Ggra9855.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9855.t1
Unique Name	Ggra9855.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	493

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000170_pilon	contig	tig00000170_pilon:139756..141234 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9855	Ggra9855	Gracilaria gracilis GNS1m male	gene	tig00000170_pilon 139756..141234 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9855.t1.start1	Ggra9855.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000170_pilon 139756..139758 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9855.t1.CDS1	Ggra9855.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000170_pilon 139756..141234 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9855.t1.exon1	Ggra9855.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000170_pilon 139756..141234 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9855.t1.stop1	Ggra9855.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000170_pilon 141232..141234 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9855.t1	Ggra9855.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000170_pilon 139756..141234 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000170_pilon:139756..141234+
coding sequence from alignment at tig00000170_pilon:139756..141234+

mRNA sequence

>Ggra9855.t1 ID=Ggra9855.t1|Name=Ggra9855.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=493bp
MEHARLDALIHGKQQCVSFRHVSALLSLPARSAQKLLLSYVDSQPAGKLS
VLWMVSRADGRTKATKTLLTTSPSATESKQIWAVGPATAATAPSLHAAWI
ANDAARERELVKKPSHEPNELRDGRFNVLKSSTNAYDQRIDPRLGGDARL
MNKNSVEKKSNSSSFLSRVKSKTKGKKSKQSPFSFKKPTSNTSSTSSLFS
SKPLGANSVRKIKAEERATGKEPNNKNKKPSPTPPSARNGSSARTAKAGG
EDRRKKKPAKKARKIIVQEDSDSEDKESDEEIDAEQLRIMELEQEAAEEE
RAAAERAELERELIDLQEKVDDEPESPVLQDMDTEMKDVENVTPEKERKV
DDSPNKGKRSYWDTLNHTPVSGRRIRKEVQELVEENGFFVMRRVMKVFDE
DGNEVADDGETEKQRLEQEKKKKTEESNASLRNLFTPVKNKPSSRSKLAS
TNVKPGKASAATTLPQKKAGKRKGKSIKSYFQKRVYKHSAHE*

spliced messenger RNA

>Ggra9855.t1 ID=Ggra9855.t1|Name=Ggra9855.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1479bp|location=Sequence derived from alignment at tig00000170_pilon:139756..141234+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCACGCCAGATTGGATGCTCTCATCCACGGCAAGCAGCAATGTGT
TTCTTTCCGTCACGTCTCAGCTCTTCTCTCCCTTCCCGCCCGCTCAGCCC
AAAAGTTGTTACTGTCGTACGTCGACTCACAACCAGCAGGAAAGCTCTCT
GTTCTGTGGATGGTTTCCCGGGCTGATGGACGTACAAAGGCAACGAAAAC
ACTGCTCACAACCTCACCTTCTGCGACGGAAAGCAAGCAGATTTGGGCGG
TTGGTCCGGCTACAGCTGCTACTGCACCCTCGTTACATGCCGCTTGGATT
GCCAATGACGCCGCTAGAGAGAGAGAGTTGGTGAAAAAGCCCTCTCATGA
GCCGAATGAATTGAGGGATGGTCGCTTCAATGTATTGAAATCCAGCACGA
ATGCTTATGATCAGCGCATTGATCCACGTCTAGGCGGTGATGCTCGCTTA
ATGAATAAGAACAGCGTGGAGAAAAAGAGCAATTCATCATCGTTTTTGTC
GCGGGTCAAGTCGAAAACGAAGGGGAAGAAGAGCAAGCAATCTCCGTTTT
CTTTCAAGAAACCCACAAGTAACACGAGCTCGACTTCGAGTCTGTTCAGT
TCAAAGCCGCTTGGTGCAAATTCAGTCCGAAAGATCAAAGCTGAAGAACG
TGCCACGGGAAAAGAACCGAACAACAAAAATAAGAAACCTTCTCCCACTC
CGCCATCCGCTCGGAACGGTTCATCAGCAAGGACGGCTAAAGCGGGAGGC
GAGGATCGTCGGAAGAAAAAGCCCGCGAAGAAAGCAAGAAAGATTATCGT
ACAGGAAGACAGTGACAGCGAAGACAAGGAATCTGACGAAGAGATAGACG
CAGAACAGTTAAGGATAATGGAGCTTGAGCAAGAGGCCGCTGAAGAAGAA
CGCGCAGCGGCGGAACGCGCTGAGTTGGAAAGGGAGCTGATAGATCTTCA
GGAAAAGGTGGATGACGAACCAGAGTCACCGGTATTGCAAGATATGGATA
CGGAGATGAAGGACGTTGAGAATGTCACACCCGAAAAGGAACGAAAGGTG
GACGACAGTCCGAACAAAGGAAAGCGGTCGTATTGGGATACATTAAACCA
TACACCTGTGAGCGGACGACGCATTCGAAAAGAGGTACAAGAGCTTGTCG
AGGAGAACGGATTCTTTGTCATGAGGAGAGTAATGAAGGTGTTTGACGAA
GACGGAAATGAAGTAGCCGATGATGGTGAGACTGAAAAACAGAGGTTAGA
GCAAGAAAAGAAAAAGAAAACGGAAGAAAGTAATGCGTCTCTACGCAACC
TCTTCACGCCTGTCAAGAACAAGCCGAGCAGCCGTTCGAAGCTGGCGAGC
ACGAACGTCAAACCCGGAAAGGCTTCAGCCGCTACAACATTACCACAAAA
GAAGGCGGGCAAGAGAAAAGGCAAGAGCATCAAATCATACTTCCAGAAGA
GAGTGTATAAACACAGTGCACATGAATGA

protein sequence of Ggra9855.t1

>Ggra9855.t1 ID=Ggra9855.t1|Name=Ggra9855.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=493bp
MEHARLDALIHGKQQCVSFRHVSALLSLPARSAQKLLLSYVDSQPAGKLS
VLWMVSRADGRTKATKTLLTTSPSATESKQIWAVGPATAATAPSLHAAWI
ANDAARERELVKKPSHEPNELRDGRFNVLKSSTNAYDQRIDPRLGGDARL
MNKNSVEKKSNSSSFLSRVKSKTKGKKSKQSPFSFKKPTSNTSSTSSLFS
SKPLGANSVRKIKAEERATGKEPNNKNKKPSPTPPSARNGSSARTAKAGG
EDRRKKKPAKKARKIIVQEDSDSEDKESDEEIDAEQLRIMELEQEAAEEE
RAAAERAELERELIDLQEKVDDEPESPVLQDMDTEMKDVENVTPEKERKV
DDSPNKGKRSYWDTLNHTPVSGRRIRKEVQELVEENGFFVMRRVMKVFDE
DGNEVADDGETEKQRLEQEKKKKTEESNASLRNLFTPVKNKPSSRSKLAS
TNVKPGKASAATTLPQKKAGKRKGKSIKSYFQKRVYKHSAHE*

mRNA from alignment at tig00000170_pilon:139756..141234+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9855.t1 ID=Ggra9855.t1|Name=Ggra9855.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1479bp|location=Sequence derived from alignment at tig00000170_pilon:139756..141234+ (Gracilaria gracilis GNS1m male)
ATGGAGCACGCCAGATTGGATGCTCTCATCCACGGCAAGCAGCAATGTGT
TTCTTTCCGTCACGTCTCAGCTCTTCTCTCCCTTCCCGCCCGCTCAGCCC
AAAAGTTGTTACTGTCGTACGTCGACTCACAACCAGCAGGAAAGCTCTCT
GTTCTGTGGATGGTTTCCCGGGCTGATGGACGTACAAAGGCAACGAAAAC
ACTGCTCACAACCTCACCTTCTGCGACGGAAAGCAAGCAGATTTGGGCGG
TTGGTCCGGCTACAGCTGCTACTGCACCCTCGTTACATGCCGCTTGGATT
GCCAATGACGCCGCTAGAGAGAGAGAGTTGGTGAAAAAGCCCTCTCATGA
GCCGAATGAATTGAGGGATGGTCGCTTCAATGTATTGAAATCCAGCACGA
ATGCTTATGATCAGCGCATTGATCCACGTCTAGGCGGTGATGCTCGCTTA
ATGAATAAGAACAGCGTGGAGAAAAAGAGCAATTCATCATCGTTTTTGTC
GCGGGTCAAGTCGAAAACGAAGGGGAAGAAGAGCAAGCAATCTCCGTTTT
CTTTCAAGAAACCCACAAGTAACACGAGCTCGACTTCGAGTCTGTTCAGT
TCAAAGCCGCTTGGTGCAAATTCAGTCCGAAAGATCAAAGCTGAAGAACG
TGCCACGGGAAAAGAACCGAACAACAAAAATAAGAAACCTTCTCCCACTC
CGCCATCCGCTCGGAACGGTTCATCAGCAAGGACGGCTAAAGCGGGAGGC
GAGGATCGTCGGAAGAAAAAGCCCGCGAAGAAAGCAAGAAAGATTATCGT
ACAGGAAGACAGTGACAGCGAAGACAAGGAATCTGACGAAGAGATAGACG
CAGAACAGTTAAGGATAATGGAGCTTGAGCAAGAGGCCGCTGAAGAAGAA
CGCGCAGCGGCGGAACGCGCTGAGTTGGAAAGGGAGCTGATAGATCTTCA
GGAAAAGGTGGATGACGAACCAGAGTCACCGGTATTGCAAGATATGGATA
CGGAGATGAAGGACGTTGAGAATGTCACACCCGAAAAGGAACGAAAGGTG
GACGACAGTCCGAACAAAGGAAAGCGGTCGTATTGGGATACATTAAACCA
TACACCTGTGAGCGGACGACGCATTCGAAAAGAGGTACAAGAGCTTGTCG
AGGAGAACGGATTCTTTGTCATGAGGAGAGTAATGAAGGTGTTTGACGAA
GACGGAAATGAAGTAGCCGATGATGGTGAGACTGAAAAACAGAGGTTAGA
GCAAGAAAAGAAAAAGAAAACGGAAGAAAGTAATGCGTCTCTACGCAACC
TCTTCACGCCTGTCAAGAACAAGCCGAGCAGCCGTTCGAAGCTGGCGAGC
ACGAACGTCAAACCCGGAAAGGCTTCAGCCGCTACAACATTACCACAAAA
GAAGGCGGGCAAGAGAAAAGGCAAGAGCATCAAATCATACTTCCAGAAGA
GAGTGTATAAACACAGTGCACATGAATGA

Coding sequence (CDS) from alignment at tig00000170_pilon:139756..141234+

>Ggra9855.t1 ID=Ggra9855.t1|Name=Ggra9855.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1479bp|location=Sequence derived from alignment at tig00000170_pilon:139756..141234+ (Gracilaria gracilis GNS1m male)
ATGGAGCACGCCAGATTGGATGCTCTCATCCACGGCAAGCAGCAATGTGT
TTCTTTCCGTCACGTCTCAGCTCTTCTCTCCCTTCCCGCCCGCTCAGCCC
AAAAGTTGTTACTGTCGTACGTCGACTCACAACCAGCAGGAAAGCTCTCT
GTTCTGTGGATGGTTTCCCGGGCTGATGGACGTACAAAGGCAACGAAAAC
ACTGCTCACAACCTCACCTTCTGCGACGGAAAGCAAGCAGATTTGGGCGG
TTGGTCCGGCTACAGCTGCTACTGCACCCTCGTTACATGCCGCTTGGATT
GCCAATGACGCCGCTAGAGAGAGAGAGTTGGTGAAAAAGCCCTCTCATGA
GCCGAATGAATTGAGGGATGGTCGCTTCAATGTATTGAAATCCAGCACGA
ATGCTTATGATCAGCGCATTGATCCACGTCTAGGCGGTGATGCTCGCTTA
ATGAATAAGAACAGCGTGGAGAAAAAGAGCAATTCATCATCGTTTTTGTC
GCGGGTCAAGTCGAAAACGAAGGGGAAGAAGAGCAAGCAATCTCCGTTTT
CTTTCAAGAAACCCACAAGTAACACGAGCTCGACTTCGAGTCTGTTCAGT
TCAAAGCCGCTTGGTGCAAATTCAGTCCGAAAGATCAAAGCTGAAGAACG
TGCCACGGGAAAAGAACCGAACAACAAAAATAAGAAACCTTCTCCCACTC
CGCCATCCGCTCGGAACGGTTCATCAGCAAGGACGGCTAAAGCGGGAGGC
GAGGATCGTCGGAAGAAAAAGCCCGCGAAGAAAGCAAGAAAGATTATCGT
ACAGGAAGACAGTGACAGCGAAGACAAGGAATCTGACGAAGAGATAGACG
CAGAACAGTTAAGGATAATGGAGCTTGAGCAAGAGGCCGCTGAAGAAGAA
CGCGCAGCGGCGGAACGCGCTGAGTTGGAAAGGGAGCTGATAGATCTTCA
GGAAAAGGTGGATGACGAACCAGAGTCACCGGTATTGCAAGATATGGATA
CGGAGATGAAGGACGTTGAGAATGTCACACCCGAAAAGGAACGAAAGGTG
GACGACAGTCCGAACAAAGGAAAGCGGTCGTATTGGGATACATTAAACCA
TACACCTGTGAGCGGACGACGCATTCGAAAAGAGGTACAAGAGCTTGTCG
AGGAGAACGGATTCTTTGTCATGAGGAGAGTAATGAAGGTGTTTGACGAA
GACGGAAATGAAGTAGCCGATGATGGTGAGACTGAAAAACAGAGGTTAGA
GCAAGAAAAGAAAAAGAAAACGGAAGAAAGTAATGCGTCTCTACGCAACC
TCTTCACGCCTGTCAAGAACAAGCCGAGCAGCCGTTCGAAGCTGGCGAGC
ACGAACGTCAAACCCGGAAAGGCTTCAGCCGCTACAACATTACCACAAAA
GAAGGCGGGCAAGAGAAAAGGCAAGAGCATCAAATCATACTTCCAGAAGA
GAGTGTATAAACACAGTGCACATGAATGA