Ggra9826.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9826.t1
Unique NameGgra9826.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length190
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000160_piloncontigtig00000160_pilon:109269..109838 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9826Ggra9826Gracilaria gracilis GNS1m malegenetig00000160_pilon 109269..109838 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9826.t1.start1Ggra9826.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000160_pilon 109269..109271 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9826.t1.CDS1Ggra9826.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000160_pilon 109269..109838 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9826.t1.exon1Ggra9826.t1.exon1Gracilaria gracilis GNS1m maleexontig00000160_pilon 109269..109838 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9826.t1.stop1Ggra9826.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000160_pilon 109836..109838 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9826.t1Ggra9826.t1Gracilaria gracilis GNS1m malepolypeptidetig00000160_pilon 109269..109838 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9826.t1 ID=Ggra9826.t1|Name=Ggra9826.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=190bp
MVLAEQLRLALMSLNIRVPRKISLPLICNRVTRFDITPPKHPNSRLLCSV
YRAHTDELMFKILRTSNGYKIVNAQKKLLYYAIRNRQKEGLQIIEANSDH
VLFTALLRGQLFSIIDVFHGNDGYGPPFFQVCGASDYDLTENESGRVLAV
VRRTVRWHQVPTCSVVVDAGLNAAVFILLISIVNESSRA*
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spliced messenger RNA

>Ggra9826.t1 ID=Ggra9826.t1|Name=Ggra9826.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=570bp|location=Sequence derived from alignment at tig00000160_pilon:109269..109838+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCCTCGCTGAACAACTTCGCCTGGCGCTCATGTCCCTAAACATTCG
CGTGCCGAGGAAAATCTCACTTCCTCTCATCTGCAACCGCGTCACTCGCT
TCGACATAACACCCCCCAAGCATCCGAACTCAAGGCTTCTCTGCAGCGTG
TATCGAGCCCACACTGATGAGCTTATGTTTAAGATCCTGAGAACGAGCAA
CGGATACAAAATCGTCAACGCACAGAAGAAGCTATTGTACTATGCGATTC
GGAACCGGCAGAAAGAAGGGTTGCAAATCATAGAGGCCAATTCTGACCAC
GTTCTCTTCACCGCTCTACTGAGAGGTCAGTTATTCTCGATCATTGACGT
GTTTCACGGAAATGATGGCTATGGACCTCCTTTCTTCCAGGTCTGTGGTG
CTTCGGATTATGATTTGACTGAGAACGAGAGCGGAAGGGTTCTGGCTGTG
GTTCGACGCACAGTAAGATGGCATCAAGTTCCCACTTGCTCGGTTGTCGT
TGATGCCGGTTTGAACGCAGCTGTTTTCATCCTGCTCATTTCTATCGTTA
ACGAAAGCTCACGTGCTTGA
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protein sequence of Ggra9826.t1

>Ggra9826.t1 ID=Ggra9826.t1|Name=Ggra9826.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=190bp
MVLAEQLRLALMSLNIRVPRKISLPLICNRVTRFDITPPKHPNSRLLCSV
YRAHTDELMFKILRTSNGYKIVNAQKKLLYYAIRNRQKEGLQIIEANSDH
VLFTALLRGQLFSIIDVFHGNDGYGPPFFQVCGASDYDLTENESGRVLAV
VRRTVRWHQVPTCSVVVDAGLNAAVFILLISIVNESSRA*
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mRNA from alignment at tig00000160_pilon:109269..109838+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9826.t1 ID=Ggra9826.t1|Name=Ggra9826.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=570bp|location=Sequence derived from alignment at tig00000160_pilon:109269..109838+ (Gracilaria gracilis GNS1m male)
ATGGTCCTCGCTGAACAACTTCGCCTGGCGCTCATGTCCCTAAACATTCG
CGTGCCGAGGAAAATCTCACTTCCTCTCATCTGCAACCGCGTCACTCGCT
TCGACATAACACCCCCCAAGCATCCGAACTCAAGGCTTCTCTGCAGCGTG
TATCGAGCCCACACTGATGAGCTTATGTTTAAGATCCTGAGAACGAGCAA
CGGATACAAAATCGTCAACGCACAGAAGAAGCTATTGTACTATGCGATTC
GGAACCGGCAGAAAGAAGGGTTGCAAATCATAGAGGCCAATTCTGACCAC
GTTCTCTTCACCGCTCTACTGAGAGGTCAGTTATTCTCGATCATTGACGT
GTTTCACGGAAATGATGGCTATGGACCTCCTTTCTTCCAGGTCTGTGGTG
CTTCGGATTATGATTTGACTGAGAACGAGAGCGGAAGGGTTCTGGCTGTG
GTTCGACGCACAGTAAGATGGCATCAAGTTCCCACTTGCTCGGTTGTCGT
TGATGCCGGTTTGAACGCAGCTGTTTTCATCCTGCTCATTTCTATCGTTA
ACGAAAGCTCACGTGCTTGA
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Coding sequence (CDS) from alignment at tig00000160_pilon:109269..109838+

>Ggra9826.t1 ID=Ggra9826.t1|Name=Ggra9826.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=570bp|location=Sequence derived from alignment at tig00000160_pilon:109269..109838+ (Gracilaria gracilis GNS1m male)
ATGGTCCTCGCTGAACAACTTCGCCTGGCGCTCATGTCCCTAAACATTCG
CGTGCCGAGGAAAATCTCACTTCCTCTCATCTGCAACCGCGTCACTCGCT
TCGACATAACACCCCCCAAGCATCCGAACTCAAGGCTTCTCTGCAGCGTG
TATCGAGCCCACACTGATGAGCTTATGTTTAAGATCCTGAGAACGAGCAA
CGGATACAAAATCGTCAACGCACAGAAGAAGCTATTGTACTATGCGATTC
GGAACCGGCAGAAAGAAGGGTTGCAAATCATAGAGGCCAATTCTGACCAC
GTTCTCTTCACCGCTCTACTGAGAGGTCAGTTATTCTCGATCATTGACGT
GTTTCACGGAAATGATGGCTATGGACCTCCTTTCTTCCAGGTCTGTGGTG
CTTCGGATTATGATTTGACTGAGAACGAGAGCGGAAGGGTTCTGGCTGTG
GTTCGACGCACAGTAAGATGGCATCAAGTTCCCACTTGCTCGGTTGTCGT
TGATGCCGGTTTGAACGCAGCTGTTTTCATCCTGCTCATTTCTATCGTTA
ACGAAAGCTCACGTGCTTGA
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