Ggra9834.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9834.t1
Unique NameGgra9834.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length224
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000160_piloncontigtig00000160_pilon:227996..228743 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9834Ggra9834Gracilaria gracilis GNS1m malegenetig00000160_pilon 227996..228743 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9834.t1Ggra9834.t1Gracilaria gracilis GNS1m malepolypeptidetig00000160_pilon 227996..228743 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9834.t1.start1Ggra9834.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000160_pilon 227996..227998 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9834.t1.CDS1Ggra9834.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000160_pilon 227996..228350 +
Ggra9834.t1.CDS2Ggra9834.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000160_pilon 228427..228743 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9834.t1.exon1Ggra9834.t1.exon1Gracilaria gracilis GNS1m maleexontig00000160_pilon 227996..228350 +
Ggra9834.t1.exon2Ggra9834.t1.exon2Gracilaria gracilis GNS1m maleexontig00000160_pilon 228427..228743 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9834.t1.intron1Ggra9834.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000160_pilon 228351..228426 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9834.t1.stop1Ggra9834.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000160_pilon 228741..228743 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9834.t1 ID=Ggra9834.t1|Name=Ggra9834.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=224bp
MAFYDIIFRRNPRYSYDEDAEPLSGILRGPGPNDRRRPPKPSRRRVSFAF
EDASQKSPSSRRTRSDLSEESSYHSRPHRQRSDSFDSRDRVFQVFDDRIP
ESSSQTSSSVSSRHRRDVTLRLAAIEAVRPLADTKRARDGTRRPQTITET
VVTTSIHQDTIGSIVMMTTKSVTTGINMMKSVVNVKNVVRGATPPESAEA
GQGITEKGFRFCKRVSMLLPTSF*
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spliced messenger RNA

>Ggra9834.t1 ID=Ggra9834.t1|Name=Ggra9834.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=672bp|location=Sequence derived from alignment at tig00000160_pilon:227996..228743+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTTCTACGACATCATCTTCCGAAGGAATCCGCGTTACTCCTACGA
CGAGGACGCCGAGCCCTTGTCCGGAATTCTCCGTGGACCAGGTCCAAATG
ATCGTCGCCGACCACCAAAGCCGTCACGACGTCGTGTGAGCTTCGCCTTC
GAGGACGCATCCCAAAAGTCGCCCTCGTCTCGTCGAACTCGCTCAGACCT
TTCAGAAGAGTCCAGCTACCACTCTCGCCCGCACAGACAGAGATCAGACA
GCTTTGATAGCAGAGATCGCGTGTTCCAGGTGTTTGACGATCGAATCCCC
GAATCTAGCTCACAGACGTCATCATCAGTATCGAGTCGTCATCGCCGAGA
TGTGACGCTTCGCCTAGCCGCTATCGAAGCAGTTCGTCCCCTCGCCGATA
CGAAAAGAGCCAGAGACGGCACGAGAAGACCTCAGACCATAACCGAGACC
GTCGTCACCACAAGCATTCATCAAGACACCATCGGAAGCATCGTGATGAT
GACTACGAAGAGCGTCACCACCGGTATCAATATGATGAAGAGCGTAGTGA
ACGTGAAAAACGTCGTTCGAGGCGCCACTCCTCCGGAAAGCGCGGAGGCA
GGTCAAGGCATCACCGAAAAGGGTTTTCGTTTTTGTAAGAGGGTGTCTAT
GCTTCTCCCAACTAGCTTCTAG
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protein sequence of Ggra9834.t1

>Ggra9834.t1 ID=Ggra9834.t1|Name=Ggra9834.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=224bp
MAFYDIIFRRNPRYSYDEDAEPLSGILRGPGPNDRRRPPKPSRRRVSFAF
EDASQKSPSSRRTRSDLSEESSYHSRPHRQRSDSFDSRDRVFQVFDDRIP
ESSSQTSSSVSSRHRRDVTLRLAAIEAVRPLADTKRARDGTRRPQTITET
VVTTSIHQDTIGSIVMMTTKSVTTGINMMKSVVNVKNVVRGATPPESAEA
GQGITEKGFRFCKRVSMLLPTSF*
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mRNA from alignment at tig00000160_pilon:227996..228743+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9834.t1 ID=Ggra9834.t1|Name=Ggra9834.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=748bp|location=Sequence derived from alignment at tig00000160_pilon:227996..228743+ (Gracilaria gracilis GNS1m male)
ATGGCTTTCTACGACATCATCTTCCGAAGGAATCCGCGTTACTCCTACGA
CGAGGACGCCGAGCCCTTGTCCGGAATTCTCCGTGGACCAGGTCCAAATG
ATCGTCGCCGACCACCAAAGCCGTCACGACGTCGTGTGAGCTTCGCCTTC
GAGGACGCATCCCAAAAGTCGCCCTCGTCTCGTCGAACTCGCTCAGACCT
TTCAGAAGAGTCCAGCTACCACTCTCGCCCGCACAGACAGAGATCAGACA
GCTTTGATAGCAGAGATCGCGTGTTCCAGGTGTTTGACGATCGAATCCCC
GAATCTAGCTCACAGACGTCATCATCAGTATCGAGTCGTCATCGCCGAGA
TGTGAGTCCGTCGGGGCGTGGTTACAATCGGCCTCACCATGCCTCCAAAT
CTCAACGTCGTCACTCTAGGCGTGACCGTAGCGCTTCGCCTAGCCGCTAT
CGAAGCAGTTCGTCCCCTCGCCGATACGAAAAGAGCCAGAGACGGCACGA
GAAGACCTCAGACCATAACCGAGACCGTCGTCACCACAAGCATTCATCAA
GACACCATCGGAAGCATCGTGATGATGACTACGAAGAGCGTCACCACCGG
TATCAATATGATGAAGAGCGTAGTGAACGTGAAAAACGTCGTTCGAGGCG
CCACTCCTCCGGAAAGCGCGGAGGCAGGTCAAGGCATCACCGAAAAGGGT
TTTCGTTTTTGTAAGAGGGTGTCTATGCTTCTCCCAACTAGCTTCTAG
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Coding sequence (CDS) from alignment at tig00000160_pilon:227996..228743+

>Ggra9834.t1 ID=Ggra9834.t1|Name=Ggra9834.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=672bp|location=Sequence derived from alignment at tig00000160_pilon:227996..228743+ (Gracilaria gracilis GNS1m male)
ATGGCTTTCTACGACATCATCTTCCGAAGGAATCCGCGTTACTCCTACGA
CGAGGACGCCGAGCCCTTGTCCGGAATTCTCCGTGGACCAGGTCCAAATG
ATCGTCGCCGACCACCAAAGCCGTCACGACGTCGTGTGAGCTTCGCCTTC
GAGGACGCATCCCAAAAGTCGCCCTCGTCTCGTCGAACTCGCTCAGACCT
TTCAGAAGAGTCCAGCTACCACTCTCGCCCGCACAGACAGAGATCAGACA
GCTTTGATAGCAGAGATCGCGTGTTCCAGGTGTTTGACGATCGAATCCCC
GAATCTAGCTCACAGACGTCATCATCAGTATCGAGTCGTCATCGCCGAGA
TGTGACGCTTCGCCTAGCCGCTATCGAAGCAGTTCGTCCCCTCGCCGATA
CGAAAAGAGCCAGAGACGGCACGAGAAGACCTCAGACCATAACCGAGACC
GTCGTCACCACAAGCATTCATCAAGACACCATCGGAAGCATCGTGATGAT
GACTACGAAGAGCGTCACCACCGGTATCAATATGATGAAGAGCGTAGTGA
ACGTGAAAAACGTCGTTCGAGGCGCCACTCCTCCGGAAAGCGCGGAGGCA
GGTCAAGGCATCACCGAAAAGGGTTTTCGTTTTTGTAAGAGGGTGTCTAT
GCTTCTCCCAACTAGCTTCTAG
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