Ggra9829.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9829.t1
Unique Name	Ggra9829.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	596

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000160_pilon	contig	tig00000160_pilon:119063..120850 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9829	Ggra9829	Gracilaria gracilis GNS1m male	gene	tig00000160_pilon 119063..120850 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9829.t1.stop1	Ggra9829.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000160_pilon 119063..119065 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9829.t1.CDS1	Ggra9829.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000160_pilon 119063..120850 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9829.t1.exon1	Ggra9829.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000160_pilon 119063..120850 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9829.t1.start1	Ggra9829.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000160_pilon 120848..120850 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9829.t1	Ggra9829.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000160_pilon 119063..120850 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000160_pilon:119063..120850-
coding sequence from alignment at tig00000160_pilon:119063..120850-

mRNA sequence

>Ggra9829.t1 ID=Ggra9829.t1|Name=Ggra9829.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=596bp
MPQPAAVSVAKRIHVLERDIKLDNFNSGDALVELATLLLYNEHVTQDVPR
ALQLLERSIAQYDISEAFYHLISYFRAHGNRAQKRRVIPLLEVSVYRFPD
PDFVYLLGCVLYSGDTGEMDVQRGVQLLERAVRMDQNPQHMETLASILLR
DASVGGDKKRALRMYKQAVRLSNNAWRMLRLADFYAYGTFSLKPCMRCAK
KWYERAIEEGNLPKAKMGLANVLTNAVHQQHQDSVRAHNLLEEVLSQAPS
KEILLQLGNFYSEDKHLSNYPRSKEMYQRAMDEFDCRTSMMFLLGLYILG
HTDVPPDHYAALQFCTLQYERTKDSAVLYMLVSLLWSGSEQVPPDRGRAY
QLCKDERNDTHAVQASLLRYGAEGVMEADSKLARTICDGKISVNARLTYA
IILSESSSRRDLKRAEQMLRRIVNEGDTFYAWMPLTLRRGTYELPVGGDP
TRLLRCMKRVTNCSSLAALNLASLLLEKADGRDDCIHFIRYLVNETKEVL
VASLNLAYLFLEGLATTLKDPKRAVAVLEDALEENSDMSARAMLAGALVA
CGEDWERSVALWKGVKEECADDEEEFVKIRQLISDETLRRLEDET*

spliced messenger RNA

>Ggra9829.t1 ID=Ggra9829.t1|Name=Ggra9829.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1788bp|location=Sequence derived from alignment at tig00000160_pilon:119063..120850- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCAGCCAGCCGCCGTCTCCGTCGCCAAACGTATACACGTCCTCGA
ACGCGACATAAAGCTCGACAACTTCAACAGCGGAGACGCCCTCGTCGAAC
TAGCTACTCTCTTGTTATACAACGAGCACGTGACCCAGGATGTGCCGCGA
GCACTTCAACTGCTCGAACGTTCTATAGCTCAGTATGACATCTCCGAGGC
GTTTTACCACCTCATCAGTTACTTCCGGGCGCATGGGAATCGCGCCCAGA
AACGGCGTGTGATTCCTTTGTTGGAAGTGTCCGTCTACCGTTTCCCTGAT
CCTGACTTTGTTTATTTGCTGGGTTGCGTGCTCTATTCAGGGGATACAGG
AGAGATGGATGTTCAACGAGGAGTTCAGTTGCTTGAACGTGCCGTGAGGA
TGGATCAGAACCCTCAGCATATGGAGACTTTGGCGTCTATTTTGCTTCGC
GATGCTAGTGTAGGGGGCGACAAGAAACGCGCTCTACGAATGTACAAACA
AGCGGTGCGACTCTCCAACAATGCCTGGCGTATGTTGCGACTGGCAGACT
TTTACGCATACGGAACCTTCAGCTTGAAACCGTGCATGAGATGTGCAAAG
AAGTGGTACGAACGCGCGATAGAAGAGGGCAACTTACCCAAAGCAAAAAT
GGGGCTGGCAAACGTCCTCACCAATGCCGTCCACCAGCAGCATCAAGACT
CGGTCCGAGCCCATAATCTTCTCGAGGAAGTACTGTCACAAGCCCCGAGT
AAAGAAATTCTCTTGCAACTAGGTAACTTTTACTCTGAAGACAAACATCT
GTCAAACTACCCTCGATCAAAGGAGATGTATCAACGGGCGATGGATGAAT
TTGATTGCCGAACATCTATGATGTTCCTTCTAGGCCTGTACATACTCGGG
CACACAGATGTACCGCCAGACCACTACGCGGCGCTGCAATTTTGTACGTT
GCAATACGAGCGAACAAAAGACTCAGCCGTGTTGTATATGCTGGTGAGTC
TGTTGTGGAGTGGAAGTGAACAGGTGCCACCGGACCGTGGTCGAGCCTAC
CAGTTGTGCAAGGACGAGCGAAACGATACTCATGCAGTACAAGCTTCTTT
GCTTCGATACGGAGCTGAGGGTGTGATGGAAGCCGATTCCAAGCTCGCCA
GAACCATCTGTGACGGGAAAATCTCGGTGAACGCCAGATTGACGTACGCG
ATCATCCTGAGTGAGTCTAGCTCGCGACGTGATTTGAAACGCGCCGAACA
GATGTTGCGTAGAATTGTGAACGAAGGGGACACCTTTTACGCATGGATGC
CGCTTACGTTGCGGAGAGGCACGTACGAATTGCCAGTGGGTGGTGATCCT
ACGCGCCTGCTACGCTGTATGAAGCGAGTGACGAATTGCTCGAGCTTGGC
AGCGTTAAATTTGGCATCGCTATTGTTGGAGAAAGCTGATGGGAGGGACG
ACTGCATCCACTTCATTAGGTATTTGGTGAATGAAACGAAGGAGGTACTA
GTGGCCAGTTTGAATCTTGCGTACTTGTTTCTGGAAGGCTTGGCGACCAC
GCTTAAGGATCCAAAACGTGCGGTTGCGGTTCTCGAAGATGCACTTGAAG
AGAATAGTGATATGAGTGCACGAGCTATGCTCGCTGGGGCCTTGGTGGCA
TGTGGAGAAGATTGGGAGAGGAGTGTAGCGCTCTGGAAAGGTGTTAAAGA
GGAATGTGCTGACGATGAGGAGGAGTTTGTCAAGATACGACAACTGATAT
CGGATGAAACACTGAGAAGGTTGGAGGATGAAACTTGA

protein sequence of Ggra9829.t1

>Ggra9829.t1 ID=Ggra9829.t1|Name=Ggra9829.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=596bp
MPQPAAVSVAKRIHVLERDIKLDNFNSGDALVELATLLLYNEHVTQDVPR
ALQLLERSIAQYDISEAFYHLISYFRAHGNRAQKRRVIPLLEVSVYRFPD
PDFVYLLGCVLYSGDTGEMDVQRGVQLLERAVRMDQNPQHMETLASILLR
DASVGGDKKRALRMYKQAVRLSNNAWRMLRLADFYAYGTFSLKPCMRCAK
KWYERAIEEGNLPKAKMGLANVLTNAVHQQHQDSVRAHNLLEEVLSQAPS
KEILLQLGNFYSEDKHLSNYPRSKEMYQRAMDEFDCRTSMMFLLGLYILG
HTDVPPDHYAALQFCTLQYERTKDSAVLYMLVSLLWSGSEQVPPDRGRAY
QLCKDERNDTHAVQASLLRYGAEGVMEADSKLARTICDGKISVNARLTYA
IILSESSSRRDLKRAEQMLRRIVNEGDTFYAWMPLTLRRGTYELPVGGDP
TRLLRCMKRVTNCSSLAALNLASLLLEKADGRDDCIHFIRYLVNETKEVL
VASLNLAYLFLEGLATTLKDPKRAVAVLEDALEENSDMSARAMLAGALVA
CGEDWERSVALWKGVKEECADDEEEFVKIRQLISDETLRRLEDET*

mRNA from alignment at tig00000160_pilon:119063..120850-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9829.t1 ID=Ggra9829.t1|Name=Ggra9829.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1788bp|location=Sequence derived from alignment at tig00000160_pilon:119063..120850- (Gracilaria gracilis GNS1m male)
ATGCCGCAGCCAGCCGCCGTCTCCGTCGCCAAACGTATACACGTCCTCGA
ACGCGACATAAAGCTCGACAACTTCAACAGCGGAGACGCCCTCGTCGAAC
TAGCTACTCTCTTGTTATACAACGAGCACGTGACCCAGGATGTGCCGCGA
GCACTTCAACTGCTCGAACGTTCTATAGCTCAGTATGACATCTCCGAGGC
GTTTTACCACCTCATCAGTTACTTCCGGGCGCATGGGAATCGCGCCCAGA
AACGGCGTGTGATTCCTTTGTTGGAAGTGTCCGTCTACCGTTTCCCTGAT
CCTGACTTTGTTTATTTGCTGGGTTGCGTGCTCTATTCAGGGGATACAGG
AGAGATGGATGTTCAACGAGGAGTTCAGTTGCTTGAACGTGCCGTGAGGA
TGGATCAGAACCCTCAGCATATGGAGACTTTGGCGTCTATTTTGCTTCGC
GATGCTAGTGTAGGGGGCGACAAGAAACGCGCTCTACGAATGTACAAACA
AGCGGTGCGACTCTCCAACAATGCCTGGCGTATGTTGCGACTGGCAGACT
TTTACGCATACGGAACCTTCAGCTTGAAACCGTGCATGAGATGTGCAAAG
AAGTGGTACGAACGCGCGATAGAAGAGGGCAACTTACCCAAAGCAAAAAT
GGGGCTGGCAAACGTCCTCACCAATGCCGTCCACCAGCAGCATCAAGACT
CGGTCCGAGCCCATAATCTTCTCGAGGAAGTACTGTCACAAGCCCCGAGT
AAAGAAATTCTCTTGCAACTAGGTAACTTTTACTCTGAAGACAAACATCT
GTCAAACTACCCTCGATCAAAGGAGATGTATCAACGGGCGATGGATGAAT
TTGATTGCCGAACATCTATGATGTTCCTTCTAGGCCTGTACATACTCGGG
CACACAGATGTACCGCCAGACCACTACGCGGCGCTGCAATTTTGTACGTT
GCAATACGAGCGAACAAAAGACTCAGCCGTGTTGTATATGCTGGTGAGTC
TGTTGTGGAGTGGAAGTGAACAGGTGCCACCGGACCGTGGTCGAGCCTAC
CAGTTGTGCAAGGACGAGCGAAACGATACTCATGCAGTACAAGCTTCTTT
GCTTCGATACGGAGCTGAGGGTGTGATGGAAGCCGATTCCAAGCTCGCCA
GAACCATCTGTGACGGGAAAATCTCGGTGAACGCCAGATTGACGTACGCG
ATCATCCTGAGTGAGTCTAGCTCGCGACGTGATTTGAAACGCGCCGAACA
GATGTTGCGTAGAATTGTGAACGAAGGGGACACCTTTTACGCATGGATGC
CGCTTACGTTGCGGAGAGGCACGTACGAATTGCCAGTGGGTGGTGATCCT
ACGCGCCTGCTACGCTGTATGAAGCGAGTGACGAATTGCTCGAGCTTGGC
AGCGTTAAATTTGGCATCGCTATTGTTGGAGAAAGCTGATGGGAGGGACG
ACTGCATCCACTTCATTAGGTATTTGGTGAATGAAACGAAGGAGGTACTA
GTGGCCAGTTTGAATCTTGCGTACTTGTTTCTGGAAGGCTTGGCGACCAC
GCTTAAGGATCCAAAACGTGCGGTTGCGGTTCTCGAAGATGCACTTGAAG
AGAATAGTGATATGAGTGCACGAGCTATGCTCGCTGGGGCCTTGGTGGCA
TGTGGAGAAGATTGGGAGAGGAGTGTAGCGCTCTGGAAAGGTGTTAAAGA
GGAATGTGCTGACGATGAGGAGGAGTTTGTCAAGATACGACAACTGATAT
CGGATGAAACACTGAGAAGGTTGGAGGATGAAACTTGA

Coding sequence (CDS) from alignment at tig00000160_pilon:119063..120850-

>Ggra9829.t1 ID=Ggra9829.t1|Name=Ggra9829.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1788bp|location=Sequence derived from alignment at tig00000160_pilon:119063..120850- (Gracilaria gracilis GNS1m male)
ATGCCGCAGCCAGCCGCCGTCTCCGTCGCCAAACGTATACACGTCCTCGA
ACGCGACATAAAGCTCGACAACTTCAACAGCGGAGACGCCCTCGTCGAAC
TAGCTACTCTCTTGTTATACAACGAGCACGTGACCCAGGATGTGCCGCGA
GCACTTCAACTGCTCGAACGTTCTATAGCTCAGTATGACATCTCCGAGGC
GTTTTACCACCTCATCAGTTACTTCCGGGCGCATGGGAATCGCGCCCAGA
AACGGCGTGTGATTCCTTTGTTGGAAGTGTCCGTCTACCGTTTCCCTGAT
CCTGACTTTGTTTATTTGCTGGGTTGCGTGCTCTATTCAGGGGATACAGG
AGAGATGGATGTTCAACGAGGAGTTCAGTTGCTTGAACGTGCCGTGAGGA
TGGATCAGAACCCTCAGCATATGGAGACTTTGGCGTCTATTTTGCTTCGC
GATGCTAGTGTAGGGGGCGACAAGAAACGCGCTCTACGAATGTACAAACA
AGCGGTGCGACTCTCCAACAATGCCTGGCGTATGTTGCGACTGGCAGACT
TTTACGCATACGGAACCTTCAGCTTGAAACCGTGCATGAGATGTGCAAAG
AAGTGGTACGAACGCGCGATAGAAGAGGGCAACTTACCCAAAGCAAAAAT
GGGGCTGGCAAACGTCCTCACCAATGCCGTCCACCAGCAGCATCAAGACT
CGGTCCGAGCCCATAATCTTCTCGAGGAAGTACTGTCACAAGCCCCGAGT
AAAGAAATTCTCTTGCAACTAGGTAACTTTTACTCTGAAGACAAACATCT
GTCAAACTACCCTCGATCAAAGGAGATGTATCAACGGGCGATGGATGAAT
TTGATTGCCGAACATCTATGATGTTCCTTCTAGGCCTGTACATACTCGGG
CACACAGATGTACCGCCAGACCACTACGCGGCGCTGCAATTTTGTACGTT
GCAATACGAGCGAACAAAAGACTCAGCCGTGTTGTATATGCTGGTGAGTC
TGTTGTGGAGTGGAAGTGAACAGGTGCCACCGGACCGTGGTCGAGCCTAC
CAGTTGTGCAAGGACGAGCGAAACGATACTCATGCAGTACAAGCTTCTTT
GCTTCGATACGGAGCTGAGGGTGTGATGGAAGCCGATTCCAAGCTCGCCA
GAACCATCTGTGACGGGAAAATCTCGGTGAACGCCAGATTGACGTACGCG
ATCATCCTGAGTGAGTCTAGCTCGCGACGTGATTTGAAACGCGCCGAACA
GATGTTGCGTAGAATTGTGAACGAAGGGGACACCTTTTACGCATGGATGC
CGCTTACGTTGCGGAGAGGCACGTACGAATTGCCAGTGGGTGGTGATCCT
ACGCGCCTGCTACGCTGTATGAAGCGAGTGACGAATTGCTCGAGCTTGGC
AGCGTTAAATTTGGCATCGCTATTGTTGGAGAAAGCTGATGGGAGGGACG
ACTGCATCCACTTCATTAGGTATTTGGTGAATGAAACGAAGGAGGTACTA
GTGGCCAGTTTGAATCTTGCGTACTTGTTTCTGGAAGGCTTGGCGACCAC
GCTTAAGGATCCAAAACGTGCGGTTGCGGTTCTCGAAGATGCACTTGAAG
AGAATAGTGATATGAGTGCACGAGCTATGCTCGCTGGGGCCTTGGTGGCA
TGTGGAGAAGATTGGGAGAGGAGTGTAGCGCTCTGGAAAGGTGTTAAAGA
GGAATGTGCTGACGATGAGGAGGAGTTTGTCAAGATACGACAACTGATAT
CGGATGAAACACTGAGAAGGTTGGAGGATGAAACTTGA