Ggra9833.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9833.t1
Unique NameGgra9833.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length377
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000160_piloncontigtig00000160_pilon:225117..226247 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1423144.Gal_01393
PFAMsLactamase_B
Max annot lvl2|Bacteria
Evalue8.33e-17
EggNOG OGsCOG0491@1|root,COG0491@2|Bacteria
DescriptionThiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
COG categoryGM
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9833Ggra9833Gracilaria gracilis GNS1m malegenetig00000160_pilon 225117..226247 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9833.t1.stop1Ggra9833.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000160_pilon 225117..225119 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9833.t1.CDS1Ggra9833.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000160_pilon 225117..226247 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9833.t1.exon1Ggra9833.t1.exon1Gracilaria gracilis GNS1m maleexontig00000160_pilon 225117..226247 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9833.t1.start1Ggra9833.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000160_pilon 226245..226247 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9833.t1Ggra9833.t1Gracilaria gracilis GNS1m malepolypeptidetig00000160_pilon 225117..226247 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9833.t1 ID=Ggra9833.t1|Name=Ggra9833.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=377bp
MITQLLLFSSLPLFLAFPISTRSSQPDCKPAVDCISLLEDGSTCSLFPNP
NRPTPINSQGFNLTEIRKGVFSYSDGVYFSMILYASRKLVMIDFPDIFSS
VAPDGSYRLLSAVQMVVNDSVPKQIIMVYSHFHVDHIGRAADVKNFLSDK
YPSTPLQIVGSRDTFKFLQRNRDDIPLPDVFVTRWKPIKIFLSRTLSLKL
FVLGGHTKEDIVGYISPSPDGVGIVNLVDIINPKEAPLPQFTIAMNFESF
ISAQQNLLQLDFDIINPGHGVIGTKRDVVNNLNYSKFVLQAVRESAQELD
PSIQASTLQKFFNPEAFEYFNNPWAFGQLIGAQAEACFRKVISEWGCVLT
GVDVVARDHCMLVALYDFSSTFDFTH*
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spliced messenger RNA

>Ggra9833.t1 ID=Ggra9833.t1|Name=Ggra9833.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1131bp|location=Sequence derived from alignment at tig00000160_pilon:225117..226247- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCACCCAGCTTCTACTCTTTTCCTCGCTGCCACTCTTCCTCGCTTT
TCCGATTTCTACCAGGTCCTCACAGCCAGATTGTAAGCCTGCTGTCGATT
GTATCTCCCTCCTGGAAGATGGGTCGACCTGCTCGTTGTTCCCGAACCCC
AATCGTCCGACACCAATCAATTCGCAAGGGTTCAACCTCACAGAAATTCG
GAAGGGCGTCTTTTCTTATTCAGACGGTGTCTACTTCTCAATGATTTTGT
ACGCAAGTCGAAAACTGGTTATGATCGACTTTCCTGATATCTTCAGTTCC
GTTGCACCCGACGGAAGTTACAGACTTCTTTCAGCCGTTCAGATGGTTGT
AAATGACTCTGTTCCGAAGCAAATAATTATGGTGTACTCCCATTTCCATG
TCGATCATATTGGTCGTGCCGCAGACGTGAAGAACTTTCTCTCCGATAAA
TACCCTTCTACTCCTCTTCAAATCGTGGGCTCTCGGGATACTTTCAAATT
CTTGCAACGAAATCGTGATGATATACCTCTGCCAGACGTATTCGTCACAC
GCTGGAAACCAATCAAGATCTTTCTCTCTCGCACTTTGTCGCTCAAGTTG
TTCGTTCTTGGAGGGCATACCAAGGAGGATATAGTTGGATACATTAGTCC
GTCTCCAGATGGTGTTGGTATTGTGAACTTGGTGGATATAATCAATCCTA
AAGAGGCACCACTGCCACAGTTCACAATTGCGATGAATTTCGAATCATTC
ATATCGGCTCAGCAAAATTTACTTCAGCTGGACTTTGACATCATCAACCC
AGGGCATGGCGTGATTGGAACAAAACGGGACGTTGTCAACAATCTCAACT
ATTCGAAGTTTGTGCTCCAAGCAGTTCGAGAGAGTGCACAGGAGCTTGAT
CCTTCCATACAAGCGTCAACGTTGCAGAAGTTTTTCAACCCAGAAGCCTT
TGAATACTTTAATAATCCGTGGGCATTTGGGCAGCTAATTGGAGCCCAGG
CGGAAGCTTGTTTCAGGAAAGTGATTTCCGAATGGGGTTGTGTTCTCACT
GGAGTGGATGTGGTGGCCAGAGACCATTGTATGCTCGTGGCATTATACGA
CTTCTCGTCTACATTCGACTTCACTCATTAA
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protein sequence of Ggra9833.t1

>Ggra9833.t1 ID=Ggra9833.t1|Name=Ggra9833.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=377bp
MITQLLLFSSLPLFLAFPISTRSSQPDCKPAVDCISLLEDGSTCSLFPNP
NRPTPINSQGFNLTEIRKGVFSYSDGVYFSMILYASRKLVMIDFPDIFSS
VAPDGSYRLLSAVQMVVNDSVPKQIIMVYSHFHVDHIGRAADVKNFLSDK
YPSTPLQIVGSRDTFKFLQRNRDDIPLPDVFVTRWKPIKIFLSRTLSLKL
FVLGGHTKEDIVGYISPSPDGVGIVNLVDIINPKEAPLPQFTIAMNFESF
ISAQQNLLQLDFDIINPGHGVIGTKRDVVNNLNYSKFVLQAVRESAQELD
PSIQASTLQKFFNPEAFEYFNNPWAFGQLIGAQAEACFRKVISEWGCVLT
GVDVVARDHCMLVALYDFSSTFDFTH*
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mRNA from alignment at tig00000160_pilon:225117..226247-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9833.t1 ID=Ggra9833.t1|Name=Ggra9833.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1131bp|location=Sequence derived from alignment at tig00000160_pilon:225117..226247- (Gracilaria gracilis GNS1m male)
ATGATCACCCAGCTTCTACTCTTTTCCTCGCTGCCACTCTTCCTCGCTTT
TCCGATTTCTACCAGGTCCTCACAGCCAGATTGTAAGCCTGCTGTCGATT
GTATCTCCCTCCTGGAAGATGGGTCGACCTGCTCGTTGTTCCCGAACCCC
AATCGTCCGACACCAATCAATTCGCAAGGGTTCAACCTCACAGAAATTCG
GAAGGGCGTCTTTTCTTATTCAGACGGTGTCTACTTCTCAATGATTTTGT
ACGCAAGTCGAAAACTGGTTATGATCGACTTTCCTGATATCTTCAGTTCC
GTTGCACCCGACGGAAGTTACAGACTTCTTTCAGCCGTTCAGATGGTTGT
AAATGACTCTGTTCCGAAGCAAATAATTATGGTGTACTCCCATTTCCATG
TCGATCATATTGGTCGTGCCGCAGACGTGAAGAACTTTCTCTCCGATAAA
TACCCTTCTACTCCTCTTCAAATCGTGGGCTCTCGGGATACTTTCAAATT
CTTGCAACGAAATCGTGATGATATACCTCTGCCAGACGTATTCGTCACAC
GCTGGAAACCAATCAAGATCTTTCTCTCTCGCACTTTGTCGCTCAAGTTG
TTCGTTCTTGGAGGGCATACCAAGGAGGATATAGTTGGATACATTAGTCC
GTCTCCAGATGGTGTTGGTATTGTGAACTTGGTGGATATAATCAATCCTA
AAGAGGCACCACTGCCACAGTTCACAATTGCGATGAATTTCGAATCATTC
ATATCGGCTCAGCAAAATTTACTTCAGCTGGACTTTGACATCATCAACCC
AGGGCATGGCGTGATTGGAACAAAACGGGACGTTGTCAACAATCTCAACT
ATTCGAAGTTTGTGCTCCAAGCAGTTCGAGAGAGTGCACAGGAGCTTGAT
CCTTCCATACAAGCGTCAACGTTGCAGAAGTTTTTCAACCCAGAAGCCTT
TGAATACTTTAATAATCCGTGGGCATTTGGGCAGCTAATTGGAGCCCAGG
CGGAAGCTTGTTTCAGGAAAGTGATTTCCGAATGGGGTTGTGTTCTCACT
GGAGTGGATGTGGTGGCCAGAGACCATTGTATGCTCGTGGCATTATACGA
CTTCTCGTCTACATTCGACTTCACTCATTAA
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Coding sequence (CDS) from alignment at tig00000160_pilon:225117..226247-

>Ggra9833.t1 ID=Ggra9833.t1|Name=Ggra9833.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1131bp|location=Sequence derived from alignment at tig00000160_pilon:225117..226247- (Gracilaria gracilis GNS1m male)
ATGATCACCCAGCTTCTACTCTTTTCCTCGCTGCCACTCTTCCTCGCTTT
TCCGATTTCTACCAGGTCCTCACAGCCAGATTGTAAGCCTGCTGTCGATT
GTATCTCCCTCCTGGAAGATGGGTCGACCTGCTCGTTGTTCCCGAACCCC
AATCGTCCGACACCAATCAATTCGCAAGGGTTCAACCTCACAGAAATTCG
GAAGGGCGTCTTTTCTTATTCAGACGGTGTCTACTTCTCAATGATTTTGT
ACGCAAGTCGAAAACTGGTTATGATCGACTTTCCTGATATCTTCAGTTCC
GTTGCACCCGACGGAAGTTACAGACTTCTTTCAGCCGTTCAGATGGTTGT
AAATGACTCTGTTCCGAAGCAAATAATTATGGTGTACTCCCATTTCCATG
TCGATCATATTGGTCGTGCCGCAGACGTGAAGAACTTTCTCTCCGATAAA
TACCCTTCTACTCCTCTTCAAATCGTGGGCTCTCGGGATACTTTCAAATT
CTTGCAACGAAATCGTGATGATATACCTCTGCCAGACGTATTCGTCACAC
GCTGGAAACCAATCAAGATCTTTCTCTCTCGCACTTTGTCGCTCAAGTTG
TTCGTTCTTGGAGGGCATACCAAGGAGGATATAGTTGGATACATTAGTCC
GTCTCCAGATGGTGTTGGTATTGTGAACTTGGTGGATATAATCAATCCTA
AAGAGGCACCACTGCCACAGTTCACAATTGCGATGAATTTCGAATCATTC
ATATCGGCTCAGCAAAATTTACTTCAGCTGGACTTTGACATCATCAACCC
AGGGCATGGCGTGATTGGAACAAAACGGGACGTTGTCAACAATCTCAACT
ATTCGAAGTTTGTGCTCCAAGCAGTTCGAGAGAGTGCACAGGAGCTTGAT
CCTTCCATACAAGCGTCAACGTTGCAGAAGTTTTTCAACCCAGAAGCCTT
TGAATACTTTAATAATCCGTGGGCATTTGGGCAGCTAATTGGAGCCCAGG
CGGAAGCTTGTTTCAGGAAAGTGATTTCCGAATGGGGTTGTGTTCTCACT
GGAGTGGATGTGGTGGCCAGAGACCATTGTATGCTCGTGGCATTATACGA
CTTCTCGTCTACATTCGACTTCACTCATTAA
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