Ggra9823.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9823.t1
Unique NameGgra9823.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length343
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000160_piloncontigtig00000160_pilon:51424..52613 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9823Ggra9823Gracilaria gracilis GNS1m malegenetig00000160_pilon 51424..52613 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9823.t1Ggra9823.t1Gracilaria gracilis GNS1m malepolypeptidetig00000160_pilon 51424..52613 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9823.t1.start1Ggra9823.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000160_pilon 51424..51426 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9823.t1.CDS1Ggra9823.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000160_pilon 51424..52078 +
Ggra9823.t1.CDS2Ggra9823.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000160_pilon 52240..52613 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9823.t1.exon1Ggra9823.t1.exon1Gracilaria gracilis GNS1m maleexontig00000160_pilon 51424..52078 +
Ggra9823.t1.exon2Ggra9823.t1.exon2Gracilaria gracilis GNS1m maleexontig00000160_pilon 52240..52613 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9823.t1.intron1Ggra9823.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000160_pilon 52079..52239 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9823.t1.stop1Ggra9823.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000160_pilon 52611..52613 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9823.t1 ID=Ggra9823.t1|Name=Ggra9823.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=343bp
MLDLNISADGDNVLARLRQRASDVVNDLPDDIQREMKSLQSRSARSNRVT
KALNKNLGTFWRSLCGLDTSVREEEEAGARSLANKTAEIIPWIYELEPKM
PVWICDLPLLFLITAIGFQWYILSFMYRKIAISLPEDRDKEINWMTKLKI
KDEKEFMKLFLSSYRDLIPRIHQAGFDKIMFAAAPSNPTMCESFSEASVE
ALTKCITLLQDLRCYIPFELHHIQSGSVTRSVKASTLDHAIASGSSGSPE
PRLFDEVCSFWEALLHINAPVFQRIVDKNNLEPVTRKGKDALAFMNSFFL
IKDELRDLYYVFILLDIILADNLKVFDGVVALVIHKKSKTKK*
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spliced messenger RNA

>Ggra9823.t1 ID=Ggra9823.t1|Name=Ggra9823.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1029bp|location=Sequence derived from alignment at tig00000160_pilon:51424..52613+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTGATCTGAATATCTCTGCGGACGGGGACAATGTTTTGGCACGCCT
GCGCCAGCGTGCTTCAGATGTAGTTAATGATCTACCAGACGACATTCAGA
GAGAGATGAAAAGTTTGCAGTCTCGATCAGCTCGATCCAATCGAGTCACA
AAGGCGCTCAACAAAAATTTGGGAACTTTTTGGAGAAGCCTATGTGGTCT
AGACACCTCAGTGCGTGAAGAGGAGGAGGCTGGTGCACGGAGTTTGGCAA
ACAAAACCGCTGAGATCATTCCATGGATATATGAATTAGAACCGAAGATG
CCTGTATGGATTTGTGACCTACCGTTACTGTTTCTAATCACCGCGATCGG
GTTTCAGTGGTACATACTGTCATTCATGTACCGAAAAATTGCTATTTCCC
TGCCCGAAGACAGGGACAAGGAAATAAATTGGATGACAAAACTGAAGATC
AAGGATGAGAAGGAGTTCATGAAATTGTTTCTTTCAAGTTACAGAGACCT
TATTCCCAGAATCCATCAGGCCGGGTTTGACAAAATCATGTTCGCCGCCG
CACCTAGCAATCCTACAATGTGTGAGTCCTTTTCAGAGGCGAGTGTGGAA
GCATTGACTAAGTGTATTACATTACTGCAAGACCTTCGCTGTTACATCCC
TTTTGAACTCCATCACATTCAGAGTGGTAGTGTAACAAGAAGTGTGAAAG
CCTCCACTCTTGATCATGCAATCGCCTCAGGCTCATCTGGGTCACCGGAG
CCAAGATTGTTCGATGAGGTGTGTAGTTTCTGGGAGGCACTACTGCACAT
TAATGCGCCTGTGTTTCAACGCATTGTTGATAAGAACAATCTGGAACCCG
TAACTAGGAAAGGAAAGGATGCTTTGGCCTTCATGAACTCATTTTTCCTT
ATCAAGGATGAGCTTCGTGACCTTTATTACGTTTTCATATTACTTGATAT
TATACTTGCAGATAATCTCAAAGTCTTTGATGGTGTTGTCGCATTGGTAA
TTCACAAAAAGTCTAAGACCAAGAAGTGA
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protein sequence of Ggra9823.t1

>Ggra9823.t1 ID=Ggra9823.t1|Name=Ggra9823.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=343bp
MLDLNISADGDNVLARLRQRASDVVNDLPDDIQREMKSLQSRSARSNRVT
KALNKNLGTFWRSLCGLDTSVREEEEAGARSLANKTAEIIPWIYELEPKM
PVWICDLPLLFLITAIGFQWYILSFMYRKIAISLPEDRDKEINWMTKLKI
KDEKEFMKLFLSSYRDLIPRIHQAGFDKIMFAAAPSNPTMCESFSEASVE
ALTKCITLLQDLRCYIPFELHHIQSGSVTRSVKASTLDHAIASGSSGSPE
PRLFDEVCSFWEALLHINAPVFQRIVDKNNLEPVTRKGKDALAFMNSFFL
IKDELRDLYYVFILLDIILADNLKVFDGVVALVIHKKSKTKK*
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mRNA from alignment at tig00000160_pilon:51424..52613+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9823.t1 ID=Ggra9823.t1|Name=Ggra9823.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1190bp|location=Sequence derived from alignment at tig00000160_pilon:51424..52613+ (Gracilaria gracilis GNS1m male)
ATGCTTGATCTGAATATCTCTGCGGACGGGGACAATGTTTTGGCACGCCT
GCGCCAGCGTGCTTCAGATGTAGTTAATGATCTACCAGACGACATTCAGA
GAGAGATGAAAAGTTTGCAGTCTCGATCAGCTCGATCCAATCGAGTCACA
AAGGCGCTCAACAAAAATTTGGGAACTTTTTGGAGAAGCCTATGTGGTCT
AGACACCTCAGTGCGTGAAGAGGAGGAGGCTGGTGCACGGAGTTTGGCAA
ACAAAACCGCTGAGATCATTCCATGGATATATGAATTAGAACCGAAGATG
CCTGTATGGATTTGTGACCTACCGTTACTGTTTCTAATCACCGCGATCGG
GTTTCAGTGGTACATACTGTCATTCATGTACCGAAAAATTGCTATTTCCC
TGCCCGAAGACAGGGACAAGGAAATAAATTGGATGACAAAACTGAAGATC
AAGGATGAGAAGGAGTTCATGAAATTGTTTCTTTCAAGTTACAGAGACCT
TATTCCCAGAATCCATCAGGCCGGGTTTGACAAAATCATGTTCGCCGCCG
CACCTAGCAATCCTACAATGTGTGAGTCCTTTTCAGAGGCGAGTGTGGAA
GCATTGACTAAGTGTATTACATTACTGCAAGACCTTCGCTGTTACATCCC
TTTTGGTATGGCGATGTCTAAAAACAGGTGAGACTCTGTGAGAAAGGCTT
GGGTTCGTATGGAGAACGTTGTTATTTCGAGGGTTAATGTCGTGAAGAAG
AAGCAAGGTGCCTCATCTAACATTCAACCGCATGAATCTTGTGGGTGCTG
TTACCGTTTTTGGTAGAACTCCATCACATTCAGAGTGGTAGTGTAACAAG
AAGTGTGAAAGCCTCCACTCTTGATCATGCAATCGCCTCAGGCTCATCTG
GGTCACCGGAGCCAAGATTGTTCGATGAGGTGTGTAGTTTCTGGGAGGCA
CTACTGCACATTAATGCGCCTGTGTTTCAACGCATTGTTGATAAGAACAA
TCTGGAACCCGTAACTAGGAAAGGAAAGGATGCTTTGGCCTTCATGAACT
CATTTTTCCTTATCAAGGATGAGCTTCGTGACCTTTATTACGTTTTCATA
TTACTTGATATTATACTTGCAGATAATCTCAAAGTCTTTGATGGTGTTGT
CGCATTGGTAATTCACAAAAAGTCTAAGACCAAGAAGTGA
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Coding sequence (CDS) from alignment at tig00000160_pilon:51424..52613+

>Ggra9823.t1 ID=Ggra9823.t1|Name=Ggra9823.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1029bp|location=Sequence derived from alignment at tig00000160_pilon:51424..52613+ (Gracilaria gracilis GNS1m male)
ATGCTTGATCTGAATATCTCTGCGGACGGGGACAATGTTTTGGCACGCCT
GCGCCAGCGTGCTTCAGATGTAGTTAATGATCTACCAGACGACATTCAGA
GAGAGATGAAAAGTTTGCAGTCTCGATCAGCTCGATCCAATCGAGTCACA
AAGGCGCTCAACAAAAATTTGGGAACTTTTTGGAGAAGCCTATGTGGTCT
AGACACCTCAGTGCGTGAAGAGGAGGAGGCTGGTGCACGGAGTTTGGCAA
ACAAAACCGCTGAGATCATTCCATGGATATATGAATTAGAACCGAAGATG
CCTGTATGGATTTGTGACCTACCGTTACTGTTTCTAATCACCGCGATCGG
GTTTCAGTGGTACATACTGTCATTCATGTACCGAAAAATTGCTATTTCCC
TGCCCGAAGACAGGGACAAGGAAATAAATTGGATGACAAAACTGAAGATC
AAGGATGAGAAGGAGTTCATGAAATTGTTTCTTTCAAGTTACAGAGACCT
TATTCCCAGAATCCATCAGGCCGGGTTTGACAAAATCATGTTCGCCGCCG
CACCTAGCAATCCTACAATGTGTGAGTCCTTTTCAGAGGCGAGTGTGGAA
GCATTGACTAAGTGTATTACATTACTGCAAGACCTTCGCTGTTACATCCC
TTTTGAACTCCATCACATTCAGAGTGGTAGTGTAACAAGAAGTGTGAAAG
CCTCCACTCTTGATCATGCAATCGCCTCAGGCTCATCTGGGTCACCGGAG
CCAAGATTGTTCGATGAGGTGTGTAGTTTCTGGGAGGCACTACTGCACAT
TAATGCGCCTGTGTTTCAACGCATTGTTGATAAGAACAATCTGGAACCCG
TAACTAGGAAAGGAAAGGATGCTTTGGCCTTCATGAACTCATTTTTCCTT
ATCAAGGATGAGCTTCGTGACCTTTATTACGTTTTCATATTACTTGATAT
TATACTTGCAGATAATCTCAAAGTCTTTGATGGTGTTGTCGCATTGGTAA
TTCACAAAAAGTCTAAGACCAAGAAGTGA
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