Ggra9847.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9847.t1
Unique Name	Ggra9847.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	276

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000170_pilon	contig	tig00000170_pilon:63369..64196 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1094466.KQS_08390
PFAMs	adh_short
Max annot lvl	976\|Bacteroidetes
KEGG ko	ko:K07124
Evalue	2.8e-49
EggNOG OGs	COG0300@1\|root,COG0300@2\|Bacteria,4NKNE@976\|Bacteroidetes,1IMIN@117743\|Flavobacteriia,2NTWH@237\|Flavobacterium
Description	Belongs to the short-chain dehydrogenases reductases (SDR) family
COG category	S
BRITE	ko00000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9847	Ggra9847	Gracilaria gracilis GNS1m male	gene	tig00000170_pilon 63369..64196 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9847.t1.start1	Ggra9847.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000170_pilon 63369..63371 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9847.t1.CDS1	Ggra9847.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000170_pilon 63369..64196 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9847.t1.exon1	Ggra9847.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000170_pilon 63369..64196 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9847.t1.stop1	Ggra9847.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000170_pilon 64194..64196 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9847.t1	Ggra9847.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000170_pilon 63369..64196 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000170_pilon:63369..64196+
coding sequence from alignment at tig00000170_pilon:63369..64196+

mRNA sequence

>Ggra9847.t1 ID=Ggra9847.t1|Name=Ggra9847.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=276bp
MGVPSNFVEKYGPWALVTGASGGIGAEFANQLAAAGLNVVLVARREAVLN
EQASSLREQHNVQTRSVAADLTSDEGCEQVVAECEDIEIGLLVNNAGIEL
HGSFFKDSAPKHGKLLDLNCKALVSLSHSFGRMMIDRKKGGIIFISSCLS
SPMSYFATYSASKSFVTCFGRVLREELKKYSVDATVIEPGVVDSDMSRAA
KKDMDFDKGGFSTMPAQQCVTESISAFAAGRAVYIPGLQNKVSMSVMRSI
PADLAMKMGSVVVDRMMDPELMKPM*

spliced messenger RNA

>Ggra9847.t1 ID=Ggra9847.t1|Name=Ggra9847.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=828bp|location=Sequence derived from alignment at tig00000170_pilon:63369..64196+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGGTTCCATCTAATTTTGTCGAGAAGTATGGACCGTGGGCGCTTGT
CACTGGAGCATCGGGTGGTATTGGCGCTGAGTTTGCCAATCAATTGGCGG
CAGCAGGCTTGAACGTGGTGCTAGTCGCACGTCGTGAAGCCGTTTTAAAC
GAACAAGCATCCTCGCTTCGTGAACAGCACAACGTGCAAACTCGATCTGT
CGCAGCTGACCTTACGTCCGATGAAGGGTGCGAGCAGGTTGTTGCAGAAT
GTGAAGACATTGAGATCGGTCTGCTCGTCAACAACGCTGGTATAGAACTA
CATGGATCGTTCTTCAAGGATTCTGCTCCAAAGCACGGAAAGTTGCTTGA
TTTGAATTGCAAGGCCCTTGTATCGCTGAGTCATTCGTTTGGACGAATGA
TGATTGACAGAAAGAAAGGTGGTATTATATTCATAAGCAGCTGCCTCTCC
TCTCCCATGTCATACTTTGCCACCTATAGCGCGTCAAAGAGTTTTGTAAC
TTGTTTCGGAAGAGTTTTGAGGGAGGAACTTAAGAAATACAGTGTAGACG
CCACAGTGATTGAACCTGGCGTGGTGGACAGTGATATGAGTCGTGCGGCG
AAGAAGGACATGGATTTTGACAAGGGCGGCTTCTCGACCATGCCTGCTCA
GCAATGTGTTACTGAATCTATCTCTGCGTTTGCTGCTGGAAGAGCTGTTT
ACATTCCGGGATTGCAGAACAAGGTTTCTATGAGTGTGATGAGATCAATT
CCTGCTGATTTGGCAATGAAAATGGGAAGTGTTGTGGTCGATCGAATGAT
GGATCCTGAGCTGATGAAGCCGATGTAG

protein sequence of Ggra9847.t1

>Ggra9847.t1 ID=Ggra9847.t1|Name=Ggra9847.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=276bp
MGVPSNFVEKYGPWALVTGASGGIGAEFANQLAAAGLNVVLVARREAVLN
EQASSLREQHNVQTRSVAADLTSDEGCEQVVAECEDIEIGLLVNNAGIEL
HGSFFKDSAPKHGKLLDLNCKALVSLSHSFGRMMIDRKKGGIIFISSCLS
SPMSYFATYSASKSFVTCFGRVLREELKKYSVDATVIEPGVVDSDMSRAA
KKDMDFDKGGFSTMPAQQCVTESISAFAAGRAVYIPGLQNKVSMSVMRSI
PADLAMKMGSVVVDRMMDPELMKPM*

mRNA from alignment at tig00000170_pilon:63369..64196+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9847.t1 ID=Ggra9847.t1|Name=Ggra9847.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=828bp|location=Sequence derived from alignment at tig00000170_pilon:63369..64196+ (Gracilaria gracilis GNS1m male)
ATGGGGGTTCCATCTAATTTTGTCGAGAAGTATGGACCGTGGGCGCTTGT
CACTGGAGCATCGGGTGGTATTGGCGCTGAGTTTGCCAATCAATTGGCGG
CAGCAGGCTTGAACGTGGTGCTAGTCGCACGTCGTGAAGCCGTTTTAAAC
GAACAAGCATCCTCGCTTCGTGAACAGCACAACGTGCAAACTCGATCTGT
CGCAGCTGACCTTACGTCCGATGAAGGGTGCGAGCAGGTTGTTGCAGAAT
GTGAAGACATTGAGATCGGTCTGCTCGTCAACAACGCTGGTATAGAACTA
CATGGATCGTTCTTCAAGGATTCTGCTCCAAAGCACGGAAAGTTGCTTGA
TTTGAATTGCAAGGCCCTTGTATCGCTGAGTCATTCGTTTGGACGAATGA
TGATTGACAGAAAGAAAGGTGGTATTATATTCATAAGCAGCTGCCTCTCC
TCTCCCATGTCATACTTTGCCACCTATAGCGCGTCAAAGAGTTTTGTAAC
TTGTTTCGGAAGAGTTTTGAGGGAGGAACTTAAGAAATACAGTGTAGACG
CCACAGTGATTGAACCTGGCGTGGTGGACAGTGATATGAGTCGTGCGGCG
AAGAAGGACATGGATTTTGACAAGGGCGGCTTCTCGACCATGCCTGCTCA
GCAATGTGTTACTGAATCTATCTCTGCGTTTGCTGCTGGAAGAGCTGTTT
ACATTCCGGGATTGCAGAACAAGGTTTCTATGAGTGTGATGAGATCAATT
CCTGCTGATTTGGCAATGAAAATGGGAAGTGTTGTGGTCGATCGAATGAT
GGATCCTGAGCTGATGAAGCCGATGTAG

Coding sequence (CDS) from alignment at tig00000170_pilon:63369..64196+

>Ggra9847.t1 ID=Ggra9847.t1|Name=Ggra9847.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=828bp|location=Sequence derived from alignment at tig00000170_pilon:63369..64196+ (Gracilaria gracilis GNS1m male)
ATGGGGGTTCCATCTAATTTTGTCGAGAAGTATGGACCGTGGGCGCTTGT
CACTGGAGCATCGGGTGGTATTGGCGCTGAGTTTGCCAATCAATTGGCGG
CAGCAGGCTTGAACGTGGTGCTAGTCGCACGTCGTGAAGCCGTTTTAAAC
GAACAAGCATCCTCGCTTCGTGAACAGCACAACGTGCAAACTCGATCTGT
CGCAGCTGACCTTACGTCCGATGAAGGGTGCGAGCAGGTTGTTGCAGAAT
GTGAAGACATTGAGATCGGTCTGCTCGTCAACAACGCTGGTATAGAACTA
CATGGATCGTTCTTCAAGGATTCTGCTCCAAAGCACGGAAAGTTGCTTGA
TTTGAATTGCAAGGCCCTTGTATCGCTGAGTCATTCGTTTGGACGAATGA
TGATTGACAGAAAGAAAGGTGGTATTATATTCATAAGCAGCTGCCTCTCC
TCTCCCATGTCATACTTTGCCACCTATAGCGCGTCAAAGAGTTTTGTAAC
TTGTTTCGGAAGAGTTTTGAGGGAGGAACTTAAGAAATACAGTGTAGACG
CCACAGTGATTGAACCTGGCGTGGTGGACAGTGATATGAGTCGTGCGGCG
AAGAAGGACATGGATTTTGACAAGGGCGGCTTCTCGACCATGCCTGCTCA
GCAATGTGTTACTGAATCTATCTCTGCGTTTGCTGCTGGAAGAGCTGTTT
ACATTCCGGGATTGCAGAACAAGGTTTCTATGAGTGTGATGAGATCAATT
CCTGCTGATTTGGCAATGAAAATGGGAAGTGTTGTGGTCGATCGAATGAT
GGATCCTGAGCTGATGAAGCCGATGTAG