Ggra985.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra985.t1
Unique NameGgra985.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length239
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000027_piloncontigtig00000027_pilon:63985..64701 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1128421.JAGA01000002_gene938
Preferred namefolE
PFAMsGTP_cyclohydroI
Max annot lvl2|Bacteria
KEGG rclassRC00263,RC00294,RC00323,RC00945,RC01188
KEGG koko:K01495
KEGG ReactionR00428,R04639,R05046,R05048
KEGG Pathwayko00790,ko01100,map00790,map01100
KEGG ModuleM00126,M00841,M00842,M00843
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003933,GO:0003934,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006066,GO:0006725,GO:0006729,GO:0006732,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009108,GO:0009987,GO:0016787,GO:0016810,GO:0016814,GO:0017076,GO:0017144,GO:0018130,GO:0019001,GO:0019238,GO:0019438,GO:0019751,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034311,GO:0034312,GO:0034641,GO:0035639,GO:0036094,GO:0042558,GO:0042559,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046146,GO:0046165,GO:0046173,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617
Evalue3.79e-66
EggNOG OGsCOG0302@1|root,COG0302@2|Bacteria,2NPAT@2323|unclassified Bacteria
EC3.5.4.16
DescriptionGTP cyclohydrolase I
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra985Ggra985Gracilaria gracilis GNS1m malegenetig00000027_pilon 63985..64701 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra985.t1.stop1Ggra985.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000027_pilon 63985..63987 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra985.t1.CDS1Ggra985.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000027_pilon 63985..64701 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra985.t1.exon1Ggra985.t1.exon1Gracilaria gracilis GNS1m maleexontig00000027_pilon 63985..64701 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra985.t1.start1Ggra985.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000027_pilon 64699..64701 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra985.t1Ggra985.t1Gracilaria gracilis GNS1m malepolypeptidetig00000027_pilon 63985..64701 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra985.t1 ID=Ggra985.t1|Name=Ggra985.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=239bp
MERLRKEESVVPQLANGHPPCKKRPRIDDEDAAASPVAALVAVSKSQAQP
VDTPSAAAAVHSLLRSLGEDPSRPGLQNTPRRVAEMFSELLSGYRTDPTK
LLNGALFEEAANDLVLIRNMRFFSMCEHHLLTFSGKVHVAYVPSGRVIGL
SKVPRIVEMFARRLQLQERLTAQIAEFLNHVLQPSALAVVIDGSHLCATI
RGVRSPEASVTTSVMLGDFKHDASLRTQFWSQLRSVSQ*
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spliced messenger RNA

>Ggra985.t1 ID=Ggra985.t1|Name=Ggra985.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=717bp|location=Sequence derived from alignment at tig00000027_pilon:63985..64701- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCGCTTGCGAAAAGAAGAGTCCGTCGTGCCGCAGTTGGCCAACGG
CCACCCGCCGTGCAAGAAGCGCCCACGAATTGACGACGAGGACGCGGCTG
CATCGCCTGTGGCCGCGCTGGTCGCCGTGTCCAAGTCGCAGGCGCAGCCG
GTTGACACGCCGTCTGCCGCCGCCGCCGTCCACTCCCTTCTGCGCTCGCT
TGGCGAGGATCCGTCGCGCCCTGGTCTGCAGAACACCCCGCGTCGCGTCG
CGGAGATGTTCTCCGAGCTGCTGTCCGGCTACAGAACTGACCCCACCAAA
CTGCTCAACGGCGCCTTGTTCGAGGAGGCTGCCAACGACCTGGTGCTCAT
CCGTAACATGCGCTTCTTCTCCATGTGTGAACATCATTTACTCACTTTTT
CCGGCAAGGTGCATGTGGCCTACGTCCCGTCTGGCCGAGTCATCGGTCTC
AGTAAGGTGCCTCGTATCGTAGAGATGTTTGCCAGAAGACTGCAGCTGCA
GGAACGTCTCACCGCGCAGATTGCAGAGTTTCTCAACCACGTCCTACAAC
CGTCAGCGCTCGCCGTCGTCATCGATGGCTCGCATTTATGCGCCACCATC
CGTGGCGTAAGAAGTCCGGAAGCTTCCGTCACCACCTCTGTCATGCTCGG
CGACTTCAAGCATGACGCCTCACTACGCACTCAGTTCTGGAGCCAGCTTC
GAAGCGTGTCTCAGTAA
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protein sequence of Ggra985.t1

>Ggra985.t1 ID=Ggra985.t1|Name=Ggra985.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=239bp
MERLRKEESVVPQLANGHPPCKKRPRIDDEDAAASPVAALVAVSKSQAQP
VDTPSAAAAVHSLLRSLGEDPSRPGLQNTPRRVAEMFSELLSGYRTDPTK
LLNGALFEEAANDLVLIRNMRFFSMCEHHLLTFSGKVHVAYVPSGRVIGL
SKVPRIVEMFARRLQLQERLTAQIAEFLNHVLQPSALAVVIDGSHLCATI
RGVRSPEASVTTSVMLGDFKHDASLRTQFWSQLRSVSQ*
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mRNA from alignment at tig00000027_pilon:63985..64701-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra985.t1 ID=Ggra985.t1|Name=Ggra985.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=717bp|location=Sequence derived from alignment at tig00000027_pilon:63985..64701- (Gracilaria gracilis GNS1m male)
ATGGAGCGCTTGCGAAAAGAAGAGTCCGTCGTGCCGCAGTTGGCCAACGG
CCACCCGCCGTGCAAGAAGCGCCCACGAATTGACGACGAGGACGCGGCTG
CATCGCCTGTGGCCGCGCTGGTCGCCGTGTCCAAGTCGCAGGCGCAGCCG
GTTGACACGCCGTCTGCCGCCGCCGCCGTCCACTCCCTTCTGCGCTCGCT
TGGCGAGGATCCGTCGCGCCCTGGTCTGCAGAACACCCCGCGTCGCGTCG
CGGAGATGTTCTCCGAGCTGCTGTCCGGCTACAGAACTGACCCCACCAAA
CTGCTCAACGGCGCCTTGTTCGAGGAGGCTGCCAACGACCTGGTGCTCAT
CCGTAACATGCGCTTCTTCTCCATGTGTGAACATCATTTACTCACTTTTT
CCGGCAAGGTGCATGTGGCCTACGTCCCGTCTGGCCGAGTCATCGGTCTC
AGTAAGGTGCCTCGTATCGTAGAGATGTTTGCCAGAAGACTGCAGCTGCA
GGAACGTCTCACCGCGCAGATTGCAGAGTTTCTCAACCACGTCCTACAAC
CGTCAGCGCTCGCCGTCGTCATCGATGGCTCGCATTTATGCGCCACCATC
CGTGGCGTAAGAAGTCCGGAAGCTTCCGTCACCACCTCTGTCATGCTCGG
CGACTTCAAGCATGACGCCTCACTACGCACTCAGTTCTGGAGCCAGCTTC
GAAGCGTGTCTCAGTAA
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Coding sequence (CDS) from alignment at tig00000027_pilon:63985..64701-

>Ggra985.t1 ID=Ggra985.t1|Name=Ggra985.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=717bp|location=Sequence derived from alignment at tig00000027_pilon:63985..64701- (Gracilaria gracilis GNS1m male)
ATGGAGCGCTTGCGAAAAGAAGAGTCCGTCGTGCCGCAGTTGGCCAACGG
CCACCCGCCGTGCAAGAAGCGCCCACGAATTGACGACGAGGACGCGGCTG
CATCGCCTGTGGCCGCGCTGGTCGCCGTGTCCAAGTCGCAGGCGCAGCCG
GTTGACACGCCGTCTGCCGCCGCCGCCGTCCACTCCCTTCTGCGCTCGCT
TGGCGAGGATCCGTCGCGCCCTGGTCTGCAGAACACCCCGCGTCGCGTCG
CGGAGATGTTCTCCGAGCTGCTGTCCGGCTACAGAACTGACCCCACCAAA
CTGCTCAACGGCGCCTTGTTCGAGGAGGCTGCCAACGACCTGGTGCTCAT
CCGTAACATGCGCTTCTTCTCCATGTGTGAACATCATTTACTCACTTTTT
CCGGCAAGGTGCATGTGGCCTACGTCCCGTCTGGCCGAGTCATCGGTCTC
AGTAAGGTGCCTCGTATCGTAGAGATGTTTGCCAGAAGACTGCAGCTGCA
GGAACGTCTCACCGCGCAGATTGCAGAGTTTCTCAACCACGTCCTACAAC
CGTCAGCGCTCGCCGTCGTCATCGATGGCTCGCATTTATGCGCCACCATC
CGTGGCGTAAGAAGTCCGGAAGCTTCCGTCACCACCTCTGTCATGCTCGG
CGACTTCAAGCATGACGCCTCACTACGCACTCAGTTCTGGAGCCAGCTTC
GAAGCGTGTCTCAGTAA
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