGGCAGAGCCCGCCGT
GATGCGGCAGCTGTGCGAGCGCCCCATCACCGTGTACTCGGGCTTCGACC
CCACGGCAGACTCGCTGCACCTGGGCAACTTGCTGGCCATTCTGGCGCTG
GCGTGGTTCCAGCGCTGCGGGCACCGCGTCGTCGCGCTGTTGGGCGGCGC
CACAGCGCGCGTGGGCGACCCGAGCGGAAAGAGCGCGGAGCGCCCTGTTC
TGGACGAAGAGGCTATTCGCCGCAACTTGAGCGCCATCGAGGCCAATGTC
AGACAGGTGTTGGAGCGCTCGCAGGCGCAGCTTGAGCGAGACGCGCTGCC
GAATCGCCCTTTTGTTGTCGCCAATAACTACGATTGGCTGGGTCAGATGT
CCTTTCTGCACTTTCTTCGCGACGTTGGCAAGCATGCGCGCGTCAACACC
ATGATTGCCAAGGACTCGGTCAAGACCAGGCTGGCCAGCGATGACGGCAT
AAGTTTCACCGAGTTTACCTACCAGCTGTTGCAGGCGTATGATTTCGTGC
ATCTCAGCGATACTTTGGATTGCGTTGTGCAGCTTGGTGGCTCGGATCAA
TGGGGAAACATCACCGCTGGAACCGAACTTGCGCGCAAGATTCGCTCCAA
GACGTTGAATGGCATCACGTTCCCGTTGCTCACTACCGCTGATGGCAAGA
AGTTTGGCAAGAGTGAGAATGGAGCGGTGTGGCTCTCAGGCGACAAGCTG
TCGCCATATCAGTTCTACCAGTTTTTGATACGTACCACGGACCAGGATGT
CATTACCCTTTTGAAACGCCTTACCTTCCTGCCGCTCGATGAGATTCATT
CCATTGAGCAGCACATGCAATCGCCTCAATACGTGCCCAACACCGCGCAG
AAGCGACTCGCAGAGGAGGTCACCCGAATCGTGCACGGCGACGAAGGCGT
CAAATCCGCACTAGCGGCCACGGCAGCCGCCGCTCCGGGAAGCAGCGCCG
TGCTTAGCGTCGAAGCGCTGGAGGCAATCGCTTCCGACATGCCCAGCGCC
AGCTTCGGCGTGGAAGAGATTATCGGCGTGGGCGTCGTCGACCTCATGGT
CAAAGGCGGTTTACAGAAATCGAAGGGCGAGGCTCGACGTCTCATCAGAA
ATGGCGGCGGTTACCTTAACAACGAAAAGATTACTGATGAACGAGCCGTG
CTTGATAGCGAAGATCTTGTAGGGGGAAAGCTCGCTTTGTTGGCTGCTGG
CAAGAAGAATAAGCTTTTGGTTCGCGTAAAATGA
back to top

Coding sequence (CDS) from alignment at tig00000170_pilon:141319..142752-

>Ggra9856.t1 ID=Ggra9856.t1|Name=Ggra9856.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1434bp|location=Sequence derived from alignment at tig00000170_pilon:141319..142752- (Gracilaria gracilis GNS1m male)
ATGACCGCGTCGCCGGCGTTCGCGCGCTCCGCGCCGCTGCTGGCCGTGCG
CGTACTGGCGCCGCTGGCGCCGCTGGCGCCGCGCCGCGCGCTGGCGCCGC
GCCGCGCGCGAGTGAGCGCGTGCGCACGCGCGCCCGGCAACGTCATCGAC
GTGCTGCAGCAGCGCGGGCTGCTGGACGCGTGCACGGCAGAGCCCGCCGT
GATGCGGCAGCTGTGCGAGCGCCCCATCACCGTGTACTCGGGCTTCGACC
CCACGGCAGACTCGCTGCACCTGGGCAACTTGCTGGCCATTCTGGCGCTG
GCGTGGTTCCAGCGCTGCGGGCACCGCGTCGTCGCGCTGTTGGGCGGCGC
CACAGCGCGCGTGGGCGACCCGAGCGGAAAGAGCGCGGAGCGCCCTGTTC
TGGACGAAGAGGCTATTCGCCGCAACTTGAGCGCCATCGAGGCCAATGTC
AGACAGGTGTTGGAGCGCTCGCAGGCGCAGCTTGAGCGAGACGCGCTGCC
GAATCGCCCTTTTGTTGTCGCCAATAACTACGATTGGCTGGGTCAGATGT
CCTTTCTGCACTTTCTTCGCGACGTTGGCAAGCATGCGCGCGTCAACACC
ATGATTGCCAAGGACTCGGTCAAGACCAGGCTGGCCAGCGATGACGGCAT
AAGTTTCACCGAGTTTACCTACCAGCTGTTGCAGGCGTATGATTTCGTGC
ATCTCAGCGATACTTTGGATTGCGTTGTGCAGCTTGGTGGCTCGGATCAA
TGGGGAAACATCACCGCTGGAACCGAACTTGCGCGCAAGATTCGCTCCAA
GACGTTGAATGGCATCACGTTCCCGTTGCTCACTACCGCTGATGGCAAGA
AGTTTGGCAAGAGTGAGAATGGAGCGGTGTGGCTCTCAGGCGACAAGCTG
TCGCCATATCAGTTCTACCAGTTTTTGATACGTACCACGGACCAGGATGT
CATTACCCTTTTGAAACGCCTTACCTTCCTGCCGCTCGATGAGATTCATT
CCATTGAGCAGCACATGCAATCGCCTCAATACGTGCCCAACACCGCGCAG
AAGCGACTCGCAGAGGAGGTCACCCGAATCGTGCACGGCGACGAAGGCGT
CAAATCCGCACTAGCGGCCACGGCAGCCGCCGCTCCGGGAAGCAGCGCCG
TGCTTAGCGTCGAAGCGCTGGAGGCAATCGCTTCCGACATGCCCAGCGCC
AGCTTCGGCGTGGAAGAGATTATCGGCGTGGGCGTCGTCGACCTCATGGT
CAAAGGCGGTTTACAGAAATCGAAGGGCGAGGCTCGACGTCTCATCAGAA
ATGGCGGCGGTTACCTTAACAACGAAAAGATTACTGATGAACGAGCCGTG
CTTGATAGCGAAGATCTTGTAGGGGGAAAGCTCGCTTTGTTGGCTGCTGG
CAAGAAGAATAAGCTTTTGGTTCGCGTAAAATGA
back to top