Ggra9822.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9822.t1
Unique Name	Ggra9822.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	471

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000160_pilon	contig	tig00000160_pilon:32056..33468 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9822	Ggra9822	Gracilaria gracilis GNS1m male	gene	tig00000160_pilon 32056..33468 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9822.t1.start1	Ggra9822.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000160_pilon 32056..32058 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9822.t1.CDS1	Ggra9822.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000160_pilon 32056..33468 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9822.t1.exon1	Ggra9822.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000160_pilon 32056..33468 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9822.t1.stop1	Ggra9822.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000160_pilon 33466..33468 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9822.t1	Ggra9822.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000160_pilon 32056..33468 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000160_pilon:32056..33468+
coding sequence from alignment at tig00000160_pilon:32056..33468+

mRNA sequence

>Ggra9822.t1 ID=Ggra9822.t1|Name=Ggra9822.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=471bp
MRGMLQTLSGLEYPAREVSTVPPTATTRGWAPWRWFGARHRAENVLTTKQ
PVDEHVSADGAHRGAAALANEADTERSLSDTDNDVESHLPPPTERLRRAG
IPDRDGVPRPRVKRYRLITPIAIRFTVLLLELGAIYSSSNIAANVLAGRS
FNVRLTERNQPFNATDARNSQCDEFIENARGVEQSGTVLLCIDSEENRDL
TNRHENTSVFFRFDPNENNMEYVVEDKFVMTTSVYARVLINLISDDDVQL
APLRPDLPVDNNYSKSVVQGVMNRAMQKLGFEVRIDQIRESVDEENVIKY
EYDRFFDSSTREEIRDSLLSELQQFTLDLNVTQPGEEDVLYTFKRDRGYF
RHENAVIAVVGKNRLAQGWLMIAWVGLLVVRLIAQRFFTVFDELAYPAVK
KVHGADLSVGPLAKVEKRETLYISKFSDGRVGHIGYRAANERQDRVPNFY
GCDIVLGSGKSLKRRVRAAR*

spliced messenger RNA

>Ggra9822.t1 ID=Ggra9822.t1|Name=Ggra9822.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1413bp|location=Sequence derived from alignment at tig00000160_pilon:32056..33468+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
atgagggggatgctgcagaccttgtccggactggagtatcctgcgcgcga
AGTATCCACCGTACCGCCAACCGCCACCACACGCGGCTGGGCGCCGTGGC
GCTGGTTTGGTGCGCGCCATCGTGCTGAAAATGTACTCACCACCAAGCAA
CCGGTCGACGAGCATGTCAGTGCTGATGGTGCCCATCGTGGCGCGGCGGC
CTTGGCCAACGAAGCCGACACGGAGCGCTCTTTGAGCGACACGGATAACG
ACGTGGAATCACACCTTCCGCCGCCGACCGAGAGGCTGCGCCGCGCTGGA
ATACCCGACCGTGACGGCGTGCCGCGTCCGCGAGTGAAGCGCTACCGACT
GATAACCCCCATTGCCATTCGTTTCACCGTGCTCCTGCTGGAGCTGGGCG
CTATCTACTCGAGCTCCAACATCGCGGCTAACGTGCTGGCGGGGCGGTCT
TTCAATGTGCGTCTCACAGAGCGCAACCAGCCGTTCAACGCAACTGACGC
GCGCAACTCTCAGTGTGACGAATTCATCGAGAATGCGCGCGGAGTGGAGC
AGAGTGGCACCGTGTTGCTGTGCATTGACAGCGAAGAGAACCGTGATTTA
ACTAATCGACACGAGAATACGTCTGTGTTTTTCAGGTTCGACCCCAATGA
GAATAACATGGAATACGTGGTGGAGGATAAGTTTGTGATGACCACCTCTG
TGTATGCGCGCGTGCTTATCAACTTGATCAGCGACGATGACGTACAACTG
GCGCCATTGCGACCGGACCTGCCGGTGGACAATAACTATTCCAAGAGCGT
GGTTCAGGGCGTGATGAATCGCGCCATGCAAAAATTGGGTTTCGAAGTGC
GCATTGACCAGATCAGGGAGAGCGTGGACGAAGAGAACGTGATCAAATAC
GAGTATGACCGCTTCTTCGACAGCTCGACGCGCGAAGAAATCCGTGACTC
ATTGCTTTCAGAGTTACAGCAGTTCACGCTGGACTTGAACGTGACGCAGC
CGGGTGAGGAGGACGTGTTGTACACTTTCAAAAGGGACCGAGGCTACTTT
CGGCACGAAAACGCCGTGATCGCGGTGGTGGGCAAAAACCGGCTGGCGCA
GGGCTGGCTGATGATTGCGTGGGTGGGGCTGCTAGTGGTGCGGCTGATCG
CGCAGCGCTTCTTCACGGTGTTCGATGAATTGGCATATCCTGCAGTGAAG
AAGGTGCACGGGGCGGACTTGTCGGTGGGACCGCTGGCGAAGGTGGAGAA
GAGGGAGACGCTGTACATTAGCAAGTTCTCCGACGGGCGTGTGGGTCACA
TTGGCTACCGGGCTGCTAACGAACGCCAGGACCGCGTGCCCAATTTCTAC
GGCTGCGACATTGTTTTGGGCTCCGGCAAATCGCTCAAGCGGCGGGTGCG
CGCAGCGCGATGA

protein sequence of Ggra9822.t1

>Ggra9822.t1 ID=Ggra9822.t1|Name=Ggra9822.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=471bp
MRGMLQTLSGLEYPAREVSTVPPTATTRGWAPWRWFGARHRAENVLTTKQ
PVDEHVSADGAHRGAAALANEADTERSLSDTDNDVESHLPPPTERLRRAG
IPDRDGVPRPRVKRYRLITPIAIRFTVLLLELGAIYSSSNIAANVLAGRS
FNVRLTERNQPFNATDARNSQCDEFIENARGVEQSGTVLLCIDSEENRDL
TNRHENTSVFFRFDPNENNMEYVVEDKFVMTTSVYARVLINLISDDDVQL
APLRPDLPVDNNYSKSVVQGVMNRAMQKLGFEVRIDQIRESVDEENVIKY
EYDRFFDSSTREEIRDSLLSELQQFTLDLNVTQPGEEDVLYTFKRDRGYF
RHENAVIAVVGKNRLAQGWLMIAWVGLLVVRLIAQRFFTVFDELAYPAVK
KVHGADLSVGPLAKVEKRETLYISKFSDGRVGHIGYRAANERQDRVPNFY
GCDIVLGSGKSLKRRVRAAR*

mRNA from alignment at tig00000160_pilon:32056..33468+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9822.t1 ID=Ggra9822.t1|Name=Ggra9822.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1413bp|location=Sequence derived from alignment at tig00000160_pilon:32056..33468+ (Gracilaria gracilis GNS1m male)
atgagggggatgctgcagaccttgtccggactggagtatcctgcgcgcga
AGTATCCACCGTACCGCCAACCGCCACCACACGCGGCTGGGCGCCGTGGC
GCTGGTTTGGTGCGCGCCATCGTGCTGAAAATGTACTCACCACCAAGCAA
CCGGTCGACGAGCATGTCAGTGCTGATGGTGCCCATCGTGGCGCGGCGGC
CTTGGCCAACGAAGCCGACACGGAGCGCTCTTTGAGCGACACGGATAACG
ACGTGGAATCACACCTTCCGCCGCCGACCGAGAGGCTGCGCCGCGCTGGA
ATACCCGACCGTGACGGCGTGCCGCGTCCGCGAGTGAAGCGCTACCGACT
GATAACCCCCATTGCCATTCGTTTCACCGTGCTCCTGCTGGAGCTGGGCG
CTATCTACTCGAGCTCCAACATCGCGGCTAACGTGCTGGCGGGGCGGTCT
TTCAATGTGCGTCTCACAGAGCGCAACCAGCCGTTCAACGCAACTGACGC
GCGCAACTCTCAGTGTGACGAATTCATCGAGAATGCGCGCGGAGTGGAGC
AGAGTGGCACCGTGTTGCTGTGCATTGACAGCGAAGAGAACCGTGATTTA
ACTAATCGACACGAGAATACGTCTGTGTTTTTCAGGTTCGACCCCAATGA
GAATAACATGGAATACGTGGTGGAGGATAAGTTTGTGATGACCACCTCTG
TGTATGCGCGCGTGCTTATCAACTTGATCAGCGACGATGACGTACAACTG
GCGCCATTGCGACCGGACCTGCCGGTGGACAATAACTATTCCAAGAGCGT
GGTTCAGGGCGTGATGAATCGCGCCATGCAAAAATTGGGTTTCGAAGTGC
GCATTGACCAGATCAGGGAGAGCGTGGACGAAGAGAACGTGATCAAATAC
GAGTATGACCGCTTCTTCGACAGCTCGACGCGCGAAGAAATCCGTGACTC
ATTGCTTTCAGAGTTACAGCAGTTCACGCTGGACTTGAACGTGACGCAGC
CGGGTGAGGAGGACGTGTTGTACACTTTCAAAAGGGACCGAGGCTACTTT
CGGCACGAAAACGCCGTGATCGCGGTGGTGGGCAAAAACCGGCTGGCGCA
GGGCTGGCTGATGATTGCGTGGGTGGGGCTGCTAGTGGTGCGGCTGATCG
CGCAGCGCTTCTTCACGGTGTTCGATGAATTGGCATATCCTGCAGTGAAG
AAGGTGCACGGGGCGGACTTGTCGGTGGGACCGCTGGCGAAGGTGGAGAA
GAGGGAGACGCTGTACATTAGCAAGTTCTCCGACGGGCGTGTGGGTCACA
TTGGCTACCGGGCTGCTAACGAACGCCAGGACCGCGTGCCCAATTTCTAC
GGCTGCGACATTGTTTTGGGCTCCGGCAAATCGCTCAAGCGGCGGGTGCG
CGCAGCGCGATGA

Coding sequence (CDS) from alignment at tig00000160_pilon:32056..33468+

>Ggra9822.t1 ID=Ggra9822.t1|Name=Ggra9822.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1413bp|location=Sequence derived from alignment at tig00000160_pilon:32056..33468+ (Gracilaria gracilis GNS1m male)
atgagggggatgctgcagaccttgtccggactggagtatcctgcgcgcga
AGTATCCACCGTACCGCCAACCGCCACCACACGCGGCTGGGCGCCGTGGC
GCTGGTTTGGTGCGCGCCATCGTGCTGAAAATGTACTCACCACCAAGCAA
CCGGTCGACGAGCATGTCAGTGCTGATGGTGCCCATCGTGGCGCGGCGGC
CTTGGCCAACGAAGCCGACACGGAGCGCTCTTTGAGCGACACGGATAACG
ACGTGGAATCACACCTTCCGCCGCCGACCGAGAGGCTGCGCCGCGCTGGA
ATACCCGACCGTGACGGCGTGCCGCGTCCGCGAGTGAAGCGCTACCGACT
GATAACCCCCATTGCCATTCGTTTCACCGTGCTCCTGCTGGAGCTGGGCG
CTATCTACTCGAGCTCCAACATCGCGGCTAACGTGCTGGCGGGGCGGTCT
TTCAATGTGCGTCTCACAGAGCGCAACCAGCCGTTCAACGCAACTGACGC
GCGCAACTCTCAGTGTGACGAATTCATCGAGAATGCGCGCGGAGTGGAGC
AGAGTGGCACCGTGTTGCTGTGCATTGACAGCGAAGAGAACCGTGATTTA
ACTAATCGACACGAGAATACGTCTGTGTTTTTCAGGTTCGACCCCAATGA
GAATAACATGGAATACGTGGTGGAGGATAAGTTTGTGATGACCACCTCTG
TGTATGCGCGCGTGCTTATCAACTTGATCAGCGACGATGACGTACAACTG
GCGCCATTGCGACCGGACCTGCCGGTGGACAATAACTATTCCAAGAGCGT
GGTTCAGGGCGTGATGAATCGCGCCATGCAAAAATTGGGTTTCGAAGTGC
GCATTGACCAGATCAGGGAGAGCGTGGACGAAGAGAACGTGATCAAATAC
GAGTATGACCGCTTCTTCGACAGCTCGACGCGCGAAGAAATCCGTGACTC
ATTGCTTTCAGAGTTACAGCAGTTCACGCTGGACTTGAACGTGACGCAGC
CGGGTGAGGAGGACGTGTTGTACACTTTCAAAAGGGACCGAGGCTACTTT
CGGCACGAAAACGCCGTGATCGCGGTGGTGGGCAAAAACCGGCTGGCGCA
GGGCTGGCTGATGATTGCGTGGGTGGGGCTGCTAGTGGTGCGGCTGATCG
CGCAGCGCTTCTTCACGGTGTTCGATGAATTGGCATATCCTGCAGTGAAG
AAGGTGCACGGGGCGGACTTGTCGGTGGGACCGCTGGCGAAGGTGGAGAA
GAGGGAGACGCTGTACATTAGCAAGTTCTCCGACGGGCGTGTGGGTCACA
TTGGCTACCGGGCTGCTAACGAACGCCAGGACCGCGTGCCCAATTTCTAC
GGCTGCGACATTGTTTTGGGCTCCGGCAAATCGCTCAAGCGGCGGGTGCG
CGCAGCGCGATGA