Ggra9831.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9831.t1
Unique NameGgra9831.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length253
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000160_piloncontigtig00000160_pilon:153461..154319 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9831Ggra9831Gracilaria gracilis GNS1m malegenetig00000160_pilon 153461..154319 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9831.t1Ggra9831.t1Gracilaria gracilis GNS1m malepolypeptidetig00000160_pilon 153461..154319 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9831.t1.start1Ggra9831.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000160_pilon 153461..153463 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9831.t1.CDS1Ggra9831.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000160_pilon 153461..153665 +
Ggra9831.t1.CDS2Ggra9831.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000160_pilon 153766..154319 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9831.t1.exon1Ggra9831.t1.exon1Gracilaria gracilis GNS1m maleexontig00000160_pilon 153461..153665 +
Ggra9831.t1.exon2Ggra9831.t1.exon2Gracilaria gracilis GNS1m maleexontig00000160_pilon 153766..154319 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9831.t1.intron1Ggra9831.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000160_pilon 153666..153765 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9831.t1.stop1Ggra9831.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000160_pilon 154317..154319 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9831.t1 ID=Ggra9831.t1|Name=Ggra9831.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=253bp
MPPSNRRPRLTENSAAVKRLKAMFDTGELLGSETAFEVYNRDPIFKPFRF
ETFRKKFHKIRNEKNESSNVTPEVDGDDCEANGKDTPGDEGNLRVEEGQL
YPLVLISEWEDAVSTNKRLTLAVNLPSGTDMEHISSCVINDGMDFQITIS
GPDRMINVVLMHKLWLSKKFESMENYHPKIGGFQKALKCPRPSAKDKVTS
FCNIRLPFSVEYYVLGKYILTFPDRTKVFYVYLKAPDDDYYRKEEISCVE
VS*
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spliced messenger RNA

>Ggra9831.t1 ID=Ggra9831.t1|Name=Ggra9831.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=759bp|location=Sequence derived from alignment at tig00000160_pilon:153461..154319+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTCCTTCAAACCGCCGTCCCCGCCTTACCGAAAACTCCGCCGCAGT
TAAACGCCTTAAGGCTATGTTCGACACTGGCGAGCTACTTGGTAGCGAAA
CCGCATTTGAAGTGTACAACCGAGATCCGATTTTCAAACCGTTTCGTTTT
GAAACTTTTAGAAAAAAGTTCCATAAGATTCGTAATGAAAAAAATGAATC
ATCAAACGTCACCCCCGAGGTAGATGGTGATGATTGCGAAGCAAATGGAA
AGGATACGCCGGGTGACGAAGGCAATTTACGTGTTGAAGAAGGACAACTC
TATCCACTTGTGTTGATATCGGAATGGGAAGACGCTGTTTCAACTAATAA
GCGTTTGACACTAGCCGTCAATCTACCATCTGGTACAGATATGGAGCATA
TCAGTAGTTGTGTGATCAATGATGGTATGGACTTTCAGATTACAATATCC
GGGCCTGATCGGATGATCAATGTGGTATTAATGCACAAATTGTGGCTTTC
GAAAAAGTTTGAGTCTATGGAGAATTATCACCCTAAGATTGGTGGGTTTC
AGAAAGCATTGAAATGCCCACGGCCATCTGCAAAGGATAAGGTTACATCG
TTCTGTAACATCCGATTGCCGTTCAGTGTGGAATATTATGTTCTCGGGAA
GTACATATTGACATTCCCAGACCGAACTAAAGTCTTCTATGTATACCTTA
AAGCTCCGGATGATGACTATTACAGAAAAGAGGAGATTTCTTGTGTTGAA
GTAAGTTAA
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protein sequence of Ggra9831.t1

>Ggra9831.t1 ID=Ggra9831.t1|Name=Ggra9831.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=253bp
MPPSNRRPRLTENSAAVKRLKAMFDTGELLGSETAFEVYNRDPIFKPFRF
ETFRKKFHKIRNEKNESSNVTPEVDGDDCEANGKDTPGDEGNLRVEEGQL
YPLVLISEWEDAVSTNKRLTLAVNLPSGTDMEHISSCVINDGMDFQITIS
GPDRMINVVLMHKLWLSKKFESMENYHPKIGGFQKALKCPRPSAKDKVTS
FCNIRLPFSVEYYVLGKYILTFPDRTKVFYVYLKAPDDDYYRKEEISCVE
VS*
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mRNA from alignment at tig00000160_pilon:153461..154319+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9831.t1 ID=Ggra9831.t1|Name=Ggra9831.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=859bp|location=Sequence derived from alignment at tig00000160_pilon:153461..154319+ (Gracilaria gracilis GNS1m male)
ATGCCTCCTTCAAACCGCCGTCCCCGCCTTACCGAAAACTCCGCCGCAGT
TAAACGCCTTAAGGCTATGTTCGACACTGGCGAGCTACTTGGTAGCGAAA
CCGCATTTGAAGTGTACAACCGAGATCCGATTTTCAAACCGTTTCGTTTT
GAAACTTTTAGAAAAAAGTTCCATAAGATTCGTAATGAAAAAAATGAATC
ATCAAGTAAGTTACAATTTGTTTCGTTGAAGAATATAAAGAAGGTTGAGA
ATTAACAGAAAAGATTTAGATTTACTCAACCCGCAAACATCCGAGCATAA
CCCAGACGTCACCCCCGAGGTAGATGGTGATGATTGCGAAGCAAATGGAA
AGGATACGCCGGGTGACGAAGGCAATTTACGTGTTGAAGAAGGACAACTC
TATCCACTTGTGTTGATATCGGAATGGGAAGACGCTGTTTCAACTAATAA
GCGTTTGACACTAGCCGTCAATCTACCATCTGGTACAGATATGGAGCATA
TCAGTAGTTGTGTGATCAATGATGGTATGGACTTTCAGATTACAATATCC
GGGCCTGATCGGATGATCAATGTGGTATTAATGCACAAATTGTGGCTTTC
GAAAAAGTTTGAGTCTATGGAGAATTATCACCCTAAGATTGGTGGGTTTC
AGAAAGCATTGAAATGCCCACGGCCATCTGCAAAGGATAAGGTTACATCG
TTCTGTAACATCCGATTGCCGTTCAGTGTGGAATATTATGTTCTCGGGAA
GTACATATTGACATTCCCAGACCGAACTAAAGTCTTCTATGTATACCTTA
AAGCTCCGGATGATGACTATTACAGAAAAGAGGAGATTTCTTGTGTTGAA
GTAAGTTAA
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Coding sequence (CDS) from alignment at tig00000160_pilon:153461..154319+

>Ggra9831.t1 ID=Ggra9831.t1|Name=Ggra9831.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=759bp|location=Sequence derived from alignment at tig00000160_pilon:153461..154319+ (Gracilaria gracilis GNS1m male)
ATGCCTCCTTCAAACCGCCGTCCCCGCCTTACCGAAAACTCCGCCGCAGT
TAAACGCCTTAAGGCTATGTTCGACACTGGCGAGCTACTTGGTAGCGAAA
CCGCATTTGAAGTGTACAACCGAGATCCGATTTTCAAACCGTTTCGTTTT
GAAACTTTTAGAAAAAAGTTCCATAAGATTCGTAATGAAAAAAATGAATC
ATCAAACGTCACCCCCGAGGTAGATGGTGATGATTGCGAAGCAAATGGAA
AGGATACGCCGGGTGACGAAGGCAATTTACGTGTTGAAGAAGGACAACTC
TATCCACTTGTGTTGATATCGGAATGGGAAGACGCTGTTTCAACTAATAA
GCGTTTGACACTAGCCGTCAATCTACCATCTGGTACAGATATGGAGCATA
TCAGTAGTTGTGTGATCAATGATGGTATGGACTTTCAGATTACAATATCC
GGGCCTGATCGGATGATCAATGTGGTATTAATGCACAAATTGTGGCTTTC
GAAAAAGTTTGAGTCTATGGAGAATTATCACCCTAAGATTGGTGGGTTTC
AGAAAGCATTGAAATGCCCACGGCCATCTGCAAAGGATAAGGTTACATCG
TTCTGTAACATCCGATTGCCGTTCAGTGTGGAATATTATGTTCTCGGGAA
GTACATATTGACATTCCCAGACCGAACTAAAGTCTTCTATGTATACCTTA
AAGCTCCGGATGATGACTATTACAGAAAAGAGGAGATTTCTTGTGTTGAA
GTAAGTTAA
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