Ggra9828.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9828.t1
Unique NameGgra9828.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length191
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000160_piloncontigtig00000160_pilon:118423..118995 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9828Ggra9828Gracilaria gracilis GNS1m malegenetig00000160_pilon 118423..118995 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9828.t1.start1Ggra9828.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000160_pilon 118423..118425 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9828.t1.CDS1Ggra9828.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000160_pilon 118423..118995 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9828.t1.exon1Ggra9828.t1.exon1Gracilaria gracilis GNS1m maleexontig00000160_pilon 118423..118995 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9828.t1.stop1Ggra9828.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000160_pilon 118993..118995 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9828.t1Ggra9828.t1Gracilaria gracilis GNS1m malepolypeptidetig00000160_pilon 118423..118995 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9828.t1 ID=Ggra9828.t1|Name=Ggra9828.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=191bp
MMLADHLRHAIPALHTRSSKLVDMPQTFNRVMHFNLLRNKRHHLKHIYHI
QRADTEQHLYAIHKTPSGLKLVNVATNDTLFRAIINKEFKTVSILDEVND
KVLFTTRQHGALFAITDVFEGEAKDDVPYVQVCAGSDYSLTEVDGGRVLA
VVEREIRWAQLCHHSVYVDVGLNAPLYLLLIVTINHLADA*
back to top

spliced messenger RNA

>Ggra9828.t1 ID=Ggra9828.t1|Name=Ggra9828.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=573bp|location=Sequence derived from alignment at tig00000160_pilon:118423..118995+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGCTCGCCGATCATCTTCGACACGCTATTCCCGCCCTCCATACCCG
CTCCTCAAAGCTTGTGGACATGCCGCAGACCTTCAATCGCGTCATGCACT
TCAATCTGCTTCGAAATAAGCGCCACCATCTGAAACACATCTACCACATC
CAGCGCGCCGACACTGAACAACATCTGTATGCCATTCACAAAACTCCCAG
TGGCCTCAAACTTGTCAATGTCGCCACCAATGACACCCTCTTCCGCGCCA
TTATCAACAAGGAGTTCAAGACGGTCAGTATACTAGATGAGGTTAACGAC
AAAGTGCTGTTTACCACTCGACAACATGGCGCCTTGTTCGCTATCACCGA
TGTGTTTGAGGGTGAGGCCAAGGACGACGTCCCGTATGTGCAGGTTTGTG
CCGGTTCCGATTACAGCCTCACAGAAGTGGACGGCGGGCGCGTCCTGGCC
GTTGTGGAGAGGGAGATTCGCTGGGCCCAATTATGTCATCATTCGGTGTA
CGTAGATGTTGGACTGAATGCCCCGCTTTACCTTTTGTTAATTGTTACTA
TCAATCATCTCGCAGATGCTTGA
back to top

protein sequence of Ggra9828.t1

>Ggra9828.t1 ID=Ggra9828.t1|Name=Ggra9828.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=191bp
MMLADHLRHAIPALHTRSSKLVDMPQTFNRVMHFNLLRNKRHHLKHIYHI
QRADTEQHLYAIHKTPSGLKLVNVATNDTLFRAIINKEFKTVSILDEVND
KVLFTTRQHGALFAITDVFEGEAKDDVPYVQVCAGSDYSLTEVDGGRVLA
VVEREIRWAQLCHHSVYVDVGLNAPLYLLLIVTINHLADA*
back to top

mRNA from alignment at tig00000160_pilon:118423..118995+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9828.t1 ID=Ggra9828.t1|Name=Ggra9828.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=573bp|location=Sequence derived from alignment at tig00000160_pilon:118423..118995+ (Gracilaria gracilis GNS1m male)
ATGATGCTCGCCGATCATCTTCGACACGCTATTCCCGCCCTCCATACCCG
CTCCTCAAAGCTTGTGGACATGCCGCAGACCTTCAATCGCGTCATGCACT
TCAATCTGCTTCGAAATAAGCGCCACCATCTGAAACACATCTACCACATC
CAGCGCGCCGACACTGAACAACATCTGTATGCCATTCACAAAACTCCCAG
TGGCCTCAAACTTGTCAATGTCGCCACCAATGACACCCTCTTCCGCGCCA
TTATCAACAAGGAGTTCAAGACGGTCAGTATACTAGATGAGGTTAACGAC
AAAGTGCTGTTTACCACTCGACAACATGGCGCCTTGTTCGCTATCACCGA
TGTGTTTGAGGGTGAGGCCAAGGACGACGTCCCGTATGTGCAGGTTTGTG
CCGGTTCCGATTACAGCCTCACAGAAGTGGACGGCGGGCGCGTCCTGGCC
GTTGTGGAGAGGGAGATTCGCTGGGCCCAATTATGTCATCATTCGGTGTA
CGTAGATGTTGGACTGAATGCCCCGCTTTACCTTTTGTTAATTGTTACTA
TCAATCATCTCGCAGATGCTTGA
back to top

Coding sequence (CDS) from alignment at tig00000160_pilon:118423..118995+

>Ggra9828.t1 ID=Ggra9828.t1|Name=Ggra9828.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=573bp|location=Sequence derived from alignment at tig00000160_pilon:118423..118995+ (Gracilaria gracilis GNS1m male)
ATGATGCTCGCCGATCATCTTCGACACGCTATTCCCGCCCTCCATACCCG
CTCCTCAAAGCTTGTGGACATGCCGCAGACCTTCAATCGCGTCATGCACT
TCAATCTGCTTCGAAATAAGCGCCACCATCTGAAACACATCTACCACATC
CAGCGCGCCGACACTGAACAACATCTGTATGCCATTCACAAAACTCCCAG
TGGCCTCAAACTTGTCAATGTCGCCACCAATGACACCCTCTTCCGCGCCA
TTATCAACAAGGAGTTCAAGACGGTCAGTATACTAGATGAGGTTAACGAC
AAAGTGCTGTTTACCACTCGACAACATGGCGCCTTGTTCGCTATCACCGA
TGTGTTTGAGGGTGAGGCCAAGGACGACGTCCCGTATGTGCAGGTTTGTG
CCGGTTCCGATTACAGCCTCACAGAAGTGGACGGCGGGCGCGTCCTGGCC
GTTGTGGAGAGGGAGATTCGCTGGGCCCAATTATGTCATCATTCGGTGTA
CGTAGATGTTGGACTGAATGCCCCGCTTTACCTTTTGTTAATTGTTACTA
TCAATCATCTCGCAGATGCTTGA
back to top