Ggra9852.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9852.t1
Unique Name	Ggra9852.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	420

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000170_pilon	contig	tig00000170_pilon:124240..125499 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	5334.XP_003031473.1
Preferred name	NUP57
PFAMs	Nucleoporin_FG,Nup54
Max annot lvl	4751\|Fungi
KEGG ko	ko:K14308
KEGG TC	1.I.1
KEGG Pathway	ko03013,map03013
KEGG Module	M00427
GOs	GO:0003674,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0006606,GO:0006607,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0006997,GO:0006999,GO:0008104,GO:0008150,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0017038,GO:0017056,GO:0031224,GO:0031967,GO:0031975,GO:0032991,GO:0033036,GO:0033365,GO:0034504,GO:0034613,GO:0036228,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044446,GO:0044464,GO:0044613,GO:0045184,GO:0046907,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0072657,GO:0090435
Evalue	7.92e-22
EggNOG OGs	KOG0845@1\|root,KOG3091@1\|root,KOG0845@2759\|Eukaryota,KOG3091@2759\|Eukaryota,38C34@33154\|Opisthokonta,3NVWB@4751\|Fungi,3VC7T@5204\|Basidiomycota,224BZ@155619\|Agaricomycetes,3W6DR@5338\|Agaricales
Description	Nucleoporin complex subunit 54
COG category	UY
BRITE	ko00000,ko00001,ko00002,ko03019

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9852	Ggra9852	Gracilaria gracilis GNS1m male	gene	tig00000170_pilon 124240..125499 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9852.t1.start1	Ggra9852.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000170_pilon 124240..124242 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9852.t1.CDS1	Ggra9852.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000170_pilon 124240..125499 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9852.t1.exon1	Ggra9852.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000170_pilon 124240..125499 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9852.t1.stop1	Ggra9852.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000170_pilon 125497..125499 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9852.t1	Ggra9852.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000170_pilon 124240..125499 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000170_pilon:124240..125499+
coding sequence from alignment at tig00000170_pilon:124240..125499+

mRNA sequence

>Ggra9852.t1 ID=Ggra9852.t1|Name=Ggra9852.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=420bp
MAFNFGGPSQAQSSFGFGASSQPQATFGFGASSQAPGSFGFGASQPQSQS
LFGSTPQSQSLFGQPQSQSLFGQPQSQSLFGSTPQSQSLFGQPQSQSLFG
QPQSQSLFAQSSQSLFGQSSQSLFGQSQSSLFGQPQSSASLFGAQSQSIW
GQSSSGFGGSSMFGASQPQMAQQQQQQPLRLPRKLTDVIEKLNPLHPESK
FHTALYNSVAPGDISRYTRPGNMDEKLWDEAVERNPDPSRLVPVQANLFD
DLIQRSNMQTKRVEEHLLVLSKIEQLIKNIDGEMDTEISTKLAAYRRRHR
ELARKLLRIASSVELEASNIDSSGVLTPTESERKKRLDTIARALAAPAEF
KDKLSDLVEIAESTVLNRQTQPTVEIRDPKAANAIKQLLNDQLQGIQHLS
HVCERADRDISIMTTALDR*

spliced messenger RNA

>Ggra9852.t1 ID=Ggra9852.t1|Name=Ggra9852.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1260bp|location=Sequence derived from alignment at tig00000170_pilon:124240..125499+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTTCAACTTTGGCGGCCCCAGCCAGGCACAGTCTTCGTTCGGCTT
TGGCGCCTCGAGCCAGCCACAAGCTACCTTTGGCTTCGGCGCCTCAAGTC
AAGCCCCTGGTTCGTTTGGATTCGGGGCTTCTCAACCGCAATCGCAATCA
TTGTTCGGATCTACTCCGCAATCACAGTCACTGTTCGGTCAACCGCAGTC
GCAATCTTTGTTTGGGCAGCCGCAATCGCAATCATTGTTCGGATCAACTC
CGCAATCACAGTCTCTGTTCGGTCAACCGCAGTCGCAATCTTTGTTTGGG
CAGCCGCAATCACAATCCCTTTTTGCACAATCAAGCCAGTCGCTTTTTGG
GCAGTCAAGCCAATCGCTTTTCGGGCAATCACAGTCGAGTCTGTTTGGAC
AGCCTCAGTCGAGTGCTAGTTTGTTTGGGGCACAGAGTCAGTCCATATGG
GGTCAATCGTCGTCTGGGTTTGGTGGATCCTCAATGTTCGGTGCGTCGCA
ACCACAAATGGCACAGCAACAACAGCAGCAGCCCTTGCGTCTTCCTCGTA
AATTGACCGATGTCATCGAAAAGCTCAACCCATTACATCCTGAATCCAAG
TTTCACACCGCTCTGTACAACAGCGTAGCACCCGGCGATATTTCAAGATA
CACACGACCTGGTAATATGGACGAAAAACTCTGGGATGAAGCTGTGGAAA
GAAATCCCGATCCGTCGCGTCTCGTTCCCGTACAAGCGAATCTTTTTGAC
GATCTTATTCAACGATCTAATATGCAAACAAAGCGAGTTGAGGAACATCT
CCTCGTTCTCTCCAAAATTGAACAACTCATCAAGAACATCGATGGAGAAA
TGGATACAGAAATATCCACCAAACTTGCGGCATACAGACGAAGACATCGC
GAACTCGCGCGCAAGTTGTTGAGAATTGCCTCTAGTGTGGAATTGGAGGC
TTCTAACATTGACTCCAGTGGTGTGCTAACGCCGACGGAAAGCGAGCGAA
AGAAGAGATTGGATACGATTGCGAGAGCGCTGGCAGCTCCTGCTGAATTC
AAAGACAAACTGAGTGACTTGGTTGAGATTGCCGAATCCACTGTGTTGAA
TCGACAGACACAACCAACTGTTGAGATTCGAGATCCCAAAGCCGCAAACG
CTATCAAACAGCTGTTGAACGATCAACTGCAAGGGATTCAACATCTCAGT
CATGTCTGCGAACGTGCTGATAGAGACATTTCTATCATGACGACTGCGTT
GGATCGATGA

protein sequence of Ggra9852.t1

>Ggra9852.t1 ID=Ggra9852.t1|Name=Ggra9852.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=420bp
MAFNFGGPSQAQSSFGFGASSQPQATFGFGASSQAPGSFGFGASQPQSQS
LFGSTPQSQSLFGQPQSQSLFGQPQSQSLFGSTPQSQSLFGQPQSQSLFG
QPQSQSLFAQSSQSLFGQSSQSLFGQSQSSLFGQPQSSASLFGAQSQSIW
GQSSSGFGGSSMFGASQPQMAQQQQQQPLRLPRKLTDVIEKLNPLHPESK
FHTALYNSVAPGDISRYTRPGNMDEKLWDEAVERNPDPSRLVPVQANLFD
DLIQRSNMQTKRVEEHLLVLSKIEQLIKNIDGEMDTEISTKLAAYRRRHR
ELARKLLRIASSVELEASNIDSSGVLTPTESERKKRLDTIARALAAPAEF
KDKLSDLVEIAESTVLNRQTQPTVEIRDPKAANAIKQLLNDQLQGIQHLS
HVCERADRDISIMTTALDR*

mRNA from alignment at tig00000170_pilon:124240..125499+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9852.t1 ID=Ggra9852.t1|Name=Ggra9852.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1260bp|location=Sequence derived from alignment at tig00000170_pilon:124240..125499+ (Gracilaria gracilis GNS1m male)
ATGGCGTTCAACTTTGGCGGCCCCAGCCAGGCACAGTCTTCGTTCGGCTT
TGGCGCCTCGAGCCAGCCACAAGCTACCTTTGGCTTCGGCGCCTCAAGTC
AAGCCCCTGGTTCGTTTGGATTCGGGGCTTCTCAACCGCAATCGCAATCA
TTGTTCGGATCTACTCCGCAATCACAGTCACTGTTCGGTCAACCGCAGTC
GCAATCTTTGTTTGGGCAGCCGCAATCGCAATCATTGTTCGGATCAACTC
CGCAATCACAGTCTCTGTTCGGTCAACCGCAGTCGCAATCTTTGTTTGGG
CAGCCGCAATCACAATCCCTTTTTGCACAATCAAGCCAGTCGCTTTTTGG
GCAGTCAAGCCAATCGCTTTTCGGGCAATCACAGTCGAGTCTGTTTGGAC
AGCCTCAGTCGAGTGCTAGTTTGTTTGGGGCACAGAGTCAGTCCATATGG
GGTCAATCGTCGTCTGGGTTTGGTGGATCCTCAATGTTCGGTGCGTCGCA
ACCACAAATGGCACAGCAACAACAGCAGCAGCCCTTGCGTCTTCCTCGTA
AATTGACCGATGTCATCGAAAAGCTCAACCCATTACATCCTGAATCCAAG
TTTCACACCGCTCTGTACAACAGCGTAGCACCCGGCGATATTTCAAGATA
CACACGACCTGGTAATATGGACGAAAAACTCTGGGATGAAGCTGTGGAAA
GAAATCCCGATCCGTCGCGTCTCGTTCCCGTACAAGCGAATCTTTTTGAC
GATCTTATTCAACGATCTAATATGCAAACAAAGCGAGTTGAGGAACATCT
CCTCGTTCTCTCCAAAATTGAACAACTCATCAAGAACATCGATGGAGAAA
TGGATACAGAAATATCCACCAAACTTGCGGCATACAGACGAAGACATCGC
GAACTCGCGCGCAAGTTGTTGAGAATTGCCTCTAGTGTGGAATTGGAGGC
TTCTAACATTGACTCCAGTGGTGTGCTAACGCCGACGGAAAGCGAGCGAA
AGAAGAGATTGGATACGATTGCGAGAGCGCTGGCAGCTCCTGCTGAATTC
AAAGACAAACTGAGTGACTTGGTTGAGATTGCCGAATCCACTGTGTTGAA
TCGACAGACACAACCAACTGTTGAGATTCGAGATCCCAAAGCCGCAAACG
CTATCAAACAGCTGTTGAACGATCAACTGCAAGGGATTCAACATCTCAGT
CATGTCTGCGAACGTGCTGATAGAGACATTTCTATCATGACGACTGCGTT
GGATCGATGA

Coding sequence (CDS) from alignment at tig00000170_pilon:124240..125499+

>Ggra9852.t1 ID=Ggra9852.t1|Name=Ggra9852.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1260bp|location=Sequence derived from alignment at tig00000170_pilon:124240..125499+ (Gracilaria gracilis GNS1m male)
ATGGCGTTCAACTTTGGCGGCCCCAGCCAGGCACAGTCTTCGTTCGGCTT
TGGCGCCTCGAGCCAGCCACAAGCTACCTTTGGCTTCGGCGCCTCAAGTC
AAGCCCCTGGTTCGTTTGGATTCGGGGCTTCTCAACCGCAATCGCAATCA
TTGTTCGGATCTACTCCGCAATCACAGTCACTGTTCGGTCAACCGCAGTC
GCAATCTTTGTTTGGGCAGCCGCAATCGCAATCATTGTTCGGATCAACTC
CGCAATCACAGTCTCTGTTCGGTCAACCGCAGTCGCAATCTTTGTTTGGG
CAGCCGCAATCACAATCCCTTTTTGCACAATCAAGCCAGTCGCTTTTTGG
GCAGTCAAGCCAATCGCTTTTCGGGCAATCACAGTCGAGTCTGTTTGGAC
AGCCTCAGTCGAGTGCTAGTTTGTTTGGGGCACAGAGTCAGTCCATATGG
GGTCAATCGTCGTCTGGGTTTGGTGGATCCTCAATGTTCGGTGCGTCGCA
ACCACAAATGGCACAGCAACAACAGCAGCAGCCCTTGCGTCTTCCTCGTA
AATTGACCGATGTCATCGAAAAGCTCAACCCATTACATCCTGAATCCAAG
TTTCACACCGCTCTGTACAACAGCGTAGCACCCGGCGATATTTCAAGATA
CACACGACCTGGTAATATGGACGAAAAACTCTGGGATGAAGCTGTGGAAA
GAAATCCCGATCCGTCGCGTCTCGTTCCCGTACAAGCGAATCTTTTTGAC
GATCTTATTCAACGATCTAATATGCAAACAAAGCGAGTTGAGGAACATCT
CCTCGTTCTCTCCAAAATTGAACAACTCATCAAGAACATCGATGGAGAAA
TGGATACAGAAATATCCACCAAACTTGCGGCATACAGACGAAGACATCGC
GAACTCGCGCGCAAGTTGTTGAGAATTGCCTCTAGTGTGGAATTGGAGGC
TTCTAACATTGACTCCAGTGGTGTGCTAACGCCGACGGAAAGCGAGCGAA
AGAAGAGATTGGATACGATTGCGAGAGCGCTGGCAGCTCCTGCTGAATTC
AAAGACAAACTGAGTGACTTGGTTGAGATTGCCGAATCCACTGTGTTGAA
TCGACAGACACAACCAACTGTTGAGATTCGAGATCCCAAAGCCGCAAACG
CTATCAAACAGCTGTTGAACGATCAACTGCAAGGGATTCAACATCTCAGT
CATGTCTGCGAACGTGCTGATAGAGACATTTCTATCATGACGACTGCGTT
GGATCGATGA