Ggra9854.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9854.t1
Unique Name	Ggra9854.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	429

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000170_pilon	contig	tig00000170_pilon:137882..139168 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	118163.Ple7327_1681
PFAMs	Glyco_transf_28,UDPGT
Max annot lvl	1117\|Cyanobacteria
Evalue	1.28e-99
EggNOG OGs	COG1819@1\|root,COG1819@2\|Bacteria,1G1XQ@1117\|Cyanobacteria,3VKX2@52604\|Pleurocapsales
Description	UDP-glucoronosyl and UDP-glucosyl transferase
COG category	CG

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9854	Ggra9854	Gracilaria gracilis GNS1m male	gene	tig00000170_pilon 137882..139168 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9854.t1.start1	Ggra9854.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000170_pilon 137882..137884 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9854.t1.CDS1	Ggra9854.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000170_pilon 137882..139168 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9854.t1.exon1	Ggra9854.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000170_pilon 137882..139168 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9854.t1.stop1	Ggra9854.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000170_pilon 139166..139168 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9854.t1	Ggra9854.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000170_pilon 137882..139168 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000170_pilon:137882..139168+
coding sequence from alignment at tig00000170_pilon:137882..139168+

mRNA sequence

>Ggra9854.t1 ID=Ggra9854.t1|Name=Ggra9854.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=429bp
MARIGFACRASHSYLNSMSEIALELQRRGHQIVFIGIPDIRPKLKHFDFE
LVHIGEADFPPGYASTSMKMLGERKGHSALRFVSDHVAENGKVFLRDAPG
LVRAANLDLLVIEQTMVSMMTVADFLNIPYITVCVSLITNPDPLVPPVFS
HHIPLHPFLCKLQTYLEHRIERVLTNNVFKEVHLKRKEWNLPPIRDPRNY
HSPYATIVQFPKSIDFQRKHLPTNYHYVGRFSDPSGTEPLCRNVSFPFHK
LDGRPIIYACLGTILNEMQDMYKKVVEAAKGLNAQLVVSLGNPQATVDED
EDINDAIVVPFAPQEKLVSMSAVVITHGGNNTATMAMSYGVPMVVIPVAN
DQPGVAARVASGGVGVSIHPKKLNVDVLRSSINDVLMDSRYRKQAEKVRT
EIEEAGGVRKAAEIVETVARTRQPVFTA*

spliced messenger RNA

>Ggra9854.t1 ID=Ggra9854.t1|Name=Ggra9854.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1287bp|location=Sequence derived from alignment at tig00000170_pilon:137882..139168+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCGTATAGGCTTTGCTTGTCGCGCCTCGCACAGCTATCTCAACTC
CATGTCCGAAATTGCTCTCGAGCTCCAGCGCCGCGGACACCAAATCGTCT
TCATCGGCATTCCAGACATCCGCCCAAAGTTGAAGCACTTTGACTTCGAA
CTGGTTCACATCGGAGAAGCTGATTTTCCACCCGGTTACGCCTCAACCTC
CATGAAAATGTTAGGAGAACGTAAGGGCCATTCAGCGCTACGCTTTGTAT
CCGATCATGTTGCTGAGAATGGGAAGGTGTTCTTACGCGACGCGCCTGGT
CTTGTTCGAGCCGCTAATCTGGATCTCTTGGTGATTGAACAAACTATGGT
TTCAATGATGACTGTTGCTGATTTCCTTAACATTCCTTACATCACTGTTT
GCGTATCTCTTATTACTAATCCTGACCCCCTTGTACCCCCGGTATTTTCT
CACCACATCCCTCTTCACCCCTTTCTGTGTAAGCTTCAGACATATCTTGA
ACACCGGATAGAAAGGGTTCTTACTAATAACGTCTTCAAGGAAGTTCATC
TCAAGCGAAAGGAATGGAATTTGCCTCCAATTCGTGACCCAAGAAACTAT
CATTCTCCGTATGCAACAATCGTTCAGTTCCCCAAATCCATTGATTTCCA
AAGAAAGCACCTGCCCACAAACTATCACTATGTCGGACGATTCTCCGACC
CCTCTGGCACGGAACCTCTGTGTAGGAACGTCTCGTTTCCCTTCCACAAA
CTTGATGGCCGACCCATAATCTACGCATGTCTCGGGACGATTCTAAACGA
GATGCAAGATATGTACAAGAAGGTTGTTGAGGCAGCTAAAGGGCTGAATG
CGCAGCTCGTTGTCTCACTCGGCAATCCTCAAGCCACTGTTGACGAGGAT
GAGGATATCAATGACGCAATTGTAGTACCTTTTGCACCTCAAGAGAAGCT
TGTTTCAATGTCTGCCGTGGTCATTACGCATGGTGGGAATAATACCGCCA
CTATGGCTATGTCGTATGGTGTTCCAATGGTTGTCATTCCGGTTGCCAAC
GATCAACCAGGAGTAGCAGCTCGCGTCGCATCTGGTGGCGTGGGTGTTTC
CATCCATCCAAAGAAGCTTAATGTCGATGTTCTTCGTTCTTCCATTAACG
ACGTCTTAATGGACAGCAGATATCGTAAGCAAGCAGAAAAGGTGCGCACG
GAAATAGAAGAGGCCGGGGGCGTGAGAAAAGCAGCTGAGATTGTTGAGAC
GGTAGCCAGGACAAGGCAACCTGTCTTCACTGCATAA

protein sequence of Ggra9854.t1

>Ggra9854.t1 ID=Ggra9854.t1|Name=Ggra9854.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=429bp
MARIGFACRASHSYLNSMSEIALELQRRGHQIVFIGIPDIRPKLKHFDFE
LVHIGEADFPPGYASTSMKMLGERKGHSALRFVSDHVAENGKVFLRDAPG
LVRAANLDLLVIEQTMVSMMTVADFLNIPYITVCVSLITNPDPLVPPVFS
HHIPLHPFLCKLQTYLEHRIERVLTNNVFKEVHLKRKEWNLPPIRDPRNY
HSPYATIVQFPKSIDFQRKHLPTNYHYVGRFSDPSGTEPLCRNVSFPFHK
LDGRPIIYACLGTILNEMQDMYKKVVEAAKGLNAQLVVSLGNPQATVDED
EDINDAIVVPFAPQEKLVSMSAVVITHGGNNTATMAMSYGVPMVVIPVAN
DQPGVAARVASGGVGVSIHPKKLNVDVLRSSINDVLMDSRYRKQAEKVRT
EIEEAGGVRKAAEIVETVARTRQPVFTA*

mRNA from alignment at tig00000170_pilon:137882..139168+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9854.t1 ID=Ggra9854.t1|Name=Ggra9854.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1287bp|location=Sequence derived from alignment at tig00000170_pilon:137882..139168+ (Gracilaria gracilis GNS1m male)
ATGGCTCGTATAGGCTTTGCTTGTCGCGCCTCGCACAGCTATCTCAACTC
CATGTCCGAAATTGCTCTCGAGCTCCAGCGCCGCGGACACCAAATCGTCT
TCATCGGCATTCCAGACATCCGCCCAAAGTTGAAGCACTTTGACTTCGAA
CTGGTTCACATCGGAGAAGCTGATTTTCCACCCGGTTACGCCTCAACCTC
CATGAAAATGTTAGGAGAACGTAAGGGCCATTCAGCGCTACGCTTTGTAT
CCGATCATGTTGCTGAGAATGGGAAGGTGTTCTTACGCGACGCGCCTGGT
CTTGTTCGAGCCGCTAATCTGGATCTCTTGGTGATTGAACAAACTATGGT
TTCAATGATGACTGTTGCTGATTTCCTTAACATTCCTTACATCACTGTTT
GCGTATCTCTTATTACTAATCCTGACCCCCTTGTACCCCCGGTATTTTCT
CACCACATCCCTCTTCACCCCTTTCTGTGTAAGCTTCAGACATATCTTGA
ACACCGGATAGAAAGGGTTCTTACTAATAACGTCTTCAAGGAAGTTCATC
TCAAGCGAAAGGAATGGAATTTGCCTCCAATTCGTGACCCAAGAAACTAT
CATTCTCCGTATGCAACAATCGTTCAGTTCCCCAAATCCATTGATTTCCA
AAGAAAGCACCTGCCCACAAACTATCACTATGTCGGACGATTCTCCGACC
CCTCTGGCACGGAACCTCTGTGTAGGAACGTCTCGTTTCCCTTCCACAAA
CTTGATGGCCGACCCATAATCTACGCATGTCTCGGGACGATTCTAAACGA
GATGCAAGATATGTACAAGAAGGTTGTTGAGGCAGCTAAAGGGCTGAATG
CGCAGCTCGTTGTCTCACTCGGCAATCCTCAAGCCACTGTTGACGAGGAT
GAGGATATCAATGACGCAATTGTAGTACCTTTTGCACCTCAAGAGAAGCT
TGTTTCAATGTCTGCCGTGGTCATTACGCATGGTGGGAATAATACCGCCA
CTATGGCTATGTCGTATGGTGTTCCAATGGTTGTCATTCCGGTTGCCAAC
GATCAACCAGGAGTAGCAGCTCGCGTCGCATCTGGTGGCGTGGGTGTTTC
CATCCATCCAAAGAAGCTTAATGTCGATGTTCTTCGTTCTTCCATTAACG
ACGTCTTAATGGACAGCAGATATCGTAAGCAAGCAGAAAAGGTGCGCACG
GAAATAGAAGAGGCCGGGGGCGTGAGAAAAGCAGCTGAGATTGTTGAGAC
GGTAGCCAGGACAAGGCAACCTGTCTTCACTGCATAA

Coding sequence (CDS) from alignment at tig00000170_pilon:137882..139168+

>Ggra9854.t1 ID=Ggra9854.t1|Name=Ggra9854.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1287bp|location=Sequence derived from alignment at tig00000170_pilon:137882..139168+ (Gracilaria gracilis GNS1m male)
ATGGCTCGTATAGGCTTTGCTTGTCGCGCCTCGCACAGCTATCTCAACTC
CATGTCCGAAATTGCTCTCGAGCTCCAGCGCCGCGGACACCAAATCGTCT
TCATCGGCATTCCAGACATCCGCCCAAAGTTGAAGCACTTTGACTTCGAA
CTGGTTCACATCGGAGAAGCTGATTTTCCACCCGGTTACGCCTCAACCTC
CATGAAAATGTTAGGAGAACGTAAGGGCCATTCAGCGCTACGCTTTGTAT
CCGATCATGTTGCTGAGAATGGGAAGGTGTTCTTACGCGACGCGCCTGGT
CTTGTTCGAGCCGCTAATCTGGATCTCTTGGTGATTGAACAAACTATGGT
TTCAATGATGACTGTTGCTGATTTCCTTAACATTCCTTACATCACTGTTT
GCGTATCTCTTATTACTAATCCTGACCCCCTTGTACCCCCGGTATTTTCT
CACCACATCCCTCTTCACCCCTTTCTGTGTAAGCTTCAGACATATCTTGA
ACACCGGATAGAAAGGGTTCTTACTAATAACGTCTTCAAGGAAGTTCATC
TCAAGCGAAAGGAATGGAATTTGCCTCCAATTCGTGACCCAAGAAACTAT
CATTCTCCGTATGCAACAATCGTTCAGTTCCCCAAATCCATTGATTTCCA
AAGAAAGCACCTGCCCACAAACTATCACTATGTCGGACGATTCTCCGACC
CCTCTGGCACGGAACCTCTGTGTAGGAACGTCTCGTTTCCCTTCCACAAA
CTTGATGGCCGACCCATAATCTACGCATGTCTCGGGACGATTCTAAACGA
GATGCAAGATATGTACAAGAAGGTTGTTGAGGCAGCTAAAGGGCTGAATG
CGCAGCTCGTTGTCTCACTCGGCAATCCTCAAGCCACTGTTGACGAGGAT
GAGGATATCAATGACGCAATTGTAGTACCTTTTGCACCTCAAGAGAAGCT
TGTTTCAATGTCTGCCGTGGTCATTACGCATGGTGGGAATAATACCGCCA
CTATGGCTATGTCGTATGGTGTTCCAATGGTTGTCATTCCGGTTGCCAAC
GATCAACCAGGAGTAGCAGCTCGCGTCGCATCTGGTGGCGTGGGTGTTTC
CATCCATCCAAAGAAGCTTAATGTCGATGTTCTTCGTTCTTCCATTAACG
ACGTCTTAATGGACAGCAGATATCGTAAGCAAGCAGAAAAGGTGCGCACG
GAAATAGAAGAGGCCGGGGGCGTGAGAAAAGCAGCTGAGATTGTTGAGAC
GGTAGCCAGGACAAGGCAACCTGTCTTCACTGCATAA