Ggra9841.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9841.t1
Unique NameGgra9841.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length204
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000170_piloncontigtig00000170_pilon:51211..51822 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706909.1
Preferred nameASMTL
PFAMsDimerisation2,Maf,Methyltransf_2
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00523
KEGG koko:K01868,ko:K06287
KEGG ReactionR03663
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464
Evalue1.5e-56
EggNOG OGsCOG0424@1|root,KOG1509@2759|Eukaryota
EC6.1.1.3
Descriptionnucleoside-triphosphate diphosphatase activity
COG categoryD
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9841Ggra9841Gracilaria gracilis GNS1m malegenetig00000170_pilon 51211..51822 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9841.t1.start1Ggra9841.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000170_pilon 51211..51213 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9841.t1.CDS1Ggra9841.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000170_pilon 51211..51822 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9841.t1.exon1Ggra9841.t1.exon1Gracilaria gracilis GNS1m maleexontig00000170_pilon 51211..51822 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9841.t1.stop1Ggra9841.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000170_pilon 51820..51822 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9841.t1Ggra9841.t1Gracilaria gracilis GNS1m malepolypeptidetig00000170_pilon 51211..51822 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9841.t1 ID=Ggra9841.t1|Name=Ggra9841.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=204bp
MIIDLLPHLRQKRVVLASQSPRRREILQLIGLEFVSEASSFAEDLVKSNF
ANPNGYAQKTAEEKALDVWRKHQDVDLVIGSDTIVVLEGKILEKPTSEAD
ALQMLRSLSGRWHIVITAVAFVCKGELRSFCEEAKVCFDNLTDDMISAYV
KTGEPMDKAGAYGIQGRGGAFVKRIDGCYFCVMGLPMNAVSTKLRQLVED
GLL*
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spliced messenger RNA

>Ggra9841.t1 ID=Ggra9841.t1|Name=Ggra9841.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=612bp|location=Sequence derived from alignment at tig00000170_pilon:51211..51822+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCATTGATCTGCTACCGCATCTAAGACAGAAACGAGTGGTTTTGGC
AAGTCAATCTCCTCGCCGTCGAGAAATTCTTCAACTAATTGGTTTGGAGT
TTGTCTCCGAAGCTTCATCTTTTGCAGAGGATTTGGTCAAGTCCAACTTT
GCCAATCCGAACGGATACGCTCAAAAAACGGCAGAAGAAAAGGCCCTAGA
CGTATGGAGAAAGCATCAGGACGTTGATCTAGTGATCGGTTCCGATACAA
TCGTAGTTTTGGAAGGAAAAATATTGGAGAAGCCTACTTCCGAAGCAGAT
GCTTTACAAATGCTGAGAAGTTTAAGCGGACGATGGCATATCGTGATAAC
AGCCGTAGCTTTTGTTTGCAAAGGGGAACTCAGAAGCTTTTGTGAGGAAG
CAAAGGTATGCTTCGACAATCTGACAGATGATATGATATCTGCATACGTG
AAGACTGGGGAACCAATGGACAAAGCGGGAGCGTACGGAATTCAAGGTCG
AGGTGGTGCTTTTGTGAAGAGGATTGATGGATGCTATTTTTGTGTTATGG
GTTTGCCTATGAATGCGGTCAGCACAAAGCTTCGGCAACTTGTCGAGGAC
GGTTTGTTGTAA
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protein sequence of Ggra9841.t1

>Ggra9841.t1 ID=Ggra9841.t1|Name=Ggra9841.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=204bp
MIIDLLPHLRQKRVVLASQSPRRREILQLIGLEFVSEASSFAEDLVKSNF
ANPNGYAQKTAEEKALDVWRKHQDVDLVIGSDTIVVLEGKILEKPTSEAD
ALQMLRSLSGRWHIVITAVAFVCKGELRSFCEEAKVCFDNLTDDMISAYV
KTGEPMDKAGAYGIQGRGGAFVKRIDGCYFCVMGLPMNAVSTKLRQLVED
GLL*
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mRNA from alignment at tig00000170_pilon:51211..51822+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9841.t1 ID=Ggra9841.t1|Name=Ggra9841.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=612bp|location=Sequence derived from alignment at tig00000170_pilon:51211..51822+ (Gracilaria gracilis GNS1m male)
ATGATCATTGATCTGCTACCGCATCTAAGACAGAAACGAGTGGTTTTGGC
AAGTCAATCTCCTCGCCGTCGAGAAATTCTTCAACTAATTGGTTTGGAGT
TTGTCTCCGAAGCTTCATCTTTTGCAGAGGATTTGGTCAAGTCCAACTTT
GCCAATCCGAACGGATACGCTCAAAAAACGGCAGAAGAAAAGGCCCTAGA
CGTATGGAGAAAGCATCAGGACGTTGATCTAGTGATCGGTTCCGATACAA
TCGTAGTTTTGGAAGGAAAAATATTGGAGAAGCCTACTTCCGAAGCAGAT
GCTTTACAAATGCTGAGAAGTTTAAGCGGACGATGGCATATCGTGATAAC
AGCCGTAGCTTTTGTTTGCAAAGGGGAACTCAGAAGCTTTTGTGAGGAAG
CAAAGGTATGCTTCGACAATCTGACAGATGATATGATATCTGCATACGTG
AAGACTGGGGAACCAATGGACAAAGCGGGAGCGTACGGAATTCAAGGTCG
AGGTGGTGCTTTTGTGAAGAGGATTGATGGATGCTATTTTTGTGTTATGG
GTTTGCCTATGAATGCGGTCAGCACAAAGCTTCGGCAACTTGTCGAGGAC
GGTTTGTTGTAA
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Coding sequence (CDS) from alignment at tig00000170_pilon:51211..51822+

>Ggra9841.t1 ID=Ggra9841.t1|Name=Ggra9841.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=612bp|location=Sequence derived from alignment at tig00000170_pilon:51211..51822+ (Gracilaria gracilis GNS1m male)
ATGATCATTGATCTGCTACCGCATCTAAGACAGAAACGAGTGGTTTTGGC
AAGTCAATCTCCTCGCCGTCGAGAAATTCTTCAACTAATTGGTTTGGAGT
TTGTCTCCGAAGCTTCATCTTTTGCAGAGGATTTGGTCAAGTCCAACTTT
GCCAATCCGAACGGATACGCTCAAAAAACGGCAGAAGAAAAGGCCCTAGA
CGTATGGAGAAAGCATCAGGACGTTGATCTAGTGATCGGTTCCGATACAA
TCGTAGTTTTGGAAGGAAAAATATTGGAGAAGCCTACTTCCGAAGCAGAT
GCTTTACAAATGCTGAGAAGTTTAAGCGGACGATGGCATATCGTGATAAC
AGCCGTAGCTTTTGTTTGCAAAGGGGAACTCAGAAGCTTTTGTGAGGAAG
CAAAGGTATGCTTCGACAATCTGACAGATGATATGATATCTGCATACGTG
AAGACTGGGGAACCAATGGACAAAGCGGGAGCGTACGGAATTCAAGGTCG
AGGTGGTGCTTTTGTGAAGAGGATTGATGGATGCTATTTTTGTGTTATGG
GTTTGCCTATGAATGCGGTCAGCACAAAGCTTCGGCAACTTGTCGAGGAC
GGTTTGTTGTAA
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