Ggra984.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra984.t1
Unique NameGgra984.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length221
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000027_piloncontigtig00000027_pilon:62301..63224 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra984Ggra984Gracilaria gracilis GNS1m malegenetig00000027_pilon 62301..63224 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra984.t1Ggra984.t1Gracilaria gracilis GNS1m malepolypeptidetig00000027_pilon 62301..63224 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra984.t1.start1Ggra984.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000027_pilon 62301..62303 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra984.t1.CDS1Ggra984.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000027_pilon 62301..62524 +
Ggra984.t1.CDS2Ggra984.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000027_pilon 62786..63224 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra984.t1.exon1Ggra984.t1.exon1Gracilaria gracilis GNS1m maleexontig00000027_pilon 62301..62524 +
Ggra984.t1.exon2Ggra984.t1.exon2Gracilaria gracilis GNS1m maleexontig00000027_pilon 62786..63224 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra984.t1.intron1Ggra984.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000027_pilon 62525..62785 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra984.t1.stop1Ggra984.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000027_pilon 63222..63224 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra984.t1 ID=Ggra984.t1|Name=Ggra984.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=221bp
MRPVSRTPLSALDRSLASGLLSRPPFVREAYVSSSRDEGNGKPSVSQERC
RAPSPTEVPASITLAWEISGVPRRGRPTQHQLQSQSSQKLYQDRDHSRHH
RCPKPGQQPSNPSRQAELVEWAAWAGQVDAAATGDPAVGETLAEQAGTGV
AVGLVHRVDLAGKEAQVSCRVEEEEVVDLEVATAEWGEWEGLPSDPEESA
VTEGPEVRGVEWRSAEWDSE*
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spliced messenger RNA

>Ggra984.t1 ID=Ggra984.t1|Name=Ggra984.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=663bp|location=Sequence derived from alignment at tig00000027_pilon:62301..63224+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGACCGGTGTCTCGAACTCCACTTTCTGCGCTGGACAGAAGTTTGGC
TTCTGGCCTTCTCTCGCGCCCGCCCTTTGTTCGTGAAGCATATGTAAGCA
GTAGCAGAGATGAAGGCAACGGTAAACCATCCGTCTCTCAGGAACGTTGC
AGGGCTCCCTCTCCTACAGAAGTTCCTGCCAGTATCACGCTAGCATGGGA
GATATCAGGGGTACCTCGGCGGGGACGTCCAACACAACATCAGCTGCAGT
CGCAGTCTTCCCAGAAGCTCTACCAGGACCGGGACCACTCACGACATCAC
CGCTGCCCCAAGCCGGGGCAACAGCCATCCAACCCCTCACGACAGGCGGA
ATTGGTGGAGTGGGCGGCATGGGCGGGCCAGGTGGACGCGGCGGCAACGG
GGGACCCGGCGGTAGGGGAGACATTGGCGGAGCAGGCGGGAACGGGGGTG
GCGGTGGGCTTGGTGCACCGGGTGGATCTGGCGGGCAAGGAGGCGCAGGT
ATCGTGCAGGGTGGAAGAGGAGGAAGTGGTGGACTTGGAGGTGGCGACGG
CGGAATGGGGGGAATGGGAGGGGCTGCCGTCGGACCCGGAGGAGTCGGCG
GTGACGGAGGGGCCGGAGGTGCGGGGGGTGGAGTGGAGATCGGCGGAATG
GGATTCGGAGTAG
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protein sequence of Ggra984.t1

>Ggra984.t1 ID=Ggra984.t1|Name=Ggra984.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=221bp
MRPVSRTPLSALDRSLASGLLSRPPFVREAYVSSSRDEGNGKPSVSQERC
RAPSPTEVPASITLAWEISGVPRRGRPTQHQLQSQSSQKLYQDRDHSRHH
RCPKPGQQPSNPSRQAELVEWAAWAGQVDAAATGDPAVGETLAEQAGTGV
AVGLVHRVDLAGKEAQVSCRVEEEEVVDLEVATAEWGEWEGLPSDPEESA
VTEGPEVRGVEWRSAEWDSE*
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mRNA from alignment at tig00000027_pilon:62301..63224+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra984.t1 ID=Ggra984.t1|Name=Ggra984.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=924bp|location=Sequence derived from alignment at tig00000027_pilon:62301..63224+ (Gracilaria gracilis GNS1m male)
ATGAGACCGGTGTCTCGAACTCCACTTTCTGCGCTGGACAGAAGTTTGGC
TTCTGGCCTTCTCTCGCGCCCGCCCTTTGTTCGTGAAGCATATGTAAGCA
GTAGCAGAGATGAAGGCAACGGTAAACCATCCGTCTCTCAGGAACGTTGC
AGGGCTCCCTCTCCTACAGAAGTTCCTGCCAGTATCACGCTAGCATGGGA
GATATCAGGGGTACCTCGGCGGGGGTAATACTGACCCTCTTGTGTGTGGC
CGTGGCAAACGCAGCTGTACTCAGACCGCCAGAACTATCTTCAGAAGAAT
GCGAAGCACTGCGTAGACGAAAAGCAGCGGCGAAGGCGGCCGCGGTGCTA
GACGCAGCGGCAAGCGACAGCACAGCACTGGAACCAGAATATGTAACCAC
ACAGGGGATATGGGAAGAGCAAACAGTCACACAGCAACCACTTGTCGGAA
AAGAGCCTACTCTCGTTCCATTAACACTCCAGCAGACGTCCAACACAACA
TCAGCTGCAGTCGCAGTCTTCCCAGAAGCTCTACCAGGACCGGGACCACT
CACGACATCACCGCTGCCCCAAGCCGGGGCAACAGCCATCCAACCCCTCA
CGACAGGCGGAATTGGTGGAGTGGGCGGCATGGGCGGGCCAGGTGGACGC
GGCGGCAACGGGGGACCCGGCGGTAGGGGAGACATTGGCGGAGCAGGCGG
GAACGGGGGTGGCGGTGGGCTTGGTGCACCGGGTGGATCTGGCGGGCAAG
GAGGCGCAGGTATCGTGCAGGGTGGAAGAGGAGGAAGTGGTGGACTTGGA
GGTGGCGACGGCGGAATGGGGGGAATGGGAGGGGCTGCCGTCGGACCCGG
AGGAGTCGGCGGTGACGGAGGGGCCGGAGGTGCGGGGGGTGGAGTGGAGA
TCGGCGGAATGGGATTCGGAGTAG
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Coding sequence (CDS) from alignment at tig00000027_pilon:62301..63224+

>Ggra984.t1 ID=Ggra984.t1|Name=Ggra984.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=663bp|location=Sequence derived from alignment at tig00000027_pilon:62301..63224+ (Gracilaria gracilis GNS1m male)
ATGAGACCGGTGTCTCGAACTCCACTTTCTGCGCTGGACAGAAGTTTGGC
TTCTGGCCTTCTCTCGCGCCCGCCCTTTGTTCGTGAAGCATATGTAAGCA
GTAGCAGAGATGAAGGCAACGGTAAACCATCCGTCTCTCAGGAACGTTGC
AGGGCTCCCTCTCCTACAGAAGTTCCTGCCAGTATCACGCTAGCATGGGA
GATATCAGGGGTACCTCGGCGGGGACGTCCAACACAACATCAGCTGCAGT
CGCAGTCTTCCCAGAAGCTCTACCAGGACCGGGACCACTCACGACATCAC
CGCTGCCCCAAGCCGGGGCAACAGCCATCCAACCCCTCACGACAGGCGGA
ATTGGTGGAGTGGGCGGCATGGGCGGGCCAGGTGGACGCGGCGGCAACGG
GGGACCCGGCGGTAGGGGAGACATTGGCGGAGCAGGCGGGAACGGGGGTG
GCGGTGGGCTTGGTGCACCGGGTGGATCTGGCGGGCAAGGAGGCGCAGGT
ATCGTGCAGGGTGGAAGAGGAGGAAGTGGTGGACTTGGAGGTGGCGACGG
CGGAATGGGGGGAATGGGAGGGGCTGCCGTCGGACCCGGAGGAGTCGGCG
GTGACGGAGGGGCCGGAGGTGCGGGGGGTGGAGTGGAGATCGGCGGAATG
GGATTCGGAGTAG
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