Ggra9827.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9827.t1
Unique NameGgra9827.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length213
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000160_piloncontigtig00000160_pilon:112426..113064 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9827Ggra9827Gracilaria gracilis GNS1m malegenetig00000160_pilon 112426..113064 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9827.t1.start1Ggra9827.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000160_pilon 112426..112428 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9827.t1.CDS1Ggra9827.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000160_pilon 112426..113064 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9827.t1.exon1Ggra9827.t1.exon1Gracilaria gracilis GNS1m maleexontig00000160_pilon 112426..113064 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9827.t1.stop1Ggra9827.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000160_pilon 113062..113064 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9827.t1Ggra9827.t1Gracilaria gracilis GNS1m malepolypeptidetig00000160_pilon 112426..113064 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9827.t1 ID=Ggra9827.t1|Name=Ggra9827.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=213bp
MRQPLQPQTEPQQPLQNTMIKSFSSIIFLALAATASTCPTNLPYSSSIVG
RSYSMRQPCYPARFVAYGTASVSDTEIKYIPFYENFNHGGVNPGYVCPRT
YIFKINKWAPMLTELPRLVAPDDSGPLDQYCAREQNRQKVLSWPQGSTRG
RFISGMNQTIEGITYLRDHECWTPQYLPTLHTQEYLNAWLDGPITYLLSV
AFNFGLCLHTAN*
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spliced messenger RNA

>Ggra9827.t1 ID=Ggra9827.t1|Name=Ggra9827.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=639bp|location=Sequence derived from alignment at tig00000160_pilon:112426..113064+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGCAGCCACTCCAACCACAAACTGAACCACAACAGCCACTTCAAAA
CACAATGATCAAGTCATTCTCATCCATCATTTTCCTGGCCTTGGCGGCCA
CGGCCTCGACATGTCCGACCAATCTGCCATACTCAAGTTCTATAGTGGGT
CGGTCATATTCTATGCGACAGCCGTGTTACCCGGCCAGATTCGTCGCGTA
CGGCACCGCATCGGTCAGTGATACCGAAATCAAGTACATTCCATTCTACG
AGAATTTCAACCATGGAGGAGTGAATCCGGGATACGTCTGTCCGCGTACG
TACATTTTCAAGATTAACAAGTGGGCACCTATGTTAACGGAGCTCCCTCG
CCTTGTGGCACCAGATGATAGCGGCCCGCTGGATCAGTACTGTGCCCGCG
AGCAGAACAGACAGAAGGTTCTTTCTTGGCCTCAGGGATCGACTAGAGGG
CGGTTTATTTCTGGTATGAACCAAACCATTGAGGGAATAACCTATCTCCG
AGATCACGAATGTTGGACGCCTCAGTATCTTCCAACTTTGCACACACAAG
AATACTTGAATGCTTGGCTAGATGGCCCTATCACATATTTGCTGAGTGTG
GCGTTTAACTTTGGATTGTGTCTGCATACAGCTAACTGA
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protein sequence of Ggra9827.t1

>Ggra9827.t1 ID=Ggra9827.t1|Name=Ggra9827.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=213bp
MRQPLQPQTEPQQPLQNTMIKSFSSIIFLALAATASTCPTNLPYSSSIVG
RSYSMRQPCYPARFVAYGTASVSDTEIKYIPFYENFNHGGVNPGYVCPRT
YIFKINKWAPMLTELPRLVAPDDSGPLDQYCAREQNRQKVLSWPQGSTRG
RFISGMNQTIEGITYLRDHECWTPQYLPTLHTQEYLNAWLDGPITYLLSV
AFNFGLCLHTAN*
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mRNA from alignment at tig00000160_pilon:112426..113064+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9827.t1 ID=Ggra9827.t1|Name=Ggra9827.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=639bp|location=Sequence derived from alignment at tig00000160_pilon:112426..113064+ (Gracilaria gracilis GNS1m male)
ATGCGGCAGCCACTCCAACCACAAACTGAACCACAACAGCCACTTCAAAA
CACAATGATCAAGTCATTCTCATCCATCATTTTCCTGGCCTTGGCGGCCA
CGGCCTCGACATGTCCGACCAATCTGCCATACTCAAGTTCTATAGTGGGT
CGGTCATATTCTATGCGACAGCCGTGTTACCCGGCCAGATTCGTCGCGTA
CGGCACCGCATCGGTCAGTGATACCGAAATCAAGTACATTCCATTCTACG
AGAATTTCAACCATGGAGGAGTGAATCCGGGATACGTCTGTCCGCGTACG
TACATTTTCAAGATTAACAAGTGGGCACCTATGTTAACGGAGCTCCCTCG
CCTTGTGGCACCAGATGATAGCGGCCCGCTGGATCAGTACTGTGCCCGCG
AGCAGAACAGACAGAAGGTTCTTTCTTGGCCTCAGGGATCGACTAGAGGG
CGGTTTATTTCTGGTATGAACCAAACCATTGAGGGAATAACCTATCTCCG
AGATCACGAATGTTGGACGCCTCAGTATCTTCCAACTTTGCACACACAAG
AATACTTGAATGCTTGGCTAGATGGCCCTATCACATATTTGCTGAGTGTG
GCGTTTAACTTTGGATTGTGTCTGCATACAGCTAACTGA
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Coding sequence (CDS) from alignment at tig00000160_pilon:112426..113064+

>Ggra9827.t1 ID=Ggra9827.t1|Name=Ggra9827.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=639bp|location=Sequence derived from alignment at tig00000160_pilon:112426..113064+ (Gracilaria gracilis GNS1m male)
ATGCGGCAGCCACTCCAACCACAAACTGAACCACAACAGCCACTTCAAAA
CACAATGATCAAGTCATTCTCATCCATCATTTTCCTGGCCTTGGCGGCCA
CGGCCTCGACATGTCCGACCAATCTGCCATACTCAAGTTCTATAGTGGGT
CGGTCATATTCTATGCGACAGCCGTGTTACCCGGCCAGATTCGTCGCGTA
CGGCACCGCATCGGTCAGTGATACCGAAATCAAGTACATTCCATTCTACG
AGAATTTCAACCATGGAGGAGTGAATCCGGGATACGTCTGTCCGCGTACG
TACATTTTCAAGATTAACAAGTGGGCACCTATGTTAACGGAGCTCCCTCG
CCTTGTGGCACCAGATGATAGCGGCCCGCTGGATCAGTACTGTGCCCGCG
AGCAGAACAGACAGAAGGTTCTTTCTTGGCCTCAGGGATCGACTAGAGGG
CGGTTTATTTCTGGTATGAACCAAACCATTGAGGGAATAACCTATCTCCG
AGATCACGAATGTTGGACGCCTCAGTATCTTCCAACTTTGCACACACAAG
AATACTTGAATGCTTGGCTAGATGGCCCTATCACATATTTGCTGAGTGTG
GCGTTTAACTTTGGATTGTGTCTGCATACAGCTAACTGA
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