Ggra9815.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9815.t1
Unique NameGgra9815.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length333
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000160_piloncontigtig00000160_pilon:10322..11800 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9815Ggra9815Gracilaria gracilis GNS1m malegenetig00000160_pilon 10322..11800 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9815.t1Ggra9815.t1Gracilaria gracilis GNS1m malepolypeptidetig00000160_pilon 10322..11800 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9815.t1.start1Ggra9815.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000160_pilon 10322..10324 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9815.t1.CDS1Ggra9815.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000160_pilon 10322..11170 +
Ggra9815.t1.CDS2Ggra9815.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000160_pilon 11651..11800 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9815.t1.exon1Ggra9815.t1.exon1Gracilaria gracilis GNS1m maleexontig00000160_pilon 10322..11170 +
Ggra9815.t1.exon2Ggra9815.t1.exon2Gracilaria gracilis GNS1m maleexontig00000160_pilon 11651..11800 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9815.t1.intron1Ggra9815.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000160_pilon 11171..11650 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9815.t1.stop1Ggra9815.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000160_pilon 11798..11800 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9815.t1 ID=Ggra9815.t1|Name=Ggra9815.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=333bp
MVNLREIERGIGIDLLRRPVLTATVNAWLLRLFADAFLQPDEDDDADEDG
DDLKKNTDVGCAKSPLSEKLAATAIFIAAYLVRLLGFAESVAWVVIAVVY
KAVRLPRVYGFEKLVLDVSALLFRPTMYYVKKTVRFQCRAGQKVPQLTLK
RLGFGRMVVTVVSAAESLTRDTRALLQLVRYMNDGTVALWTSDSMVMVGV
NKRVEAALCRLGTEPIALDLGWHKDVIERTNFKLEAVFTRESVRATESGI
QTVGKRVVVVQLAAALSTNNLELMVKSMGQFAAPADDDSAAKRGLVHVSE
VQRLKSVAALRLREHAPLVRRLGAERGTASGV*
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spliced messenger RNA

>Ggra9815.t1 ID=Ggra9815.t1|Name=Ggra9815.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=999bp|location=Sequence derived from alignment at tig00000160_pilon:10322..11800+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCAACTTGCGAGAGATCGAGCGCGGCATCGGCATCGACCTGCTGCG
CCGCCCCGTGCTGACCGCCACCGTCAACGCGTGGCTGCTGCGGCTGTTcg
ccgacgccttcctgcagcctgacgaggacgacgacgccgatgaggacggc
gacgacTTGAAGAAGAACACGGATGTCGGCTGCGCTAAGAGCCCGCTGTC
TGAGAAGCTGGCCGCGACGGCCATCTTCATCGCCGCGTACTTGGTGCGGC
TGCTGGGCTTTGCCGAGAGCGTGGCGTGGGTGGTGATCGCCGTGGTGTAC
AAGGCGGTGCGTCTGCCTCGCGTGTACGGCTTCGAGAAGCTGGTGCTGGA
CGTGAGCGCGCTGCTGTTCCGTCCCACCATGTACTACGTGAAGAAGACGG
TGCGCTTCCAGTGCCGCGCGGGGCAAAAGGTGCCGCAGCTCACGCTCAAG
CGCTTGGGCTTCGGCAGAATGGTAGTGACAGTGGTGAGTGCGGCCGAGTC
GCTGACTCGCGACACGCGCGCGCTGCTGCAGCTGGTGCGCTACATGAACG
ACGGCACGGTGGCGCTGTGGACGTCAGACTCGATGGTGATGGTGGGCGTG
AACAAGCGCGTGGAGGCGGCGCTGTGCCGGCTGGGCACCGAACCGATTGC
GCTGGACCTGGGCTGGCACAAGGACGTGATCGAGCGCACCAACTTCAAGC
TGGAGGCGGTGTTTACGCGCGAGAGCGTGCGCGCGACGGAGAGCGGCATC
CAGACGGTGGGCAAGCGCGTGGTGGTGGTGCAGCTGGCCGCGGCGCTGAG
CACGAACAACCTGGAGCTAATGGTGAAGagcatggggcagttcgcggcgc
ccgccgacgacgacagcgccgccaAGCGCGGGCTGGTGCACGTGTCCGAA
GTGCAGCGGCTCAAGAGCGTGGCGGCGCTGCGGCTGCGCGAGCACGCGCC
GCTTGTGCGGCGGCTGGGCGCGGAGCGCGGCACTGCGTCCGGCGTGTAG
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protein sequence of Ggra9815.t1

>Ggra9815.t1 ID=Ggra9815.t1|Name=Ggra9815.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=333bp
MVNLREIERGIGIDLLRRPVLTATVNAWLLRLFADAFLQPDEDDDADEDG
DDLKKNTDVGCAKSPLSEKLAATAIFIAAYLVRLLGFAESVAWVVIAVVY
KAVRLPRVYGFEKLVLDVSALLFRPTMYYVKKTVRFQCRAGQKVPQLTLK
RLGFGRMVVTVVSAAESLTRDTRALLQLVRYMNDGTVALWTSDSMVMVGV
NKRVEAALCRLGTEPIALDLGWHKDVIERTNFKLEAVFTRESVRATESGI
QTVGKRVVVVQLAAALSTNNLELMVKSMGQFAAPADDDSAAKRGLVHVSE
VQRLKSVAALRLREHAPLVRRLGAERGTASGV*
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mRNA from alignment at tig00000160_pilon:10322..11800+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9815.t1 ID=Ggra9815.t1|Name=Ggra9815.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1479bp|location=Sequence derived from alignment at tig00000160_pilon:10322..11800+ (Gracilaria gracilis GNS1m male)
ATGGTCAACTTGCGAGAGATCGAGCGCGGCATCGGCATCGACCTGCTGCG
CCGCCCCGTGCTGACCGCCACCGTCAACGCGTGGCTGCTGCGGCTGTTcg
ccgacgccttcctgcagcctgacgaggacgacgacgccgatgaggacggc
gacgacTTGAAGAAGAACACGGATGTCGGCTGCGCTAAGAGCCCGCTGTC
TGAGAAGCTGGCCGCGACGGCCATCTTCATCGCCGCGTACTTGGTGCGGC
TGCTGGGCTTTGCCGAGAGCGTGGCGTGGGTGGTGATCGCCGTGGTGTAC
AAGGCGGTGCGTCTGCCTCGCGTGTACGGCTTCGAGAAGCTGGTGCTGGA
CGTGAGCGCGCTGCTGTTCCGTCCCACCATGTACTACGTGAAGAAGACGG
TGCGCTTCCAGTGCCGCGCGGGGCAAAAGGTGCCGCAGCTCACGCTCAAG
CGCTTGGGCTTCGGCAGAATGGTAGTGACAGTGGTGAGTGCGGCCGAGTC
GCTGACTCGCGACACGCGCGCGCTGCTGCAGCTGGTGCGCTACATGAACG
ACGGCACGGTGGCGCTGTGGACGTCAGACTCGATGGTGATGGTGGGCGTG
AACAAGCGCGTGGAGGCGGCGCTGTGCCGGCTGGGCACCGAACCGATTGC
GCTGGACCTGGGCTGGCACAAGGACGTGATCGAGCGCACCAACTTCAAGC
TGGAGGCGGTGTTTACGCGCGAGAGCGTGCGCGCGACGGAGAGCGGCATC
CAGACGGTGGGCAAGCGCGTGGTGGTGGTGCAGCTGGCCGCGGCGCTGAG
CACGAACAACCTGGAGCTAATGGTGAAGagcatggggcagttcgcggcgg
tgtgcgaggcgtacgagcgcgggctgcggttgttcaacggcaagcgcgtg
tcgatctacgtggtggggctgggcatctcggtggcgctgattgtgttcta
cgagggcgcgggcgggctgctcaagccgtcggcagacgtgctgacgctgg
cggtgggcgcgttcacgctgtggatgacggtgggtaagagcgcggcgctg
ggcgagacggaggaggagacggtgttcacggcacactcgcgcgacaacgt
gctgctggcgtaccacgggctggcgcgcatcgagccgcaggtggtgaacg
tgtgctgggtgccggaggtgcatcgcgaggagcaggcggcgccgcccgcc
gacgcggagctggtggacggctccatcagcatgctggaggcggcggtgtg
tctgagcattttcgagcactacgggcacctgctcaagtggaagggaccgc
ggctggcgctggaccagctgctggtgcagcccgccgacgacgacagcgcc
gccaAGCGCGGGCTGGTGCACGTGTCCGAAGTGCAGCGGCTCAAGAGCGT
GGCGGCGCTGCGGCTGCGCGAGCACGCGCCGCTTGTGCGGCGGCTGGGCG
CGGAGCGCGGCACTGCGTCCGGCGTGTAG
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Coding sequence (CDS) from alignment at tig00000160_pilon:10322..11800+

>Ggra9815.t1 ID=Ggra9815.t1|Name=Ggra9815.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=999bp|location=Sequence derived from alignment at tig00000160_pilon:10322..11800+ (Gracilaria gracilis GNS1m male)
ATGGTCAACTTGCGAGAGATCGAGCGCGGCATCGGCATCGACCTGCTGCG
CCGCCCCGTGCTGACCGCCACCGTCAACGCGTGGCTGCTGCGGCTGTTcg
ccgacgccttcctgcagcctgacgaggacgacgacgccgatgaggacggc
gacgacTTGAAGAAGAACACGGATGTCGGCTGCGCTAAGAGCCCGCTGTC
TGAGAAGCTGGCCGCGACGGCCATCTTCATCGCCGCGTACTTGGTGCGGC
TGCTGGGCTTTGCCGAGAGCGTGGCGTGGGTGGTGATCGCCGTGGTGTAC
AAGGCGGTGCGTCTGCCTCGCGTGTACGGCTTCGAGAAGCTGGTGCTGGA
CGTGAGCGCGCTGCTGTTCCGTCCCACCATGTACTACGTGAAGAAGACGG
TGCGCTTCCAGTGCCGCGCGGGGCAAAAGGTGCCGCAGCTCACGCTCAAG
CGCTTGGGCTTCGGCAGAATGGTAGTGACAGTGGTGAGTGCGGCCGAGTC
GCTGACTCGCGACACGCGCGCGCTGCTGCAGCTGGTGCGCTACATGAACG
ACGGCACGGTGGCGCTGTGGACGTCAGACTCGATGGTGATGGTGGGCGTG
AACAAGCGCGTGGAGGCGGCGCTGTGCCGGCTGGGCACCGAACCGATTGC
GCTGGACCTGGGCTGGCACAAGGACGTGATCGAGCGCACCAACTTCAAGC
TGGAGGCGGTGTTTACGCGCGAGAGCGTGCGCGCGACGGAGAGCGGCATC
CAGACGGTGGGCAAGCGCGTGGTGGTGGTGCAGCTGGCCGCGGCGCTGAG
CACGAACAACCTGGAGCTAATGGTGAAGagcatggggcagttcgcggcgc
ccgccgacgacgacagcgccgccaAGCGCGGGCTGGTGCACGTGTCCGAA
GTGCAGCGGCTCAAGAGCGTGGCGGCGCTGCGGCTGCGCGAGCACGCGCC
GCTTGTGCGGCGGCTGGGCGCGGAGCGCGGCACTGCGTCCGGCGTGTAG
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