Ggra9820.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9820.t1
Unique NameGgra9820.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length451
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000160_piloncontigtig00000160_pilon:28672..30024 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog329726.AM1_0817
PFAMsLipoxygenase
Max annot lvl1117|Cyanobacteria
KEGG rclassRC00561
KEGG koko:K19246
KEGG ReactionR01593
KEGG Pathwayko00590,ko01100,map00590,map01100
Evalue1.74e-98
EggNOG OGsCOG0753@1|root,COG0753@2|Bacteria,1GQ8A@1117|Cyanobacteria
EC1.13.11.33
DescriptionLipoxygenase
COG categoryP
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9820Ggra9820Gracilaria gracilis GNS1m malegenetig00000160_pilon 28672..30024 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9820.t1.stop1Ggra9820.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000160_pilon 28672..28674 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9820.t1.CDS1Ggra9820.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000160_pilon 28672..30024 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9820.t1.exon1Ggra9820.t1.exon1Gracilaria gracilis GNS1m maleexontig00000160_pilon 28672..30024 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9820.t1.start1Ggra9820.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000160_pilon 30022..30024 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9820.t1Ggra9820.t1Gracilaria gracilis GNS1m malepolypeptidetig00000160_pilon 28672..30024 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9820.t1 ID=Ggra9820.t1|Name=Ggra9820.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=451bp
MRLMKLEKPVKDLFPEMTNDILHGIRAFGGDSIAEMEKEGRLYYVDYPEF
AGVKAGVLPDGTKKEGYYIYSPTALLAVPKNLTDRTTVLPIAIRCDQDRS
YPMYTPNLSHTDEITWIAAKQTIQVADGVSHQAVYHLGRTHLLVEVFNGA
ANRTLASNHPIMKLLENHFYGTCLINTAAVDLLINPGGTIDKITAPQIEI
TKQVAASSVNSPSFSFNNWMPDKELASRGFHDSDSIRYPYRDYALRLWGV
INDWVDSYLSAYYKDDKDVLNDTELKAWCEEIIGADKGNLHGFGDNDSGM
IKTKAYLTRVVSMIIFTASVQHAAVNFTQSSLMQFTPAMPLAGFHPPPKT
AKPFANLEEWVTNMLPDLDKAKLQMDTAELIGVFQYTTLGEYGRSLNFLT
DEVESALKNFQEQLSIVGADIQKGNVVERIAGLPPYTQLVPKNIPQSINV
*
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spliced messenger RNA

>Ggra9820.t1 ID=Ggra9820.t1|Name=Ggra9820.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1353bp|location=Sequence derived from alignment at tig00000160_pilon:28672..30024- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGACTTATGAAGCTGGAAAAGCCTGTGAAGGACTTGTTCCCCGAGAT
GACGAATGATATTCTTCATGGCATTCGCGCCTTTGGTGGGGACTCAATAG
CTGAAATGGAGAAGGAAGGACGTCTTTACTACGTTGATTACCCTGAGTTT
GCTGGTGTTAAGGCGGGAGTGTTGCCGGATGGTACTAAGAAGGAAGGTTA
CTACATTTATTCCCCCACTGCATTGTTAGCTGTTCCGAAGAATCTCACCG
ATCGGACCACTGTATTGCCCATAGCCATCCGTTGTGACCAAGACAGGAGC
TATCCGATGTACACTCCAAATCTGAGTCATACGGATGAGATCACATGGAT
CGCAGCGAAGCAGACCATTCAGGTTGCCGATGGTGTCAGTCATCAGGCTG
TTTATCATCTTGGACGTACTCATTTGCTGGTTGAGGTATTCAATGGTGCC
GCCAATCGCACACTGGCATCGAACCACCCTATCATGAAGTTATTGGAGAA
CCACTTTTATGGTACCTGCCTCATCAACACGGCAGCAGTGGATCTGCTGA
TCAACCCCGGTGGAACTATTGACAAGATTACTGCCCCGCAGATCGAGATT
ACTAAGCAAGTTGCGGCTAGCTCTGTCAATTCACCATCCTTTTCCTTCAA
TAACTGGATGCCAGACAAAGAACTTGCATCCCGCGGCTTTCATGACTCTG
ACAGTATTCGATATCCGTATCGCGATTACGCTCTGCGTCTTTGGGGTGTA
ATCAACGACTGGGTAGATTCTTATCTCAGCGCCTACTACAAAGATGACAA
GGACGTGCTGAACGATACGGAGCTGAAAGCCTGGTGCGAGGAAATCATTG
GCGCTGACAAGGGCAATCTGCATGGGTTTGGCGACAACGACAGTGGAATG
ATCAAGACCAAGGCGTACCTGACTCGAGTTGTGTCCATGATCATTTTCAC
AGCATCAGTTCAACACGCTGCTGTGAACTTCACTCAATCTTCACTAATGC
AATTCACGCCTGCGATGCCTTTGGCGGGATTCCATCCTCCTCCGAAAACC
GCGAAGCCTTTTGCCAATCTTGAAGAATGGGTAACCAACATGTTGCCCGA
TCTGGACAAGGCAAAATTGCAGATGGACACAGCAGAGTTGATTGGCGTTT
TCCAGTATACTACTTTGGGAGAATACGGTAGGAGCTTGAACTTCCTCACT
GATGAAGTTGAATCAGCGCTGAAGAATTTCCAAGAGCAGCTCAGCATTGT
AGGAGCTGATATTCAGAAGGGCAATGTGGTTGAGAGGATTGCAGGTCTTC
CTCCATACACGCAACTAGTACCCAAGAACATTCCGCAGTCTATCAATGTA
TAG
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protein sequence of Ggra9820.t1

>Ggra9820.t1 ID=Ggra9820.t1|Name=Ggra9820.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=451bp
MRLMKLEKPVKDLFPEMTNDILHGIRAFGGDSIAEMEKEGRLYYVDYPEF
AGVKAGVLPDGTKKEGYYIYSPTALLAVPKNLTDRTTVLPIAIRCDQDRS
YPMYTPNLSHTDEITWIAAKQTIQVADGVSHQAVYHLGRTHLLVEVFNGA
ANRTLASNHPIMKLLENHFYGTCLINTAAVDLLINPGGTIDKITAPQIEI
TKQVAASSVNSPSFSFNNWMPDKELASRGFHDSDSIRYPYRDYALRLWGV
INDWVDSYLSAYYKDDKDVLNDTELKAWCEEIIGADKGNLHGFGDNDSGM
IKTKAYLTRVVSMIIFTASVQHAAVNFTQSSLMQFTPAMPLAGFHPPPKT
AKPFANLEEWVTNMLPDLDKAKLQMDTAELIGVFQYTTLGEYGRSLNFLT
DEVESALKNFQEQLSIVGADIQKGNVVERIAGLPPYTQLVPKNIPQSINV
*
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mRNA from alignment at tig00000160_pilon:28672..30024-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9820.t1 ID=Ggra9820.t1|Name=Ggra9820.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1353bp|location=Sequence derived from alignment at tig00000160_pilon:28672..30024- (Gracilaria gracilis GNS1m male)
ATGAGACTTATGAAGCTGGAAAAGCCTGTGAAGGACTTGTTCCCCGAGAT
GACGAATGATATTCTTCATGGCATTCGCGCCTTTGGTGGGGACTCAATAG
CTGAAATGGAGAAGGAAGGACGTCTTTACTACGTTGATTACCCTGAGTTT
GCTGGTGTTAAGGCGGGAGTGTTGCCGGATGGTACTAAGAAGGAAGGTTA
CTACATTTATTCCCCCACTGCATTGTTAGCTGTTCCGAAGAATCTCACCG
ATCGGACCACTGTATTGCCCATAGCCATCCGTTGTGACCAAGACAGGAGC
TATCCGATGTACACTCCAAATCTGAGTCATACGGATGAGATCACATGGAT
CGCAGCGAAGCAGACCATTCAGGTTGCCGATGGTGTCAGTCATCAGGCTG
TTTATCATCTTGGACGTACTCATTTGCTGGTTGAGGTATTCAATGGTGCC
GCCAATCGCACACTGGCATCGAACCACCCTATCATGAAGTTATTGGAGAA
CCACTTTTATGGTACCTGCCTCATCAACACGGCAGCAGTGGATCTGCTGA
TCAACCCCGGTGGAACTATTGACAAGATTACTGCCCCGCAGATCGAGATT
ACTAAGCAAGTTGCGGCTAGCTCTGTCAATTCACCATCCTTTTCCTTCAA
TAACTGGATGCCAGACAAAGAACTTGCATCCCGCGGCTTTCATGACTCTG
ACAGTATTCGATATCCGTATCGCGATTACGCTCTGCGTCTTTGGGGTGTA
ATCAACGACTGGGTAGATTCTTATCTCAGCGCCTACTACAAAGATGACAA
GGACGTGCTGAACGATACGGAGCTGAAAGCCTGGTGCGAGGAAATCATTG
GCGCTGACAAGGGCAATCTGCATGGGTTTGGCGACAACGACAGTGGAATG
ATCAAGACCAAGGCGTACCTGACTCGAGTTGTGTCCATGATCATTTTCAC
AGCATCAGTTCAACACGCTGCTGTGAACTTCACTCAATCTTCACTAATGC
AATTCACGCCTGCGATGCCTTTGGCGGGATTCCATCCTCCTCCGAAAACC
GCGAAGCCTTTTGCCAATCTTGAAGAATGGGTAACCAACATGTTGCCCGA
TCTGGACAAGGCAAAATTGCAGATGGACACAGCAGAGTTGATTGGCGTTT
TCCAGTATACTACTTTGGGAGAATACGGTAGGAGCTTGAACTTCCTCACT
GATGAAGTTGAATCAGCGCTGAAGAATTTCCAAGAGCAGCTCAGCATTGT
AGGAGCTGATATTCAGAAGGGCAATGTGGTTGAGAGGATTGCAGGTCTTC
CTCCATACACGCAACTAGTACCCAAGAACATTCCGCAGTCTATCAATGTA
TAG
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Coding sequence (CDS) from alignment at tig00000160_pilon:28672..30024-

>Ggra9820.t1 ID=Ggra9820.t1|Name=Ggra9820.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1353bp|location=Sequence derived from alignment at tig00000160_pilon:28672..30024- (Gracilaria gracilis GNS1m male)
ATGAGACTTATGAAGCTGGAAAAGCCTGTGAAGGACTTGTTCCCCGAGAT
GACGAATGATATTCTTCATGGCATTCGCGCCTTTGGTGGGGACTCAATAG
CTGAAATGGAGAAGGAAGGACGTCTTTACTACGTTGATTACCCTGAGTTT
GCTGGTGTTAAGGCGGGAGTGTTGCCGGATGGTACTAAGAAGGAAGGTTA
CTACATTTATTCCCCCACTGCATTGTTAGCTGTTCCGAAGAATCTCACCG
ATCGGACCACTGTATTGCCCATAGCCATCCGTTGTGACCAAGACAGGAGC
TATCCGATGTACACTCCAAATCTGAGTCATACGGATGAGATCACATGGAT
CGCAGCGAAGCAGACCATTCAGGTTGCCGATGGTGTCAGTCATCAGGCTG
TTTATCATCTTGGACGTACTCATTTGCTGGTTGAGGTATTCAATGGTGCC
GCCAATCGCACACTGGCATCGAACCACCCTATCATGAAGTTATTGGAGAA
CCACTTTTATGGTACCTGCCTCATCAACACGGCAGCAGTGGATCTGCTGA
TCAACCCCGGTGGAACTATTGACAAGATTACTGCCCCGCAGATCGAGATT
ACTAAGCAAGTTGCGGCTAGCTCTGTCAATTCACCATCCTTTTCCTTCAA
TAACTGGATGCCAGACAAAGAACTTGCATCCCGCGGCTTTCATGACTCTG
ACAGTATTCGATATCCGTATCGCGATTACGCTCTGCGTCTTTGGGGTGTA
ATCAACGACTGGGTAGATTCTTATCTCAGCGCCTACTACAAAGATGACAA
GGACGTGCTGAACGATACGGAGCTGAAAGCCTGGTGCGAGGAAATCATTG
GCGCTGACAAGGGCAATCTGCATGGGTTTGGCGACAACGACAGTGGAATG
ATCAAGACCAAGGCGTACCTGACTCGAGTTGTGTCCATGATCATTTTCAC
AGCATCAGTTCAACACGCTGCTGTGAACTTCACTCAATCTTCACTAATGC
AATTCACGCCTGCGATGCCTTTGGCGGGATTCCATCCTCCTCCGAAAACC
GCGAAGCCTTTTGCCAATCTTGAAGAATGGGTAACCAACATGTTGCCCGA
TCTGGACAAGGCAAAATTGCAGATGGACACAGCAGAGTTGATTGGCGTTT
TCCAGTATACTACTTTGGGAGAATACGGTAGGAGCTTGAACTTCCTCACT
GATGAAGTTGAATCAGCGCTGAAGAATTTCCAAGAGCAGCTCAGCATTGT
AGGAGCTGATATTCAGAAGGGCAATGTGGTTGAGAGGATTGCAGGTCTTC
CTCCATACACGCAACTAGTACCCAAGAACATTCCGCAGTCTATCAATGTA
TAG
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